Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0445900 |
| Transcript ID | LotjaGi1g1v0445900.2 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Proteasome subunit alpha type; TAIR: AT3G22110.1 20S proteasome alpha subunit C1; Swiss-Prot: sp|O81148|PSA4A_ARATH Proteasome subunit alpha type-4-A; TrEMBL-Plants: tr|I3S0L1|I3S0L1_MEDTR Proteasome subunit alpha type; Found in the gene: LotjaGi1g1v0445900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:94482484..94486908) extracted from Lotus japonicus Gifu genome v1.2.
GGGGAGGTGAGAGGAGAAAGGGTTTAGGTGGAAATAAAAAAAATAAATATATATAAAGTCGACCTAGATCTAAGGAGAAG AAATCCATATCTGATTAGAGGAAAACCAAATCTAGGCTTACTTCTACCAAATCCATCTGCACTAAAGTATCAACAACCAA AGTTCAATCACAATGAAACAAACAGTTAAAACCACCCCAACACCTTGTTCTCTCCCTTACCAGCCACCATCAAGCCACTC CACTATCCTAACCCTAAACTAAGTTTTGGCTCTTGGATTTTAGTACGAAGCTTTGGCCATCGAGAAGCCTTTGAGTTTGA GTCTCGATCAAGGTTCAAATCGATCTTTGAGCTCGGATCCATAGGCTATTCGCGAGATAAAGGACTGTGTTCAAAGTTTA TCCCTCTTCTCCCGATCTCTTCATCTTTCTCCCTCTCTCTCGATCTCTTCTTTATCATTCTCTCACTCTCTCTCTGTTGA TCTCTTCTTCTATATTCCTCCCACTCTTCCCTCTGTTTCAACCTTTGGCATAGAGATGAAGATTCACGGCGAAGATTAGC AGCGAAGGAGCTAAAGATCAATGACGGTACAAATGAAGAGGTGAGGTAATGATGATCGATGAAGACCATGAAGTGAAGAT GAAACGGTGAAGACGTGAAAGAAGTTTAGAATTAGGGTGTTTGTATAAAAATTACTTAACTCATTTTTTATTATTTAATC ATTTATTTTATTTTATTTAATTTATTTAGTAAAATAGTGTTCCATTAGCAAAATTAACTATTCCACATTATTAATGAAGT CCACACGTGAGTAATTTCTAACTTTTTGTTGCAATTAGATGGCAAATCACGACAGGAATAAATGGAAAATTCGTATAAAA TCTCTCGTTTTATAAAGGGGGCCTAAATCACACAAGAGTCTAATCTTACAATGTGTTTGTTAAGCAAGAGATGCCGAAGA GAGAAGTCCTTTGGAGAGAGATACATGAGAGATGTGTAATCTCCACTTGTTTGGTATGAAATGCTGTAGTAGAGAGAGAG TTTAAAAAGGTACTCAATGACACTTTTTTCAATCTCTCCAAATTGGGGAGAATTTGTAGAGTAGAGACTCGTGGCTATCA TATTCACTTTTTGTCCTTTTTATTTTGTGTCTATAACAATAGTTTATTGCATGTATTAATTGGGTTAAAATTGTATTTTG ACACAAAATATAACTTTCCACATCATTCATTCACTTATCTTTCTCTTTTATCTCTATCATACAAAATAACCTACTAAATC TACTATATTTCTCACTTATTAGTTTATCTACCAAACAGAGCATTAGGGACAGTGGAAGGTAACTTGTCCCCAACGAAAAG AGCATTTAACAATCCCTTCTTGTTCAGTGACAGTAGCAGTACTCTTAACCTTCTCTCTCTGCCGCTCGTTCGGTTCTCCA ATCGCCGTTACGTTCTTCGTGTTCCCCAATTCTGGTATACTATTTAAATTTGTTCCGCTTCAATTTTTCTTTTTCTGATT GGGTTACTGTTATAGTGTTATGGTGATTTCTGTGTGTTGAATTAAATACCCTGATTCTGCATTTGCAATTATAATCGTCA ATTTCTTGGAAGATTTTCAGTACTTGATTTATGCAACATGACAGGTTGATTATCAATTAGTGACTCCGAAACTAGTTCCA GATTAGAATTCATAAACCCTATCCTGATTCTGAACGATCTACATTGGGCTATATTTGCCATTCTCAAGGACTAGTGTGTT GGTAGACTTCTAATTCTACTTCCACCAGTAAGCAATTTAACAGTTCTAGGCTTCTAGCTAAAGAAATAACAACACAAGCA AAAATGCCCTGATTTTCTGCATGCCATTTTCATTATTTGGGGTTTCTTTTTATCTGGTTGGTTAGTTTCCTCCAAACAAG GTTAACCGTATAAGTGTCCGTCATCTAAAGAGCTCCCTAACCAAAGAGTGTTCTAGAATCAGGAAAATAACAACAAATAG AACTACACATAATTGATAAATGATAAGCCACTTGGGCTTAGAAGGGTTGCGTTTGGGCATGCCAGGGTTAACCTCACCGG TGCTGCTAACATGTGTTTAGTGTTGTAAGGAGTAGTATGGTCTAGGCTTGTGATTCCTTAAGGACTAAAGCCGAGTTTTG TCATTTTCAGAGAAAAAGATGTTTGCTGCCGAATTTCTTAGGAACGAATTTGACACTTCACTATATTAATACATGAAATA CTTCGGATTTAAATTTATTCCTTTTGCTTTGGTTGGATTCCTGATTCATTTTTAGTGGTCCGGCCATGTTATGTGATTTT AGGCTTTCGTAATGCTATATATGTGACCTAAGCTTATAAGTTACTATACTTTGTTTTAGTAGGTTTAGGTGTTCAGAACC CATTAAAATTATTCAGATTGTATAATTTGTATTGCGATTTAGTGGAAATAGACTTCGTGATCATTGTCCCTTTAATTTGC TATCTTCTTCAGTCTGTAGAATCTTTCAATTGATTCTTATAATGACCAATAACTATATCTTTTTGGGTCGCTGATGTTTT TGGTGGTTCTAATATTATGATTATGTATTACTTTATCATTACTTGGGAGGTTTGTTTTCCACATTTTTTTTCTTGGCAAA TTGTGTAACTCATGTGATTTTGGATATGCATGCAATGTGTTCAGTCCATTGTTACTCACACGTAAAACACTTTAAGGAGG AATATAGATCAGTCCATTGTTACTCCTTCCATGTTCCTGACTTTGTTTTACTCTATCTTAAAGTTGATTGTTGAACTTGC TGCTATGTAGAGATTAGAGTATTGAAAAGCTTCATTAGATAATTTTGAAAGAGTAACTATTGGTAGAAAAACAAAATTCC ATGAAGGAAGAGTCCTCACTCAGTTTTCATTCAATTAATATCAAGACACAATATCATATACAAAAAATTAAAAACTACTT CTGGTACTCTTGTTTTTTCCTACAGGAACGCCTTTTGTTGAATTCTGCTTGGTTCTCTTAATTTCTTTTCGTCTACCAAA TAAATTCTTGTTAACTCCTTTCCTTTTTTTTGTCTTTGCTTTGATTTAAACTCAGAGGACAATATGTCTAGAAGATATGA TAGCCGCACAACAATCTTCTCTCCTGAAGGACGTCTTTACCAAGTGGAGTATGCAATGGAGGCCATCGGAAACGCTGGTA CTGCAATCGGGATCTTGTCAAAAGATGGGGTTGTTCTGGTTGGTGAGAAGAAAGTGACATCCAAGCTGCTGCAAACCTCA ACTTCCACTGAGAAAATGTACAAGATTGATGATCATGTTGCGTGCGCAGTGGCTGGGATCATGTCTGATGCCAACATCCT CATCAACACTGCTAGGATCCAAGCTCAACGTTACACTTTCGCGTACCAAGAGCCAATGCCTGTTGAGCAGTTGGTTCAAT CTCTTTGTGATACCAAGCAAGGTTACACACAATTCGGTGGTCTTCGGCCATTTGGAGTCTCATTCCTGTTCGCAGGGTGG GACAAAAATTTCGGCTTTCAACTTTACATGAGTGACCCTAGTGGAAATTATGGCGGATGGAAAGCTTCAGCTATTGGTGC CAACAACCAGGCAGCACAGTCAATTCTGAAACAGGACTACAAGGATGATATCACAAGGGAGGAAGCAGTTCAACTTGCAC TGAAGGTACTGAGTAAAACTATGGACAGCACAAGTCTCACCTCGGAAAAGCTTGAACTTGCAGAGGTATTCCTCTCACCC AATGGAGAAGTCAAGTATCAAGTTTGCTCCCCAGAAGCCTTGACGAAGCTGTTGGTCAAGTCTGGCGTGACCCAACCAGC AACAGACACTGCTTAGCTTGCTGTTCTATGAGGTTCTTAAATTCATATAGACGTCAATGAGTGTACTAAATTTATTTTTA AGGTCAAGCTCACAATCTTTTCATATCTTCATGATGCTAATAACTTTTGATATCCTGTATATTTCTTGATTTTCAGGACA TAGATCCATTATCTATGATATTTGCATCTACACACAAAGGTGCACATACGTATGCATGTATGGTTTACCGATTACTCTTT TGTTGTCCCTGTTGTTTGCCTTGGAGATTGTAGATTCTATGCTCATCTAGGTTCTCAATTTCAAGCAATTTTAAAAGTTG AGTAACATTACTCAGATTTCTGCTGATAGATTAGGTCTGTGACAGTTTTTGTCAGTTTTGTAAAATAACTGGTTGACAGT TATTTGCAGGTTGGAGGAAATTCTGTTGTAACTTTCCTTTAGAAGGAGGAAATAGGTTTGTTAGAGGGTATTCTGGAAAT TCTGTTGTGCTGGTCTGTCGAATACCAGTAACCATAGTTTCTTTGTTATTCTTTGGTAATAATAGTTTTCCAAATTTGCC AGTAATGTTAAATTCTTGCTTTTAG
CDS sequence (LotjaGi1g1v0445900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTAGAAGATATGATAGCCGCACAACAATCTTCTCTCCTGAAGGACGTCTTTACCAAGTGGAGTATGCAATGGAGGC CATCGGAAACGCTGGTACTGCAATCGGGATCTTGTCAAAAGATGGGGTTGTTCTGGTTGGTGAGAAGAAAGTGACATCCA AGCTGCTGCAAACCTCAACTTCCACTGAGAAAATGTACAAGATTGATGATCATGTTGCGTGCGCAGTGGCTGGGATCATG TCTGATGCCAACATCCTCATCAACACTGCTAGGATCCAAGCTCAACGTTACACTTTCGCGTACCAAGAGCCAATGCCTGT TGAGCAGTTGGTTCAATCTCTTTGTGATACCAAGCAAGGTTACACACAATTCGGTGGTCTTCGGCCATTTGGAGTCTCAT TCCTGTTCGCAGGGTGGGACAAAAATTTCGGCTTTCAACTTTACATGAGTGACCCTAGTGGAAATTATGGCGGATGGAAA GCTTCAGCTATTGGTGCCAACAACCAGGCAGCACAGTCAATTCTGAAACAGGACTACAAGGATGATATCACAAGGGAGGA AGCAGTTCAACTTGCACTGAAGGTACTGAGTAAAACTATGGACAGCACAAGTCTCACCTCGGAAAAGCTTGAACTTGCAG AGGTATTCCTCTCACCCAATGGAGAAGTCAAGTATCAAGTTTGCTCCCCAGAAGCCTTGACGAAGCTGTTGGTCAAGTCT GGCGTGACCCAACCAGCAACAGACACTGCTTAG
Protein sequence (LotjaGi1g1v0445900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGTAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIM SDANILINTARIQAQRYTFAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNFGFQLYMSDPSGNYGGWK ASAIGANNQAAQSILKQDYKDDITREEAVQLALKVLSKTMDSTSLTSEKLELAEVFLSPNGEVKYQVCSPEALTKLLVKS GVTQPATDTA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 241 | 241 | 5.5E-94 | ||
| PANTHER | 2 | 247 | 246 | 1.1E-137 | – | |
| PANTHER | 2 | 247 | 246 | 1.1E-137 | – | |
| CDD | 3 | 215 | 213 | 7.64294E-164 | – | |
| SUPERFAMILY | 4 | 227 | 224 | 9.57E-80 | ||
| ProSitePatterns | 5 | 27 | 23 | - | ||
| Pfam | 5 | 27 | 23 | 1.3E-13 | ||
| SMART | 5 | 27 | 23 | 3.4E-11 | ||
| ProSiteProfiles | 20 | 237 | 218 | 93.333 | ||
| Pfam | 30 | 214 | 185 | 6.3E-62 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain. | ||
| Molecular function | Threonine-type endopeptidase activity | Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile. | ||
| Cellular component | Proteasome core complex | A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex. | ||
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Cellular component | Proteasome core complex, alpha-subunit complex | The proteasome core subcomplex that constitutes the two outer rings of the proteasome core complex. An example of this component is found in Mus musculus. | ||
| Biological process | Proteolysis involved in cellular protein catabolic process | The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells. |
Expression pattern of LotjaGi1g1v0445900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…