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LotjaGi1g1v0447700.2

Overview

Field Value
Gene ID LotjaGi1g1v0447700
Transcript ID LotjaGi1g1v0447700.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|A0A0D3AQT1|A0A0D3AQT1_BRAOL Uncharacterized protein; Found in the gene: LotjaGi1g1v0447700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:94696325..94697015) extracted from Lotus japonicus Gifu genome v1.2.

ATGGTGAAAATGATTTTCACCCATTAGATTTAAATAAATGTATCAGGTAAAAACACTCACTTAACTCACTTATGTGCCTA TTTTTCTAAGCCTACTTGGACGTTCTGAAACCCTAAAACCCTATCTTCTTGTGCGCGCGCTTTCTTGCTCTCTGATTCGA TGGCTCGTACGAAGCAAACCGCTCGCAAATCCACCGGCGGAAAGGCACCGAGGAAGACGCTCACAACCAAGGCAGCACGG AAATCTGCTCCGACAACCGGCGGAGTGAAGAAGCCTCATCGCTATCGCCCTGGAACTGTTGCTCTGCGTGAGATCAGGAA ATACCAGAAGAGCACAGAGCTTCTCATCCGCAAGCTTCCATTCCAGCGTCTTGTTCGTGAGATTGCACAGGATTTCAAGA CCGATCTGCAATTCCAGAGCCATGCTGTTCTTGCTCTTCAGGAAGCTGCGGAGGCGTATCTGGTAGGTTTGTTCGAGGAT ACCAACCTGTGTGCCATTCATGCCAAGAGGGTCACCATTATGCCGAAGGATGTTCAACTCGCTCGCCGTATCCGTGGTGA ACGTGCTTAGTTAATTAGGCCTATCAATGGATTATAATTTTAGTTTCTAGCTTTTTCGTTATTTTCAGAATACGGTTCAT GTTTTTAGGGATGTCGTGGCGTTCAAGTTTCCTATGAATTTTGTGTAGTAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0447700.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTCGTACGAAGCAAACCGCTCGCAAATCCACCGGCGGAAAGGCACCGAGGAAGACGCTCACAACCAAGGCAGCACG GAAATCTGCTCCGACAACCGGCGGAGTGAAGAAGCCTCATCGCTATCGCCCTGGAACTGTTGCTCTGCGTGAGATCAGGA AATACCAGAAGAGCACAGAGCTTCTCATCCGCAAGCTTCCATTCCAGCGTCTTGTTCGTGAGATTGCACAGGATTTCAAG ACCGATCTGCAATTCCAGAGCCATGCTGTTCTTGCTCTTCAGGAAGCTGCGGAGGCGTATCTGGTAGGTTTGTTCGAGGA TACCAACCTGTGTGCCATTCATGCCAAGAGGGTCACCATTATGCCGAAGGATGTTCAACTCGCTCGCCGGATGTCGTGGC GTTCAAGTTTCCTATGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0447700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MARTKQTARKSTGGKAPRKTLTTKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK TDLQFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRMSWRSSFL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 18 18 - –
PANTHER
PTHR11426:SF224
1 131 131 2.1E-97 –
MobiDBLite
mobidb-lite
1 43 43 - –
Pfam
PF00125
1 131 131 8.3E-52
IPR007125
PANTHER
PTHR11426
1 131 131 2.1E-97
IPR000164
Gene3D
G3DSA:1.10.20.10
2 135 134 4.2E-75
IPR009072
SUPERFAMILY
SSF47113
2 133 132 8.71E-55
IPR009072
PRINTS
PR00622
3 17 15 3.5E-78
IPR000164
PRINTS
PR00622
17 31 15 3.5E-78
IPR000164
PRINTS
PR00622
34 55 22 3.5E-78
IPR000164
SMART
SM00428
34 136 103 9.4E-69
IPR000164
PRINTS
PR00622
58 75 18 3.5E-78
IPR000164
ProSitePatterns
PS00959
67 75 9 -
IPR000164
PRINTS
PR00622
80 98 19 3.5E-78
IPR000164
PRINTS
PR00622
98 114 17 3.5E-78
IPR000164
PRINTS
PR00622
114 135 22 3.5E-78
IPR000164

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0046982
Molecular function Protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0447700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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