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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0447800 |
| Transcript ID | LotjaGi1g1v0447800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G18020.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9LSK8|PP240_ARATH Pentatricopeptide repeat-containing protein At3g18020; TrEMBL-Plants: tr|K7MTQ0|K7MTQ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0447800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:94698213..94700993) extracted from Lotus japonicus Gifu genome v1.2.
AATAATTAAGTGATGAGTGTGAATTCTATAAACCTTTGCATGTTATTTTGGCATTATTGAAGTATGTCCGTGAAATAAGA GTGTAAGTGCACCAAAGTTGTCTTTCTTGGGTAACCATGCACAGAACCTTAGCAAGCTGTAGGTCATGCAAGGACTCACC TTCCTCATTTCCCTCAAACCCAAACCTTTCATTCCATTCTCCCTTCGATTCTCAACCACCATCGCCACCCCTTCATCTCC ATCACTTCAACACAGCATCGCCACCACACTCCACGCTCTCTGCGACTCCAACCGTTTCTCCGAAGCGCACCAATGCTTCT CCATTTCCCTCGCCTCCGGTTCCGTCCCCGACCACCGAACCTGCAACGTCCTCCTCGCTCGCTTGCTACGTTCCCGAACC CCACTTCAAACCTGGGCACTCGTCCGATCCTTGATCGTAGCCAAACCCGGTTTTGTTCCTTCTTTGGTCAATTACCATCG TTTGATGGACCAGTTTTGCGTGTTTCGTCGACCATGTGATGCTCACAGGATCTTTTTTGACATGAAGAATCGTGGGCATT GCCCCAATGTTGTTTCTTACACTACTTTGATTAATGGGTATTGCTCTGTTGGTGGGATTGGAGATGCACGTAAGGTGTTT GATGAAATGCTTGAGAGTGGTGTGGAACCGAATTCGTTGACTTACAGTGTTTTAATTCGTGGGGTTCTTCAGGAGAGGGA TTTGGAAGGTGGGAGGGAGCTGATGTGCAAGTTATGGGAGAGGATGAGTGTGGAAGTTGAATCGGGAGTGAAGGTTGCGG CTTTTGCAAATTTGGTTGATTCTTTGTGTAGGGAAGGGTTTTTCAATGAAGTGTTTAGAATTGCAGAAGAGTTGCCATGT CAGGGTAGTTTGGCTGAGGAGGTTGTTTATGGCCAGATGATTGATTCACTCTGCAAAGTTGGAAGGTATCATGGGGCAGC TAGGATTGTTTATGAGATGAAGAAGAGAGGATTTGTTCCAAGTGATGTGTTGTATAATTATATCATACATGGGCTTACCA AGGATGGTGATTGTATGAGGGGTTATCAATTGTTAGAGGAAGGAGTTGAATTTGGATTCTTGCTGTGTGACCATACTTAT AAGGTATTGGTGGAAGCTCTTTGCCATGTGTTTGATGTGGACAAGGCAAGGGAAGTTCTGAAACTCATGCTGCGTAAGGA AGGCGTTGATAAGACTAGGATTTACAACATCTACTTGAGAGCTCTTTGTCTTGTGAACAACACAACAGAGCTTTTGAATG TTCTTGTGTCTATGCTTGAGAGCCAATGTCGGGCTGATGTGATTACCCTCAATACGGTTATCAATGGGTTTTGCAAAACA GGAAGCGTTGACGAGGCTTTGAAAGTATTGCAGGACATGTTAATGGGCAAGTTTTGTGCACCTGATGTTGTTTCATTCAC TACAGTAATATCTGGTCTATTGGATGCTACAAGAGTCGATGAAGCTTTTGATCTTTTTCATAGAGTGATGCCTGAAAATG GTTTAAGACCTTGTGTTGTGACTTATAATGCTCTTATCCGAGGCCTATACAAACTGAAGAGACCGAATGATGCATTCGGA GTTTATAGTAGTATGGTAAGTGATGGCATTGGTGCAGATAGTACCACTTATACAATTATAGTAGAAGGTCTATGTGATTG TGATCAAATAGAAGAAGCAAAGAGTTTTTGGCATGATGTTATATGGCCTTCAGGGATTCATGATAATTTTGTTTATGCAG CAATTCTGAAAGGGCTCTGCCGCTCTGGAAATTTTAATGAGGCTTGTCATTTCTTGTATGAATTGGTAGATTCTGGGGTC TCTCCAAATATATTTAGTTATAATATTCTTATCAACTGTGCATGCCATCTAGATCTCAAAAGTGAAGCTTACCAAATTGT TAGAGAGATGAAAAAGAATGGACTGAACCCTGATTGTGTGACATGGAGGATTCTTCACAAGATACAAGGAAAAGTGAGGA AGCAAACTCTTTCTGAATATCAAAGCTTGTCAATAAATTATGAAGGTCAGGACATGGACAATAAATAAGTCAGGATAGAA GCAAATGGAAGTTTGTACTTTCGAACAAAAACAAAATTGGGTTTTAGTTCAGAGGATCTACAGCATGGATAAGGCATTGA CCTTTGAATAATATCAAAGAGGAGCATTGAACTAGGATGTCCAGGGCTAAACCTATGGATGTTACCTCATAACCACGATG CTGCAGACTTGCTGATGTACATATTATGGTAATATGTGACATCCAGAACATAGCTGAAACCGAGTGTGATTTGTACAATG ATTACGAATCAACGCTGGAAACAGTTTCTTGTGTAAAAGTCACGGTAAGGCTGCATACAATAGACCATGTGGTCAGTCCC TTCCCGGAACCCTCGATGGTTGTCCTTTTTTGATTATGAATCAGCGGTGAAATCAGCAGTTTCATATAAACTAGTTTCCT TACAAAGGCACATAGACAAGCTTCACATTTGAAGCAAATGAAATCTTCTATGCTAAGTTCAGTTCACCAATCACTTACAA TAATTAGCCAAGGAAGCCATTCTTGTATGAGCACTAATGTATTATAGACAGCCAATTTAAAGGCCTATTGAATTATTTTC ATATTTTCTTAAGCTCTTGGTTGGTTGTATAAAGATTGTGCTCATCTACAAATAAAAGGTCACATTACAAAAATATCCCA AGTATCAGAGCTGACAAGAGATCTTTTGATTTTGCAGGGTTAAATAGCTCAACTACGCATA
CDS sequence (LotjaGi1g1v0447800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAGGACTCACCTTCCTCATTTCCCTCAAACCCAAACCTTTCATTCCATTCTCCCTTCGATTCTCAACCACCATCGC CACCCCTTCATCTCCATCACTTCAACACAGCATCGCCACCACACTCCACGCTCTCTGCGACTCCAACCGTTTCTCCGAAG CGCACCAATGCTTCTCCATTTCCCTCGCCTCCGGTTCCGTCCCCGACCACCGAACCTGCAACGTCCTCCTCGCTCGCTTG CTACGTTCCCGAACCCCACTTCAAACCTGGGCACTCGTCCGATCCTTGATCGTAGCCAAACCCGGTTTTGTTCCTTCTTT GGTCAATTACCATCGTTTGATGGACCAGTTTTGCGTGTTTCGTCGACCATGTGATGCTCACAGGATCTTTTTTGACATGA AGAATCGTGGGCATTGCCCCAATGTTGTTTCTTACACTACTTTGATTAATGGGTATTGCTCTGTTGGTGGGATTGGAGAT GCACGTAAGGTGTTTGATGAAATGCTTGAGAGTGGTGTGGAACCGAATTCGTTGACTTACAGTGTTTTAATTCGTGGGGT TCTTCAGGAGAGGGATTTGGAAGGTGGGAGGGAGCTGATGTGCAAGTTATGGGAGAGGATGAGTGTGGAAGTTGAATCGG GAGTGAAGGTTGCGGCTTTTGCAAATTTGGTTGATTCTTTGTGTAGGGAAGGGTTTTTCAATGAAGTGTTTAGAATTGCA GAAGAGTTGCCATGTCAGGGTAGTTTGGCTGAGGAGGTTGTTTATGGCCAGATGATTGATTCACTCTGCAAAGTTGGAAG GTATCATGGGGCAGCTAGGATTGTTTATGAGATGAAGAAGAGAGGATTTGTTCCAAGTGATGTGTTGTATAATTATATCA TACATGGGCTTACCAAGGATGGTGATTGTATGAGGGGTTATCAATTGTTAGAGGAAGGAGTTGAATTTGGATTCTTGCTG TGTGACCATACTTATAAGGTATTGGTGGAAGCTCTTTGCCATGTGTTTGATGTGGACAAGGCAAGGGAAGTTCTGAAACT CATGCTGCGTAAGGAAGGCGTTGATAAGACTAGGATTTACAACATCTACTTGAGAGCTCTTTGTCTTGTGAACAACACAA CAGAGCTTTTGAATGTTCTTGTGTCTATGCTTGAGAGCCAATGTCGGGCTGATGTGATTACCCTCAATACGGTTATCAAT GGGTTTTGCAAAACAGGAAGCGTTGACGAGGCTTTGAAAGTATTGCAGGACATGTTAATGGGCAAGTTTTGTGCACCTGA TGTTGTTTCATTCACTACAGTAATATCTGGTCTATTGGATGCTACAAGAGTCGATGAAGCTTTTGATCTTTTTCATAGAG TGATGCCTGAAAATGGTTTAAGACCTTGTGTTGTGACTTATAATGCTCTTATCCGAGGCCTATACAAACTGAAGAGACCG AATGATGCATTCGGAGTTTATAGTAGTATGGTAAGTGATGGCATTGGTGCAGATAGTACCACTTATACAATTATAGTAGA AGGTCTATGTGATTGTGATCAAATAGAAGAAGCAAAGAGTTTTTGGCATGATGTTATATGGCCTTCAGGGATTCATGATA ATTTTGTTTATGCAGCAATTCTGAAAGGGCTCTGCCGCTCTGGAAATTTTAATGAGGCTTGTCATTTCTTGTATGAATTG GTAGATTCTGGGGTCTCTCCAAATATATTTAGTTATAATATTCTTATCAACTGTGCATGCCATCTAGATCTCAAAAGTGA AGCTTACCAAATTGTTAGAGAGATGAAAAAGAATGGACTGAACCCTGATTGTGTGACATGGAGGATTCTTCACAAGATAC AAGGAAAAGTGAGGAAGCAAACTCTTTCTGAATATCAAAGCTTGTCAATAAATTATGAAGGTCAGGACATGGACAATAAA TAA
Protein sequence (LotjaGi1g1v0447800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQGLTFLISLKPKPFIPFSLRFSTTIATPSSPSLQHSIATTLHALCDSNRFSEAHQCFSISLASGSVPDHRTCNVLLARL LRSRTPLQTWALVRSLIVAKPGFVPSLVNYHRLMDQFCVFRRPCDAHRIFFDMKNRGHCPNVVSYTTLINGYCSVGGIGD ARKVFDEMLESGVEPNSLTYSVLIRGVLQERDLEGGRELMCKLWERMSVEVESGVKVAAFANLVDSLCREGFFNEVFRIA EELPCQGSLAEEVVYGQMIDSLCKVGRYHGAARIVYEMKKRGFVPSDVLYNYIIHGLTKDGDCMRGYQLLEEGVEFGFLL CDHTYKVLVEALCHVFDVDKAREVLKLMLRKEGVDKTRIYNIYLRALCLVNNTTELLNVLVSMLESQCRADVITLNTVIN GFCKTGSVDEALKVLQDMLMGKFCAPDVVSFTTVISGLLDATRVDEAFDLFHRVMPENGLRPCVVTYNALIRGLYKLKRP NDAFGVYSSMVSDGIGADSTTYTIIVEGLCDCDQIEEAKSFWHDVIWPSGIHDNFVYAAILKGLCRSGNFNEACHFLYEL VDSGVSPNIFSYNILINCACHLDLKSEAYQIVREMKKNGLNPDCVTWRILHKIQGKVRKQTLSEYQSLSINYEGQDMDNK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 34 | 68 | 35 | 6.555 | ||
| PANTHER | 37 | 194 | 158 | 8.9E-114 | – | |
| Gene3D | 82 | 196 | 115 | 2.3E-25 | ||
| ProSiteProfiles | 106 | 140 | 35 | 8.769 | ||
| PANTHER | 140 | 351 | 212 | 8.9E-114 | – | |
| Pfam | 140 | 187 | 48 | 2.1E-17 | ||
| ProSiteProfiles | 141 | 175 | 35 | 13.767 | ||
| TIGRFAM | 143 | 177 | 35 | 1.3E-9 | ||
| ProSiteProfiles | 176 | 206 | 31 | 7.059 | ||
| Gene3D | 197 | 305 | 109 | 1.4E-16 | ||
| ProSiteProfiles | 216 | 250 | 35 | 7.344 | ||
| ProSiteProfiles | 251 | 285 | 35 | 11.477 | ||
| Pfam | 253 | 299 | 47 | 4.8E-8 | ||
| TIGRFAM | 253 | 286 | 34 | 3.9E-8 | ||
| ProSiteProfiles | 286 | 320 | 35 | 7.662 | ||
| Gene3D | 306 | 420 | 115 | 3.6E-21 | ||
| ProSiteProfiles | 321 | 351 | 31 | 7.684 | ||
| TIGRFAM | 323 | 351 | 29 | 6.2E-4 | ||
| Pfam | 324 | 351 | 28 | 0.029 | ||
| PANTHER | 337 | 455 | 119 | 8.9E-114 | – | |
| ProSiteProfiles | 356 | 390 | 35 | 6.993 | ||
| Pfam | 388 | 418 | 31 | 7.1E-11 | ||
| ProSiteProfiles | 391 | 425 | 35 | 11.148 | ||
| TIGRFAM | 393 | 427 | 35 | 2.5E-8 | ||
| Gene3D | 421 | 527 | 107 | 2.1E-24 | ||
| Pfam | 424 | 452 | 29 | 2.4E-6 | ||
| ProSiteProfiles | 427 | 462 | 36 | 11.137 | ||
| TIGRFAM | 429 | 462 | 34 | 4.5E-4 | ||
| PANTHER | 456 | 612 | 157 | 8.9E-114 | – | |
| Pfam | 462 | 511 | 50 | 8.8E-14 | ||
| ProSiteProfiles | 463 | 497 | 35 | 10.15 | ||
| TIGRFAM | 465 | 498 | 34 | 3.8E-7 | ||
| ProSiteProfiles | 498 | 528 | 31 | 7.574 | ||
| Gene3D | 529 | 639 | 111 | 2.5E-19 | ||
| ProSiteProfiles | 533 | 567 | 35 | 11.663 | ||
| Pfam | 533 | 581 | 49 | 7.9E-11 | ||
| TIGRFAM | 536 | 569 | 34 | 5.2E-7 | ||
| ProSiteProfiles | 568 | 602 | 35 | 11.422 | ||
| TIGRFAM | 570 | 604 | 35 | 1.6E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0447800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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