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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0447900 |
| Transcript ID | LotjaGi1g1v0447900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phosphatidylinositol transfer protein; TAIR: AT3G51670.1 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; Swiss-Prot: sp|Q9SCU1|PATL6_ARATH Patellin-6; TrEMBL-Plants: tr|A0A151RRX9|A0A151RRX9_CAJCA Patellin-6; Found in the gene: LotjaGi1g1v0447900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:94706658..94709499) extracted from Lotus japonicus Gifu genome v1.2.
CCTTCTTCTACTTCTTTTGTCTGTTCCTTTCCCCACTCTTACACACGCTACACTCAGAGCTAGTCCAAAATAAAGCTCTG TGGTTTCACAGAGAAACAACAACCCCATCTTCAAATCAACCTGCATTTTCCATTTTCAAGCAGAGATTCCATCTGGGTCT CCCTCAAATCCCCCACTTATCATCATCATCAATGGACACCTCAACATCTCCCTCACCCTCACCTTCTTCCAAGTCCATTC TCAACATCACCACACCCTTCCAAAACCTTCCAGATGCTTCCCCAAGGCCACACAAGAAAAGCATATTCACCACATTAATG GAAGCCACCACCACTTCCTTCAAAGAAGACACCTACTTGGTGTCCCACCTCAGAAATTCAGAGAAAAAGGCACTGCAAGA GTTCAAAGACAAGCTTTTGGCTTCTGGGGAGGTCAACAATGCTTCAATGTGGGGTGTTACTCTGCTTAATGGTGATGATA GAGCTGATGTGTTGCTCTTGAAGTTCCTTAGAGCCAGGGACTTCAGGGTTTGTGATGCTCTCAACATGCTCCTCAAGTGC TTGGCTTGGAGGAAAGAGTTTGGTGCTGACAACATTGTAGATGAGGAATTGGGGTTCAAAGAGCTTGAAGGGGTTGTAGC TTGTACTCAAGGGTATGATAGAGAGGGGCACCCTGTGTGCTACAATGATTATGGGGTGTTCAAAGACAAGGAAATGTATG AGAAGTTTTTTGGGGATGAAGAGAAGCTGAAGAAATTTTTGAGGTGGAGGGTTCAAGTTCTTGAAAGAGGAATCAAGCTT CTCCATTTCAAGCCTGGCGGGGTCAATTCTTTGATTCAGGTTACTGATCTTAAGGATATGCCCAAGAGAGAGCTCAGGGT TGCTTCTAATCAGATTCTCTCTCTGTTCCAAGACAACTATCCAGAAATGGTTGCAAGGAAGGTACTATAGAAACACCATT TTCTCTGTTTTTGCTGTTTTTATTTGGAAAAGGAAGACATGGTTCTTTGTTATTTTGGGCTTGTTTGTTTGTTATCAATG CCATATCATCTACATCTTTGGTATAATAGGACTTTCACTGTTCTGTTATCTCATTTTCTTGCTTTCAGATTTTCATCAAT GTGCCATGGTACTTCAGCATGTTGTATTCAATGTTCAGCCCATTTCTGACCCAAAGAACCAAGAGCAAGTTTGTGATATC TAAGGAAGGAAATGCTGCTGAGACACTCTACAAGTAAAGTCAAATGAACCATTACATTAGTTTTGATGTTTACTTGTGCA CAAATAAATTATTGTAGAAAAGTTTGATTTGTGTTCTTCCTGCTAATTTTATCTATACAAAGATTTCAAAATTGCCCTGA AATTGCTATCTATACAAAGATTTGTGTAAAATTTCAATTTTTTTATCTATACAAAGATTTGTCTAAAATTTTATTCTTGC TTTATTTGAAATTGAAGTTATCTTTCCTTCATTATCACATTGTTGCTACATTGCACCTTTATCAACCAAAATGTCTTTTT AACCCCAAAACTTTTCTTTTCTGTCTGTATTATTGAGGTGGGGTTGTTGTCTTTGGTTCAGATTTGTAAGGCCTGAGGAA ATTCCTGTAAGGTATGGAGGACTGTGTAGACCCAGCGATTTGCAGAATGGTCCCCCAAAACCAGCTTCTGAGTTCACAGT TAAAGGAGGAGAGAAAGTGAACATACAAATTGAAGGAATTGAGGTAACAACTTAGTGCTTGTTTGGATTATCCTTTGATC TTGGTAAAATTGAGCATATAGAAGTGAAATTAATGAGAAGTGATTTATGTTTGGATACATTTGTAAAAAAGTGATTTTGT TAGGTAAAATTGTGTTGCAAAATTCACAATTGATTATGTATTCATTGCAGGCTTCTACCTGATTTTATGTCTGAAATATA TTTTCTAAAATAAACATCAATTTTTTTTATCCATAATTGATTTTACCCTCCTATCTGATTTTAGGTCTGAAATAAATTCT CTAAAGTGAACTTCAATATTTTTATCAAGAATTGATTTTACCCTACCAGAATTGATTCATGTATTTGTTTTTGGTATTTA CTTGCTTTTGGATGATTAGTATGGTGCAACTATCACATGGGACATTGTGGTTGGAGGCTGGGACTTGGAATACAGTGCTG AGTTTGTCCCAAATGCAGAAGGTAGCTACACCATAGCAGTTGAGAAGGCAAGGAAGATTGAGGCCTCAGAAGAAGCAATC CATAACTCATTCACATTAAAAGAAGCAGGAAAAATGGTGCTCTCAGTAGATAACTCTGCTTCCAGGAAGAAGAAAGTTGC TGCTTATCGCTACATTGTCCGCAAATATAGCACACAGTCTGTATAATGTTTTGCTTGCAATGTTGTTTCTAACTTTTCAC TGTCACATTGAGCTTAAACGTAAAAAGTAGAATTTGTCTCGTTATCCAAACATGCCATTTGGGTTTGGAATAGAGGGAGA GAGAGTGGTACTTAGAGCAACTCCAACCCACAATTTCTTATTTGGTTTCTTAACACACTATTCGGCACTATTTTGCACTA TTTTTGTGGGCCCGCATTGACACATCAGACTTAAGAAACCACTAAGGAACTGAAGCAAATTTTGCTCCAACCCATGGTTT CTTAAATTACTATTTGAAGGGTCTCACCCGTGTCCCACCATAAATATTAATTAATATTTATAGGAATTTAATTTAAAATT AATTTTACTTATTATTTAAAACAATTAAATTTAAATATCAGCATATTAACTTAAAAATAAAATAACAATAAAAAACTTAT AAAAAAAAAAGAAAAACCGGTCAATTCATGCCCAAACGGGCA
CDS sequence (LotjaGi1g1v0447900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACACCTCAACATCTCCCTCACCCTCACCTTCTTCCAAGTCCATTCTCAACATCACCACACCCTTCCAAAACCTTCC AGATGCTTCCCCAAGGCCACACAAGAAAAGCATATTCACCACATTAATGGAAGCCACCACCACTTCCTTCAAAGAAGACA CCTACTTGGTGTCCCACCTCAGAAATTCAGAGAAAAAGGCACTGCAAGAGTTCAAAGACAAGCTTTTGGCTTCTGGGGAG GTCAACAATGCTTCAATGTGGGGTGTTACTCTGCTTAATGGTGATGATAGAGCTGATGTGTTGCTCTTGAAGTTCCTTAG AGCCAGGGACTTCAGGGTTTGTGATGCTCTCAACATGCTCCTCAAGTGCTTGGCTTGGAGGAAAGAGTTTGGTGCTGACA ACATTGTAGATGAGGAATTGGGGTTCAAAGAGCTTGAAGGGGTTGTAGCTTGTACTCAAGGGTATGATAGAGAGGGGCAC CCTGTGTGCTACAATGATTATGGGGTGTTCAAAGACAAGGAAATGTATGAGAAGTTTTTTGGGGATGAAGAGAAGCTGAA GAAATTTTTGAGGTGGAGGGTTCAAGTTCTTGAAAGAGGAATCAAGCTTCTCCATTTCAAGCCTGGCGGGGTCAATTCTT TGATTCAGGTTACTGATCTTAAGGATATGCCCAAGAGAGAGCTCAGGGTTGCTTCTAATCAGATTCTCTCTCTGTTCCAA GACAACTATCCAGAAATGGTTGCAAGGAAGATTTTCATCAATGTGCCATGGTACTTCAGCATGTTGTATTCAATGTTCAG CCCATTTCTGACCCAAAGAACCAAGAGCAAGTTTGTGATATCTAAGGAAGGAAATGCTGCTGAGACACTCTACAAATTTG TAAGGCCTGAGGAAATTCCTGTAAGGTATGGAGGACTGTGTAGACCCAGCGATTTGCAGAATGGTCCCCCAAAACCAGCT TCTGAGTTCACAGTTAAAGGAGGAGAGAAAGTGAACATACAAATTGAAGGAATTGAGTATGGTGCAACTATCACATGGGA CATTGTGGTTGGAGGCTGGGACTTGGAATACAGTGCTGAGTTTGTCCCAAATGCAGAAGGTAGCTACACCATAGCAGTTG AGAAGGCAAGGAAGATTGAGGCCTCAGAAGAAGCAATCCATAACTCATTCACATTAAAAGAAGCAGGAAAAATGGTGCTC TCAGTAGATAACTCTGCTTCCAGGAAGAAGAAAGTTGCTGCTTATCGCTACATTGTCCGCAAATATAGCACACAGTCTGT ATAA
Protein sequence (LotjaGi1g1v0447900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDTSTSPSPSPSSKSILNITTPFQNLPDASPRPHKKSIFTTLMEATTTSFKEDTYLVSHLRNSEKKALQEFKDKLLASGE VNNASMWGVTLLNGDDRADVLLLKFLRARDFRVCDALNMLLKCLAWRKEFGADNIVDEELGFKELEGVVACTQGYDREGH PVCYNDYGVFKDKEMYEKFFGDEEKLKKFLRWRVQVLERGIKLLHFKPGGVNSLIQVTDLKDMPKRELRVASNQILSLFQ DNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNAAETLYKFVRPEEIPVRYGGLCRPSDLQNGPPKPA SEFTVKGGEKVNIQIEGIEYGATITWDIVVGGWDLEYSAEFVPNAEGSYTIAVEKARKIEASEEAIHNSFTLKEAGKMVL SVDNSASRKKKVAAYRYIVRKYSTQSV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 27 | 27 | - | – | |
| MobiDBLite | 1 | 32 | 32 | - | – | |
| PANTHER | 28 | 423 | 396 | 1.8E-227 | – | |
| PANTHER | 28 | 423 | 396 | 1.8E-227 | – | |
| Gene3D | 56 | 335 | 280 | 7.9E-62 | ||
| SUPERFAMILY | 57 | 139 | 83 | 7.46E-15 | ||
| Pfam | 67 | 121 | 55 | 3.5E-10 | ||
| SMART | 98 | 123 | 26 | 1.8E-4 | ||
| SMART | 137 | 308 | 172 | 8.1E-44 | ||
| CDD | 142 | 306 | 165 | 4.25322E-35 | ||
| SUPERFAMILY | 143 | 308 | 166 | 3.53E-41 | ||
| Pfam | 144 | 305 | 162 | 4.4E-31 | ||
| ProSiteProfiles | 154 | 311 | 158 | 18.168 | ||
| ProSiteProfiles | 305 | 421 | 117 | 11.237 | ||
| SUPERFAMILY | 322 | 423 | 102 | 2.09E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0447900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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