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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0451400 |
| Transcript ID | LotjaGi1g1v0451400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT2G38420.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q8L6Y7|PP193_ARATH Pentatricopeptide repeat-containing protein At2g38420, mitochondrial; TrEMBL-Plants: tr|V7B2Q8|V7B2Q8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0451400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:95068504..95072183) extracted from Lotus japonicus Gifu genome v1.2.
CTAAACTATCAATTGTGCCGGAATTTCATGGTTTACTTTGGGTGATTTAAAGAACCTCATATAACGTGCCTGCACCGAAT GTATAATCCTATGATTTTACCTCAGCCAATTTCAACCTAAGGTTTTGATTTATCTTCAGAACTCACTCAATCCCAATCCC CAAAAATTCAATCTCTCTAGTTTCTCTGCTCCTCATCATATCCAAAATGGTGAGACACCCTTTATCCAAAACTGCCAACA AATACCTCAGAAAATTCAGAAAATGGCCACACTCTCCTTACAAGACCTCATGGCACCACAACTTTGGTGAACAACAAGCT ATGAACATTCTCATAAAACAAGCAGCAACCATTGAAACATGTTCCTCTTCCTCCCAACAAATCCAAACACAGAACAACAA CCCTTTTCTCCTTTCTACTCTCATTGACTCCTTCAAATCTTATAGCTGTGACCCAACTCCAAATGCTTACTACTTTCTCA TCAAAACCTTAGTCAACACCTCCCATTTGCAGGACATTCCTCCTGTTCTCGACCACCTTGAACGCGTGGAGAAGTTTGAA ACACCTGAGTTCATCTTTGTGTACCTTATTAGATTCTATGGTCTTGCTGATAGGATCCAAGATGCTGTTGATTTGTTCTT CAGAATCCCCAGGTTCAGGTGCACACCAACTGTTTGTTCTTTGAACTTGTTGCTGTCATTGCTTTGTAGGAAGAGGGAGT GCCTCAGAATGGTTCCCCAGATCTTGTTAAAGAGCCAGCACATGAAAATTCGCATTGAGGAGTCGACTTTTCGGGTTTTG ATCAGTGCCTTGTGCAGAATTAGGAGAGTGGATTATGCTGTTAAGATACTGAATTGTATGATAGAGGATGGTTTTGGTTT GGATGGGAAGATATGTTCGTTGATAATATCATCATTGTGTGAACAAAATGATGTGACTAGTGCTGAGGCTTTGGTTGTTT GGGGAGACATGAGGAAACTGGGGTTTTGTCCTGGGGTAATGGATTTTACGGATATGATTAGGTTCTTGGTGAAGGAAGAG AGGGGTATGGATGCTTTGTATATTCTGAACCAGATGAAACAAGATGGAATAAAGCCTGATGTTGTTTGTTATACTATCGT TTTGAGTGGCATTGTTGCGGAAGGGGATTATGTGAAGCTAGATGAACTATTTGATGAAATGCTTGTATTGGGACTCATTC CTGATGTTTACACTTACAATGTGTATATAAATGGTTTGTGTAAGCAGAATAAAGTGGATGAGGCTATTCAGATTGTTGAT TCTATGATCAAGCTAGGATGCAAACCAAATGTGGTTACTTGCAATACTTTACTGGGTGCTCTCTGTGAGGCCGGAGATTT AAGTAAGGCTAAGGGGGTAATGAAGGAGATGGGGTTGAAAGGTGTTGAGCTCAACTTGCATACATACAGGATCATGCTTG ATGGTTTGGTTGGTAAAGCTGAGATTGGTGAAGCATCTCTTTTGTTGGAGGAAATGTTGAAGAAGTGTTTTTATCCTAGA TCTTCAACATTTGATAATATCATATGTTGCATGTGCCAAAAGGGCTTAATTAACGAAGCACTAGAATTGATGAAGAAAAT TGTTGCAAAAAGTTTTGCTCCAGGAGCCAGGGCCTGGGAAGCTCTGCTTCTTCATTCGGGATCTGATCTCACATATTCAG AAACCACGTTTGCTGGCTTGTTCAACCAAAATTAATCCCTGTGAGTTATAAAGTGGCCCTTATGTTAGACTTTGAAGTTT ATTGGCTCTCTATGTATTTGGTTTGAAGAGCTAAACTATATCCCCAGTTAACTAACTAGAGAGATTTAAATCTTCATATT ATCTTTTTTTTAAATCTTCATATAGACTTTGAAATATATGAGAGTCTACATATCTTTTCAGAACAAGGCTTTTTGGTCTT GATGGTGATGTATTCATTGAAAAGTGTTTAGAATTAAACTGTACAATGATTTTCTATTTTCAGTTGTTCACTGCTGAACC ATGCTCAAGTTGGTCTGGTTTGTTACTTTTGAACTAAAACAAACTCTTCCCTTAGTACTTTGTATATCATGAAACTAAAA TCTTGGGTGTTCGGCTGATATCCGCCTAGGGATGGCAATGGGTCGGGTAGGGTGCGGGTTTTGCCAAACCCAAACCCAAA CCCGAAATCAAAAACCCACACCCGCACCCGCACCCGAATCCGAAATGGGTGGTGAACTTAAACCCACACCCGAACCCATT GGGTTTCGGGTTCACCCGACCCGTACCCACACCCGCACACAACCTCAAACAAACAGTTGAACTCGGAAACCCGACCTGAA AAAGACTGTGAAGAGAGCTATATTATGTAATGTAACATTGTAATTGCCATGTTACTGTTAAATTAATATGCAAGATGCTG CATATATTGTATTGCATAAGCAGAATACTTAGGTTTCATTTATACAGATCCGGGTTCGGGTAGGGTTCGGGTGCGGGTTT GGCCAAACCCAAACCCGAACCCGAAAGTGATCGGGTAAAACCCGAACCCGAACCCGAACCCATTTAACTCGGGTTTTCAC CCAAGAAATCGGGTCGGGTCGGGTCGGGTGCCCATGGGTTCGGGCTTCTCTGCCATCCCTATATCCGCCAGTTTAAAAAC ATTTTTTGAAGGGGGAAAGCACTTCTTAGTAGTTAGTTCTTATATTTGAAAACATACAAAAATTAATTTCAGCTTCTGAA AAAATCGTTTAAAATAAAATCAACTTTATCCCTCTACGTCGTCGTCTAGCAGATTGGGAAGATGAACAACTTCATAATTT GGCGCTGTGAATGCAATCATCCTGCAGCTGAAAGAGAGGATTCTGCTTGCTGGGCTCTTGATAGCTGTGGGTTTTTTTCT GTAAAATCTATACTCTGATGGAACTAAAAGTGTTTGGGGCGGTTGATTTGAAAATGGCAAAATGCACAGGTACATTAAGA AAAAGTTTCCACCAAAAGTGTCCCTATTTGTGTGATGGCTAGACAAAGTAAGATGCCTTCAAAGCAGAATCTTAGTGTTC GAGAAGTGAATCTTGAAGATGGGTACTTTTGTAGTATTTGCAAGGCTGATGCTGAATCGGTTGATCATCTACCTCCATTG CTATCAAAGCTGGCTGGTATGGACCGAAGCAATTGAGAGAGGGAAAAGTTTCTTGGGTGTGTCCAGCTTCCATTGAAGTG CTACTTGTGGATTGAGTTTCAATGACTCATTGTTTTGATCATACTGTTTGGAACTTAATTCCCTACTCAATTTGCTGGGC AATTTGGATGGAGAGGAATGAGCTTATTTTCATTAGTGTTCCTTTCAATACAGCTAAGGACTGGTCTGGTGGATTAAAGT AAAATGGAGAACTATCCCTATTAATTTTCGCAAGCTCATGAAAATGTTGAAAAAGTAAAATTGTCGCTCCCTACAAAGAA GCTACGACATGCTATCTGGATATTGGTGGTGTACTCTGGAACAGGAAGAACTGTGGTGGGGTGTTTTTGGCATCAAATGA GCCAACAAAGCAGAGGTGCTTGCTATTTTGAATTCATTACATTTTGTATTGAGTTTAGTTCTCCAACATTATCATCGAAT GTGACTCATCACCAGCGGTTGGATGTGTGAATAACCCCTCTAAAGAGGGCATGGAAACTTATCAATCAATTAAATCTCAT
CDS sequence (LotjaGi1g1v0451400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAGACACCCTTTATCCAAAACTGCCAACAAATACCTCAGAAAATTCAGAAAATGGCCACACTCTCCTTACAAGAC CTCATGGCACCACAACTTTGGTGAACAACAAGCTATGAACATTCTCATAAAACAAGCAGCAACCATTGAAACATGTTCCT CTTCCTCCCAACAAATCCAAACACAGAACAACAACCCTTTTCTCCTTTCTACTCTCATTGACTCCTTCAAATCTTATAGC TGTGACCCAACTCCAAATGCTTACTACTTTCTCATCAAAACCTTAGTCAACACCTCCCATTTGCAGGACATTCCTCCTGT TCTCGACCACCTTGAACGCGTGGAGAAGTTTGAAACACCTGAGTTCATCTTTGTGTACCTTATTAGATTCTATGGTCTTG CTGATAGGATCCAAGATGCTGTTGATTTGTTCTTCAGAATCCCCAGGTTCAGGTGCACACCAACTGTTTGTTCTTTGAAC TTGTTGCTGTCATTGCTTTGTAGGAAGAGGGAGTGCCTCAGAATGGTTCCCCAGATCTTGTTAAAGAGCCAGCACATGAA AATTCGCATTGAGGAGTCGACTTTTCGGGTTTTGATCAGTGCCTTGTGCAGAATTAGGAGAGTGGATTATGCTGTTAAGA TACTGAATTGTATGATAGAGGATGGTTTTGGTTTGGATGGGAAGATATGTTCGTTGATAATATCATCATTGTGTGAACAA AATGATGTGACTAGTGCTGAGGCTTTGGTTGTTTGGGGAGACATGAGGAAACTGGGGTTTTGTCCTGGGGTAATGGATTT TACGGATATGATTAGGTTCTTGGTGAAGGAAGAGAGGGGTATGGATGCTTTGTATATTCTGAACCAGATGAAACAAGATG GAATAAAGCCTGATGTTGTTTGTTATACTATCGTTTTGAGTGGCATTGTTGCGGAAGGGGATTATGTGAAGCTAGATGAA CTATTTGATGAAATGCTTGTATTGGGACTCATTCCTGATGTTTACACTTACAATGTGTATATAAATGGTTTGTGTAAGCA GAATAAAGTGGATGAGGCTATTCAGATTGTTGATTCTATGATCAAGCTAGGATGCAAACCAAATGTGGTTACTTGCAATA CTTTACTGGGTGCTCTCTGTGAGGCCGGAGATTTAAGTAAGGCTAAGGGGGTAATGAAGGAGATGGGGTTGAAAGGTGTT GAGCTCAACTTGCATACATACAGGATCATGCTTGATGGTTTGGTTGGTAAAGCTGAGATTGGTGAAGCATCTCTTTTGTT GGAGGAAATGTTGAAGAAGTGTTTTTATCCTAGATCTTCAACATTTGATAATATCATATGTTGCATGTGCCAAAAGGGCT TAATTAACGAAGCACTAGAATTGATGAAGAAAATTGTTGCAAAAAGTTTTGCTCCAGGAGCCAGGGCCTGGGAAGCTCTG CTTCTTCATTCGGGATCTGATCTCACATATTCAGAAACCACGTTTGCTGGCTTGTTCAACCAAAATTAA
Protein sequence (LotjaGi1g1v0451400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVRHPLSKTANKYLRKFRKWPHSPYKTSWHHNFGEQQAMNILIKQAATIETCSSSSQQIQTQNNNPFLLSTLIDSFKSYS CDPTPNAYYFLIKTLVNTSHLQDIPPVLDHLERVEKFETPEFIFVYLIRFYGLADRIQDAVDLFFRIPRFRCTPTVCSLN LLLSLLCRKRECLRMVPQILLKSQHMKIRIEESTFRVLISALCRIRRVDYAVKILNCMIEDGFGLDGKICSLIISSLCEQ NDVTSAEALVVWGDMRKLGFCPGVMDFTDMIRFLVKEERGMDALYILNQMKQDGIKPDVVCYTIVLSGIVAEGDYVKLDE LFDEMLVLGLIPDVYTYNVYINGLCKQNKVDEAIQIVDSMIKLGCKPNVVTCNTLLGALCEAGDLSKAKGVMKEMGLKGV ELNLHTYRIMLDGLVGKAEIGEASLLLEEMLKKCFYPRSSTFDNIICCMCQKGLINEALELMKKIVAKSFAPGARAWEAL LLHSGSDLTYSETTFAGLFNQN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 61 | 247 | 187 | 5.0E-17 | ||
| PANTHER | 82 | 337 | 256 | 5.3E-80 | – | |
| PANTHER | 82 | 337 | 256 | 5.3E-80 | – | |
| ProSiteProfiles | 120 | 154 | 35 | 6.928 | ||
| ProSiteProfiles | 191 | 225 | 35 | 9.591 | ||
| TIGRFAM | 194 | 226 | 33 | 0.0011 | ||
| Pfam | 194 | 223 | 30 | 1.3E-4 | ||
| ProSiteProfiles | 226 | 262 | 37 | 8.747 | ||
| Gene3D | 248 | 347 | 100 | 2.0E-23 | ||
| Pfam | 253 | 310 | 58 | 1.1E-7 | ||
| PANTHER | 258 | 414 | 157 | 5.3E-80 | – | |
| PANTHER | 258 | 414 | 157 | 5.3E-80 | – | |
| ProSiteProfiles | 263 | 297 | 35 | 8.364 | ||
| TIGRFAM | 268 | 299 | 32 | 5.3E-5 | ||
| ProSiteProfiles | 298 | 332 | 35 | 9.767 | ||
| TIGRFAM | 300 | 334 | 35 | 2.5E-5 | ||
| PANTHER | 321 | 475 | 155 | 5.3E-80 | – | |
| PANTHER | 321 | 475 | 155 | 5.3E-80 | – | |
| Pfam | 332 | 380 | 49 | 1.9E-17 | ||
| ProSiteProfiles | 333 | 367 | 35 | 13.636 | ||
| TIGRFAM | 335 | 369 | 35 | 9.3E-11 | ||
| Gene3D | 348 | 493 | 146 | 1.7E-31 | ||
| ProSiteProfiles | 368 | 402 | 35 | 11.071 | ||
| TIGRFAM | 370 | 403 | 34 | 7.2E-7 | ||
| ProSiteProfiles | 403 | 437 | 35 | 9.153 | ||
| Pfam | 406 | 434 | 29 | 0.97 | ||
| ProSiteProfiles | 438 | 472 | 35 | 9.339 | ||
| TIGRFAM | 441 | 473 | 33 | 7.9E-4 | ||
| Pfam | 441 | 468 | 28 | 0.011 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0451400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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