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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0456700 |
| Transcript ID | LotjaGi1g1v0456700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G16710.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial; TrEMBL-Plants: tr|A0A0L9U3K0|A0A0L9U3K0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0456700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:96006099..96008858) extracted from Lotus japonicus Gifu genome v1.2.
CTTCCTCCATAGCCTGTAATAATATCAGCAAATGCCATGCGAATGCAGAATCCATCTTCAAAGACACACAGTCACCATCT CTTCCTCCTCCACAATCCATGACTATGGCTCCTTCACTTCCCACATACCTCCAAATTTTCCAACCTTATCCACTTCACAC CCCTCTTTTCACCACCAACAATGGCATCTTCAGAACCCGACCCAGTAAGCAACCCGTTCCAAAGAAACTCTCTTTCTCCG CCACCAATCTTTCACTCCAACAAACAAACACTTCACCCATCAAACAGACAACAACAAATGACCTCGTTGATTTTGAGGAT AGAACCACTAGGTTCCGAATCAAGGGTCTTGTCGACAGAATCACATCACTGTCTTCCTCAAACAGCAAAACCCAGATGAT GGTTCAAATCCTAGAGAACAGAGATGCTGAGTTTCAAACCATATCAGATTTCAACCACCTTCTCATGGCTCTAGTGGTTG CACATGAGCCTGAGGTTTGTCTCAGCATCTTCAAAGAGCTTCCATCTTTTGAAGTTGAACCAGATTGCTGCACTTACTCC ATCATGATAAGGTGCCACTGTGAGAAAAACGATGTGGATGAAGCTAAGAAAGTGTTGGAGGGTGTTCTGGATAATGGGTC TCAACCAGATGCTGCAACTGTTACTGTTCTTGTGAATTCACTTTGTAAGAGGGGGAAGGTGCAGAAGGCTATGGAGGTTT TTGAGCTTATGGGGAAAGTGGGTTCTAGGCCTGGTGTTCAGGCATATAACTGTTTGCTGAAGGGGTTGTCTTATGTGGGG AAAGTGGAACAAGCGTTTGATATGTTGATGGGGATGAAGGGAACTTCATTGGAGCCTGATGTTTATTCTTACACTGCTGT GATGGATGGGTTGTGCAAAGTGGGTCGTTCTGATGAAGCAATGGAGTTGCTGAATGAAGCTGTTGAAATGGGATTAGCAC CTAATGTGGTGGCTTTTAACACACTGCTACAAGGGTATTCAAGGGAAGGGAGGCCAATGGAAGGTGTTTCTGTTCTGAAG ATGATGCAGAAGCATGGGTGTGTTCCTGATTGTATTAGCTATAGTACTGTGTTGCATGGGTTGCTGAAATGGAATGAAGT TCTAGCAGCCCTTGAGGTTTACAAGGAAATGGTGGGACTTGGGTTGGAAGTGAATGTGAGGATTATGGGGGCACTTGTGA GGCGTTTGTGTAAGAGGTCATGGAAGGAAAGAGGTCTGCTTCAGGATGCAGAGGAGGTGTTTGAGAAAATGAAAGAGAGA GGCTTGGTGGTTGATCATAGGACACTTGAGGTGATGGTTCAGACATTGTGTAGGGAAAAGAGATTTGATGAGGCTTTTGC CAATTTGAATGATATGGTTAGGTTGGGTTATTCTGCTGGGGCATTTACTTTTCACAATGTGATTCAAGGCCTTTGTTCTA GGGGGAAAGTGGATGAGGGAGTGTCAACTTTTATCCTTTTGCATGCAAGTGGAGGAATCCCTGATAGAATTTCTTACGAC GTATTGATCAAGGAACTTAATGCGCGGGGGAGAGTGTCTTGTGCTTCCTATTTGTTTGGTGCCGCGCTGAAGCAAGGTCT TGTTCCCAACAGGGTACCTATGCTATGTGAATATTATGAAATTGAGGAGGGAGGAACTGTAACTGATACAGAGGAGTTAG TCACTAGTCAGCAACTCAAGCTGGCCTAGAGTTGCTGATATGGAAATTTAGCTGTAAGTGGATGACGAGTTTCATGTTAA GGTTAAGGGAGCGAAGCAGGTAAGTCGTAATCGGAGGCATGTCAGCGGCAAAGCTAGGAAGTTTATCTTTTAGGAGGGGG GAAACTAGTTGAGTTTGGTGCTTCTGTTTTAAGGTGCAATGATATGGGTTTGTTGATATGTTTCCCTGAGGTGTATGAAA AGAGGTGCTACTTTTGCTTTGAGTGAAATGTAAAGTAGAGGTTCAATTAGATGGAAATAAAATAGCATTAGTGCTGTGTA TGGATTCAGGATTCATGTGAGTTATGGACTTATCGTGGCCGCTTTCTCTTTTGTTGTGAATGACAATACTCTGGTGAGTT CGATTTGTAGTGTGTGTAGATCATGGATATGTGATGAATGTGGGAAGATGATCTAGGGTGTTATGAAGCCTTGAGAGAAG TGAGGTGATGCAAAGGTGAGGGGTGGCCACTAACATAATATGTACTATAACTAAGAAAATTCCACACTTTATTTTCTCCA CTTGTTACTATCTTTTTTTTTTCTTTTCATGTTACACCGCTCATCACATCTTTTATCTACACTCTCTTTTCGTTTTATCT CTCTCATCTCTCCCATAGCTCATACAGCTTTGCAAGTGTGTATGTCTGAGAAAATATTTTAAAGTTGGAAGGGTCATGGT TCCCTTTCCCCCTGCCCCGTCCATCTGCATTGAGGACTGTTTTGTTTACCTTCTCTCATGAGCACCTTCTTCATCCTTTA CTCTGGTTCATGGTTCTCTTCCTCCTCATTTCTTTTACTTATCTTTTAACTGTATAGTAGATGTGACGACTATCTGTACC TAACATTCATGAGTATTGAGTTATCAATAGTATTCTCAGATTTATGTAAAATTCCACTGGTATCAATCTGCTCGGCAAAA CTGAAATGAGATTACAAGATTCCATATAAGTAAGCCGATTTCTTGAAATACAAAAAATCCTTACATTAACTACTATGCAC AAATTGTATTGGTTGGTGTTTTCTAATTTAATCCCAAGGA
CDS sequence (LotjaGi1g1v0456700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTATGGCTCCTTCACTTCCCACATACCTCCAAATTTTCCAACCTTATCCACTTCACACCCCTCTTTTCACCACCAA CAATGGCATCTTCAGAACCCGACCCAGTAAGCAACCCGTTCCAAAGAAACTCTCTTTCTCCGCCACCAATCTTTCACTCC AACAAACAAACACTTCACCCATCAAACAGACAACAACAAATGACCTCGTTGATTTTGAGGATAGAACCACTAGGTTCCGA ATCAAGGGTCTTGTCGACAGAATCACATCACTGTCTTCCTCAAACAGCAAAACCCAGATGATGGTTCAAATCCTAGAGAA CAGAGATGCTGAGTTTCAAACCATATCAGATTTCAACCACCTTCTCATGGCTCTAGTGGTTGCACATGAGCCTGAGGTTT GTCTCAGCATCTTCAAAGAGCTTCCATCTTTTGAAGTTGAACCAGATTGCTGCACTTACTCCATCATGATAAGGTGCCAC TGTGAGAAAAACGATGTGGATGAAGCTAAGAAAGTGTTGGAGGGTGTTCTGGATAATGGGTCTCAACCAGATGCTGCAAC TGTTACTGTTCTTGTGAATTCACTTTGTAAGAGGGGGAAGGTGCAGAAGGCTATGGAGGTTTTTGAGCTTATGGGGAAAG TGGGTTCTAGGCCTGGTGTTCAGGCATATAACTGTTTGCTGAAGGGGTTGTCTTATGTGGGGAAAGTGGAACAAGCGTTT GATATGTTGATGGGGATGAAGGGAACTTCATTGGAGCCTGATGTTTATTCTTACACTGCTGTGATGGATGGGTTGTGCAA AGTGGGTCGTTCTGATGAAGCAATGGAGTTGCTGAATGAAGCTGTTGAAATGGGATTAGCACCTAATGTGGTGGCTTTTA ACACACTGCTACAAGGGTATTCAAGGGAAGGGAGGCCAATGGAAGGTGTTTCTGTTCTGAAGATGATGCAGAAGCATGGG TGTGTTCCTGATTGTATTAGCTATAGTACTGTGTTGCATGGGTTGCTGAAATGGAATGAAGTTCTAGCAGCCCTTGAGGT TTACAAGGAAATGGTGGGACTTGGGTTGGAAGTGAATGTGAGGATTATGGGGGCACTTGTGAGGCGTTTGTGTAAGAGGT CATGGAAGGAAAGAGGTCTGCTTCAGGATGCAGAGGAGGTGTTTGAGAAAATGAAAGAGAGAGGCTTGGTGGTTGATCAT AGGACACTTGAGGTGATGGTTCAGACATTGTGTAGGGAAAAGAGATTTGATGAGGCTTTTGCCAATTTGAATGATATGGT TAGGTTGGGTTATTCTGCTGGGGCATTTACTTTTCACAATGTGATTCAAGGCCTTTGTTCTAGGGGGAAAGTGGATGAGG GAGTGTCAACTTTTATCCTTTTGCATGCAAGTGGAGGAATCCCTGATAGAATTTCTTACGACGTATTGATCAAGGAACTT AATGCGCGGGGGAGAGTGTCTTGTGCTTCCTATTTGTTTGGTGCCGCGCTGAAGCAAGGTCTTGTTCCCAACAGGGTACC TATGCTATGTGAATATTATGAAATTGAGGAGGGAGGAACTGTAACTGATACAGAGGAGTTAGTCACTAGTCAGCAACTCA AGCTGGCCTAG
Protein sequence (LotjaGi1g1v0456700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTMAPSLPTYLQIFQPYPLHTPLFTTNNGIFRTRPSKQPVPKKLSFSATNLSLQQTNTSPIKQTTTNDLVDFEDRTTRFR IKGLVDRITSLSSSNSKTQMMVQILENRDAEFQTISDFNHLLMALVVAHEPEVCLSIFKELPSFEVEPDCCTYSIMIRCH CEKNDVDEAKKVLEGVLDNGSQPDAATVTVLVNSLCKRGKVQKAMEVFELMGKVGSRPGVQAYNCLLKGLSYVGKVEQAF DMLMGMKGTSLEPDVYSYTAVMDGLCKVGRSDEAMELLNEAVEMGLAPNVVAFNTLLQGYSREGRPMEGVSVLKMMQKHG CVPDCISYSTVLHGLLKWNEVLAALEVYKEMVGLGLEVNVRIMGALVRRLCKRSWKERGLLQDAEEVFEKMKERGLVVDH RTLEVMVQTLCREKRFDEAFANLNDMVRLGYSAGAFTFHNVIQGLCSRGKVDEGVSTFILLHASGGIPDRISYDVLIKEL NARGRVSCASYLFGAALKQGLVPNRVPMLCEYYEIEEGGTVTDTEELVTSQQLKLA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 84 | 233 | 150 | 9.8E-30 | ||
| PANTHER | 114 | 281 | 168 | 2.6E-91 | – | |
| ProSiteProfiles | 114 | 148 | 35 | 6.884 | ||
| Pfam | 146 | 174 | 29 | 9.8E-9 | ||
| ProSiteProfiles | 149 | 183 | 35 | 10.852 | ||
| TIGRFAM | 151 | 185 | 35 | 3.1E-7 | ||
| Pfam | 179 | 211 | 33 | 6.0E-8 | ||
| ProSiteProfiles | 184 | 218 | 35 | 11.488 | ||
| TIGRFAM | 187 | 218 | 32 | 4.5E-6 | ||
| Pfam | 218 | 267 | 50 | 5.0E-14 | ||
| ProSiteProfiles | 219 | 253 | 35 | 9.295 | ||
| TIGRFAM | 222 | 255 | 34 | 1.5E-4 | ||
| PANTHER | 234 | 373 | 140 | 2.6E-91 | – | |
| Gene3D | 234 | 339 | 106 | 8.3E-31 | ||
| ProSiteProfiles | 254 | 288 | 35 | 12.978 | ||
| TIGRFAM | 256 | 290 | 35 | 1.1E-8 | ||
| Pfam | 288 | 337 | 50 | 1.3E-13 | ||
| ProSiteProfiles | 289 | 323 | 35 | 12.595 | ||
| TIGRFAM | 291 | 325 | 35 | 3.1E-9 | ||
| ProSiteProfiles | 324 | 358 | 35 | 9.405 | ||
| TIGRFAM | 326 | 359 | 34 | 2.0E-6 | ||
| Gene3D | 340 | 459 | 120 | 4.0E-22 | ||
| ProSiteProfiles | 359 | 398 | 40 | 7.706 | ||
| PANTHER | 378 | 505 | 128 | 2.6E-91 | – | |
| Pfam | 378 | 396 | 19 | 0.042 | ||
| ProSiteProfiles | 399 | 433 | 35 | 9.251 | ||
| ProSiteProfiles | 434 | 468 | 35 | 8.55 | ||
| Pfam | 436 | 462 | 27 | 0.1 | ||
| ProSiteProfiles | 469 | 503 | 35 | 8.122 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0456700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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