Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0459100 |
| Transcript ID | LotjaGi1g1v0459100.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 4-hydroxybenzoate octaprenyltransferase; TAIR: AT4G23660.1 polyprenyltransferase 1; Swiss-Prot: sp|Q93YP7|COQ2_ARATH 4-hydroxybenzoate polyprenyltransferase, mitochondrial; TrEMBL-Plants: tr|M5WWI9|M5WWI9_PRUPE 4-hydroxybenzoate polyprenyltransferase, mitochondrial; Found in the gene: LotjaGi1g1v0459100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:96258445..96262542) extracted from Lotus japonicus Gifu genome v1.2.
CATAGGTTCCTCAAATCTTCTCTCATTTCTTCTATCTCCTCCAAATCTCCTTACCCCTCCATCTCCAATCCATTGATCTC CTCTAAACAATTTGTAGAACGAAAACCTGGTCTGAATCTTCTACTCAGTCCTTTCAAGCCACCCCACCGTCAAATTTCTA ATGTTGAATTTTGTAGAAGTGTTAGATCTCTCCCGAATATCCAGTTTATTGTGCACATCTCTACATCGCCTTCAAGTTTA GGAAACGGTTCAAAGGAAGATAAGAATCAAAGAAGTAATGTGAGTAGTGGAGTGGATATCTCTTGGATCGACTTGTACTT GCCTAGGCGGGTTCAGCCCTATGCTCGGCTTGCTCGGCTTGATAAGCCAATTGGAACATGGTTGCTTTTATGGCCTTGTA TGTGGTAAGATTTTTTGTTTACTTATATTGTATTATTATGTCTAAACACTCTTGATGACAACATGGAGAGCTTAATAGTT TTTATCATATAACTGGATTGCTAGTTCGAAATGTGTGTAACACCTTTAAAATTGGTAGTGAGTTGATGAAATTTCAAAGG CCACGCACGAAGTTCCGTCTTTTCATTTGTTTTGTAAATGTGCAACTTAATTTATTTTATATAGTTGTTATGCTTAGATT ATTCTTCTTTCTCTTTTGAGAAATTCTAAATTCCTACCATAGGTCAATTGCCTTAGCTGCACCCCCTGGTCACCTTCCTG ATTTTAAAATGTTGACTCTGTTTGGATGTGGAGCATTGCTTTTAAGAGGAGCTGGGTGTACTATAAATGATCTGCTTGAT CGGGATATTGATACAAAGGTCAGTACGGTTGTCTTTTCTTTCTCTTTTTTGTAAAGGATCACAGGCATCCTTCATAGAAA ACAAACCTGCTTGAGTCGACAATGACCACTACGGGCCTTTGTCAATCTGTAGCTGCCTTTTCTTTTTGTTGCAGTGTTTT TTTGGCAACAAAAGATGCCGAAATAGTAATGTGTGTTGTAAATTAGTATAAGAGATCATGATCTGAAGCTAATTTAATAG ATATTGATAGAAAAATGATCTGAAAGCTAAGTCATGCCAAGACTAGTGCTTTAAGATTTCATATGGTCTGTAAGTTCATC TTTATTTTCTTTAATTTAGATGGACAACTTGCTTATCATGTTGCTTGTATCCTGATTTTTTCCTGTCTTCTAGTAGGATT TTTTGTCTTCCTTTCTTTCTACTTAACATTAATATCATCCTATTATTGAACTTATATTGCGTTTTAAAAAATGCCTTTGC TAGATTGTGCATTTGAGGGTCTAAGTGACGGATAAGAGAGGACTAGATTCAGGTTGAATAAAACGGCCTAATAGATATAA TTTTCATACCGTAAAATATGCTAGAACAAGTAACTTATAGGCATGGTTATAGATGATGAAAGCCCTCTATTACATTAACT CAATATTTCCCATCCATTAGGATAACACCGGAGACATTGGTTGGTGTCTTATTTAATTTAATTTTATTGCTATACGGTAT AACCCTTGTGATATTTTTTTGACTGAAGCACTTTATGTTTATTGAGCATATGATTGAGGTTAATGTCACACTTCTTCCCT TGACTTTTTCAGAAATAATGCAGGTAGAACGTACAAAGTCAAGACCTGTGGCAAGTGGTCTTTTGACCCCATTTCAAGGA CTCTCTTTTCTTGGATTTCAATTGCTTTTGGGTCTTGGAATACTTTTGCAACTAAATAATTATAGGTTAGTAAATTTGAA TTGCCAAAATGGGTCTATGCGTATTATGTTGGGACGTAGACGATTGAATATGTAATATCTTGATTAGCTAAGAAGAAGAT ATCGCCTTTCTTGATCCATAATCTGTGGTGCATGTCCTTCATTATGGTAGTCTGATCCTGATCACAAAAGCTGGCAAATA CCATATTATTTTGATATTTAATAAGATTAAAGACTGTATAGAGTTTCTGAAACTAATTTACCTAGATTGTTCCCTTCAAG AGACCTTGAAAATATTAAATAATGGGAGGAAAGTAGGTTAAAATGATATGCACAGAATGTGAAAAATAATCTCTTTTGAA CTTCTGGCACGTAGAGCAGGTAACTGTTTCTTTATTACCAAGACTGTTTATTAAAGTAGCTTAGCAGTTGCGTCTCCTGC ATATTAGCCTCTACTGCATATTAGTGTTAGTCATTATCGAAATTGATTCAATTGCACAAGGAAGACATATCACTGGCTAT GTCCACTACCAAACCCTATCTAAGAAAGAAGATAAAGCGTTTCTATGAAGTATTTAATTATTTATCCTGCTAAACTGAAA ACATTGTTGTTTTCAGGACAAAGACTGATCCCTTTCTTCAAAAAAGAGTTTTGCTTCAAGTAACTTGCGATTGCTATGCA TCCCTATATTTTAGTGTGCATGTTGTCATTATCTCATTTGCAGGCATATTTAAATTGAGATGAAGTGTGAATGAATGAAT CTTGCTAAGATTTCTAATATTTTTTTGGCTTGCATACCACAGCCGTGTTTTGGGTGCTTCGTCCTTGTTTCTCGTCTTCT CCTATCCCCTCATGAAGAGGTTTACATTTTGGGTAATGATTTTCCTCATTTCTAATTTCTTCTGACTGGTTTTGTTTTTG TTATTACCTTTGATGCATAATCTCATTATGATTTTATATGGTGCTCTGATGCTATATTGGTTAGCCTCAAGCCTATCTAG GGTTGACCTTTAATTGGGGGGCTTTGTTAGGATGGGCAGCAATTAGAGGAAGTCTGGATCCATCTATCGTGCTGCCACTT TATGCCTCTGGAGTTTTTTGGACCCTTGTGTATGATACTATTTATGCACATCAGGTAAAAACAGCATTTCTTCTTGAAAG ATGTAAGCCCTGTGATTTTGCTCCTCTGTTCTGTCTTTTCATTGTTTCTTATTGGCTTAGTGTCTGGGATCTGGTAAGAA GAGGGCTTTACGGGGTTTTTGCTTCTTATTACTGCACTTCTTCATGTTGATGGGCTTAAAATGCTCTCCTTCAGATATGG GGGGTGTTGAAGTAATGATATGATTTGCATTTCAACCATGTTCAGACGATTATATTGTCTCTAACAGTTTAGGTGTTATG GAACAAAGAATACAATGACAAGACTGCTTGGTATTGTTCACATGAATAAAGCAGTGTAATCAAAATTCTTGTACTGTCTA ATGATGTTTTCTAACTTTGGCATGCAGGATAAAGAAGATGACCTGAAAGTGGGAGTTAAATCAACAGCTTTACGCTTTGG TGATTTGACAAAGCAATGGATTACTGGTTTTGGGTTTGCATGCCTTGGTAATCTTGCTCTCAGTGGTTTTAATGCTGAAC TAGGTATCTTTTTATAAATATCATCCTGTTCTCTTTTTTCATGACTATTTGGGTTACAATGATGGTTTTTTTTTGACCTC CTGATTCATATGACTGGAGCAGGTTGGCCATATTATGCATGTCTGGCAGCTGCATCCGGACACTTGGGCTGGCAAGTATG GACAGTTGACCTTTCATCGCGTGCTGATTGCAATAGGAAGTATGTTTGGCAGGATTTTGTGCATATGTTAATGATTTAAT TATCCAAAAGCCCATCTTCTGATAGGATCTCAAACATTACTTTATTGGCTTGAACATCAGCTGGAGTGTCATAATGTTTT TATTTTTCTAATGGCCATGCCATGAAAAAGCAAATTTGAGATTATCATAAACTTTTTCAAAATTCAATTTCAGTTTTTTA AAAACTTAATTTTATGACTTTGCTACTAAGACTTGATGGCATATTTAGTTTTATGTCCTCAGAGCTCAACATAGGAAACC CTCCAAAATGTAGTGTTTGCTCTATTTTTCTGTTAGTTACTTTTCAGGCGTTTTAATGTGGATTGCAATATGGTAAAAAG CTTCTGATGTATTGATTAGCTTAATTACAATATAAAGTTCATTTCAATTCTCTTAAAATTAAACATGATGACCTGATTTT TGTACCTTTTTTTCCCCCATCTCTTCAGATTTGTCTCAAATAAGTGGTTTGGAGCTATCATATTTGGTGGGATCCTTGCT GGGAGGCTTTCATCATAG
CDS sequence (LotjaGi1g1v0459100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGTCAATTGCCTTAGCTGCACCCCCTGGTCACCTTCCTGATTTTAAAATGTTGACTCTGTTTGGATGTGGAGCATT GCTTTTAAGAGGAGCTGGGTGTACTATAAATGATCTGCTTGATCGGGATATTGATACAAAGGTAGAACGTACAAAGTCAA GACCTGTGGCAAGTGGTCTTTTGACCCCATTTCAAGGACTCTCTTTTCTTGGATTTCAATTGCTTTTGGGTCTTGGAATA CTTTTGCAACTAAATAATTATAGCCGTGTTTTGGGTGCTTCGTCCTTGTTTCTCGTCTTCTCCTATCCCCTCATGAAGAG GTTTACATTTTGGCCTCAAGCCTATCTAGGGTTGACCTTTAATTGGGGGGCTTTGTTAGGATGGGCAGCAATTAGAGGAA GTCTGGATCCATCTATCGTGCTGCCACTTTATGCCTCTGGAGTTTTTTGGACCCTTGTGTATGATACTATTTATGCACAT CAGGATAAAGAAGATGACCTGAAAGTGGGAGTTAAATCAACAGCTTTACGCTTTGGTGATTTGACAAAGCAATGGATTAC TGGTTTTGGGTTTGCATGCCTTGGTAATCTTGCTCTCAGTGGTTTTAATGCTGAACTAGGTTGGCCATATTATGCATGTC TGGCAGCTGCATCCGGACACTTGGGCTGGCAAGTATGGACAGTTGACCTTTCATCGCGTGCTGATTGCAATAGGAAATTT GTCTCAAATAAGTGGTTTGGAGCTATCATATTTGGTGGGATCCTTGCTGGGAGGCTTTCATCATAG
Protein sequence (LotjaGi1g1v0459100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWSIALAAPPGHLPDFKMLTLFGCGALLLRGAGCTINDLLDRDIDTKVERTKSRPVASGLLTPFQGLSFLGFQLLLGLGI LLQLNNYSRVLGASSLFLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAIRGSLDPSIVLPLYASGVFWTLVYDTIYAH QDKEDDLKVGVKSTALRFGDLTKQWITGFGFACLGNLALSGFNAELGWPYYACLAAASGHLGWQVWTVDLSSRADCNRKF VSNKWFGAIIFGGILAGRLSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 260 | 260 | 2.0E-142 | ||
| Gene3D | 1 | 140 | 140 | 4.3E-42 | – | |
| Hamap | 1 | 259 | 259 | 23.63 | ||
| PANTHER | 1 | 260 | 260 | 2.0E-142 | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| CDD | 1 | 257 | 257 | 3.85557E-100 | – | |
| TIGRFAM | 1 | 257 | 257 | 1.2E-96 | ||
| Pfam | 5 | 240 | 236 | 4.4E-56 | ||
| TMHMM | 18 | 40 | 23 | - | – | |
| Phobius | 20 | 40 | 21 | - | – | |
| ProSitePatterns | 37 | 59 | 23 | - | ||
| Phobius | 41 | 59 | 19 | - | – | |
| TMHMM | 60 | 82 | 23 | - | – | |
| Phobius | 60 | 81 | 22 | - | – | |
| Phobius | 82 | 86 | 5 | - | – | |
| Phobius | 87 | 105 | 19 | - | – | |
| Phobius | 106 | 113 | 8 | - | – | |
| TMHMM | 109 | 131 | 23 | - | – | |
| Phobius | 114 | 131 | 18 | - | – | |
| Phobius | 132 | 142 | 11 | - | – | |
| TMHMM | 138 | 160 | 23 | - | – | |
| Gene3D | 141 | 260 | 120 | 2.0E-12 | – | |
| Phobius | 143 | 160 | 18 | - | – | |
| Phobius | 161 | 180 | 20 | - | – | |
| Phobius | 181 | 202 | 22 | - | – | |
| Phobius | 203 | 207 | 5 | - | – | |
| TMHMM | 206 | 228 | 23 | - | – | |
| Phobius | 208 | 228 | 21 | - | – | |
| Phobius | 229 | 239 | 11 | - | – | |
| TMHMM | 240 | 259 | 20 | - | – | |
| Phobius | 240 | 259 | 20 | - | – | |
| Phobius | 260 | 261 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Prenyltransferase activity | Catalysis of the transfer of a prenyl group from one compound (donor) to another (acceptor). | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transferase activity, transferring alkyl or aryl (other than methyl) groups | Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor). |
Expression pattern of LotjaGi1g1v0459100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…