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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0459600 |
| Transcript ID | LotjaGi1g1v0459600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT1G56690.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690, mitochondrial; TrEMBL-Plants: tr|I1L6X3|I1L6X3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0459600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:96306619..96310593) extracted from Lotus japonicus Gifu genome v1.2.
GACTTATTTAACCTTTTTTATTTACCAAGTATTTGTGATTTTAAGGTGGAAACACCCGCGTTGCATCTTTCACCTCCATA GTTTCACATACACATGGGTTATGGCTACTCAACACTGCGTGTTTGCATGGTGCAAGTGAGGTTCCAATGCACCAGCACCG GAGCAATTTCACGTTACGCACGTATCGGTCAAATCGAGAATGCTCGTAAGGTGTTCGACGAAACGCCTCACATACACAGA ACCACCTCTTCATGGAACGCCATGGTTGCCGCGTACTTTCAAGCCCACCAGCCCCATCAGGCCGTTACTCTCTTCGAGAC AACGCCCGAGAAGAACATCGTCTCATGGAACGGCATGGTTTCCGGGTTTGTGAAGAACGGGATGGTTGCCGAAGCGCGGA GGGTGTTCGATGCAATGCCTGTACGTAATGTTGTTTCGTGGACTTCGATGGTTCGCGGTTACGTGCAGGAGGGGAATGTG GAGGAGGCGGAACGGCTCTTCTGGCGGATGCCGGAGAAGAATGTGGTGTCGTGGACTGTGATGCTTGGTGGGTTGTTGAA GGATTCGCGAGTTGAGGATGCGCGCAAGCTGTTTGATATGATGCCTGTGAAGGATGTTGTGGCCGTGACGAATATGATTG GAGGGTATTGTGAGGAGGGTCGTTTGGAGGAAGCGCGTGCTCTGTTTGATGAGATGCCGAAGAGAAATGTGGTTACTTGG ACTACTATGGTATCTGGGTATGCGCGGAATAGGAGGGTGGATGTGGCAAGGAAGCTTTTTGAAGTGATGCCGGAGAGAAA TGAGGTTTCTTGGACTGCTATGCTTATGGGGTATACTCACAGTGGGAGGATGAGGGAGGCTTCAGAGTTTTTCGATGCAA TGCCGGTGAAGCCCGTTGTTGCTTGTAATGAGATGATTATGGGTTTTGGATTTGATGGAGACGTGGATAGAGCTAAGGCG GTGTTTGAGAAAATGAGGGAGAGGGATGATGGAACTTGGAGCGCCATGATTAAGGTGTACGAAAGAAAAGGGTTTGAGTT GGAAGCCCTTGGTTTGTTTGCTCGGATGCAAAGAGAAGGGGCTGCACTAAATTTCCCTTCCTTGATCAGTGTTCTTTCTG TGTGTGCCAGTTTAGCCAGTCTTGATCATGGAAGGCAGGTTCATGCCCGGTTAGTGAGATCTGAATTTGATCAAGATTTA TATGTTGCCTCGGCCTTGATTACAATGTATGTTAAGTGCGGTGATCTTGTAAGAGCAAAATGGATTTTTAATAGGTATCC TTTAAAGGATGTTGTTATGTGGAATTCTATGATTACGGGGTATTCCCAACATGGTTTGGGAGAGGAAGCTTTAAATGTTT TCCGTGATATGTGCTTATCTGGGGTTCCACCCGATGATATTTCCTTCATTGGAGTTCTTTCAGCCTGTAGCTACAGTGGC AAGGTCAAAGAAGGGCGTGAAATATTCGAATCTATGAAATGCAAATATCAAGTGGAGCCAGGAATTGAACACTATGCGTG CATGGTTGATTTGCTTGGACGAGCTGGCCAGGTGAATGATGCAGTGGAAATAGTAGAAAAGATGCCAATGGAACCAGATG CTATTGTTTGGGGTTCATTGTTAGGTGCCTGCAGAACCCATATGAAGCTGGATTTGGCTGAAGTTGCAGTTGAGAAACTT GCACAGCTAGAGCCCAAGAATGCTGGGCCTTATGTCTTGCTCTCACATATGTATGCATCCAAAGGAAGATGGGAGGATGT TGAAGTCGTTAGGGAAAAAATAAAAACTAGGAGTGTTATCAAATTGCCAGGGTACAGTTGGATTGAGGTGGAGAAGAAGG CACATATGTTCGTTGGGGGAGACAATAATTGCCACCCCGAGCAGCCTATTATTATGAAAATGTTGGAGAGGTTAGATGGA TTGTTAAGGGATGCTGGGTACAGTCCTGATCATAGTTTTGTGCTTCATGACGTGGAGGAGGAAGAGAAGACACATAGCTT GGGTTATCATAGTGAAAAACTTGCTATAGCATATGGACTCCTAAAAGTGCCTGAAGGGATGCCAATTAGAGTTATGAAAA ATTTGCGGGTTTGTGGTGATTGTCATTCTGCAATCAAATTGATTGCAAAAGTTACTGGAAGGGAGATCATTGTGAGGGAT GCCAATAGATTTCATCATTTTAAAGATGGTTATTGTTCTTGTAAGGACTATTGGTAATTCCTTGAAACAATCACGTATGG CCACAGATTTGAAAAAACTATTGGCAATTCGGAATAGAGGGTTGCTTATCCATTCCCTGAGCATGATGGGCTGGGATACC TGTAATTTGACAGGCTTTATGGAAGAATCAAACTGAAGTCCTTAATACATTTGACTTTCACATACAAGTTACACAATTGT AAGTTGTAATATATATGAGAGTATTACTTTACTACCGTCAGTGACATTCTTCTAACAGCATCTTACTTTTTTTCAGCCTT AAACATTTGCATAAAAATAGATGGATTAAAAGCATTCACTTCAAAGGAACTGGCACTTGATACCAAGTACTGACAATTTT AGTTGCTCAACTCAACTAAAGCTATCCAAGGAGGTTAGGGAAAGGTTTGTATGGGTATGCAGTGACCCAGATACCAGCTG TGTTTCTGAAGCTTTTGATCAGGATGCACCGATGCAACCTATATCTCATGGTATGTACATCAGTTGCACCATGATACTCT TTTTTTTTACGGAAACAAGATGATTCATTGAAAAAGATCAGCAAAATATCTGACCAAATACAAGAATTGAAACAAATAGG AATATTATCAAACCAGACCTCATCCACATGTGATTCTGAGTACTTTGCTAAACTATGAGCTACCTTATTTGCATCCCATG ACTAAAAGAGATAGAAGTAAAAGCTGGGATCATGTTCCTAATGTCATGAGGAAATCATACTTTGATGTAAGATTAGTAAC AAGTTCGACATTTTCAGTTATTTTTCAGAAGGGGGAAACTGTTCCAGCCACACCCTTGACTATTTACACCATACCATTTC CTAAATACCCTCTGCTTGTTTCTTTCCGCAAATCCAAAAGTTACTTCGAGTAGGTTTTAACAAAAATATGCAATTATGAA GTTTTTTACAAAACTGACAATTATGAGACTAATCCACGAGTCTTTATGATTATGTTTCCCAACAAATACTGAATCGTAGT CTAGATGCTTAAGGAACTTAGCTTTCTACCGGTTGTGTTACACGTTAGTCTACCATTAAGGTTTAGTTTAATTATTTATT TTAGTTCAAATAGTAAAAATTATACAGTATAATGCATTACATTTTTAATAAAATGATGTGATCTACATGAAAATTTTCAA TTCAAGATATTCTATGGGTATACTAATACGAGCTGCCGAGGCCGGCAGAAACTGGCAGAAATAAAACTCAAATATGTAAG TGCATGTCTATTCACATAACAACCCACCATTTTTTTCCCAAAAAAAAAAGAGGTTCTCTGCCATAGGCTATTGAGCCCGT GGTTCACTTTGGAATTAGATTATTAAAGTTGTTATTGACTCGGTTTATCACATGTTCATCTAATAAGTTTCAATAATAGA TTGTAGTTTTCCTTTCAAAATAATAAATTGTAATTTTCATGCACAATTCCTTCACATTATTGACATTCATTTATCTTATG CTAGCATACATGCTCAACTGCCCGAGGAGTGCTAATGAAGCTGCTAATTGTCTTGCCGGTTTGGGAACGGATCAAATAAT GTGCCTTCATTCGTTGGGAGTCGCCTTCTCCTCATTTTATTTTCATCTTGCTAATCTTAGCTTTTTTGTTTTTTCTTGTA ATTTTTCCGATGTACTAAAATAAAAGCTTACGTGCTCACAAATAATTAAATAAATTTTAATTTTTATATATATATTTAAA ATTTATTTTCTGACATGGTACACAACTATTAAATGAATATGTAAGAGAGCTTCAC
CDS sequence (LotjaGi1g1v0459600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTATGGCTACTCAACACTGCGTGTTTGCATGGTGCAAGTGAGGTTCCAATGCACCAGCACCGGAGCAATTTCACG TTACGCACGTATCGGTCAAATCGAGAATGCTCGTAAGGTGTTCGACGAAACGCCTCACATACACAGAACCACCTCTTCAT GGAACGCCATGGTTGCCGCGTACTTTCAAGCCCACCAGCCCCATCAGGCCGTTACTCTCTTCGAGACAACGCCCGAGAAG AACATCGTCTCATGGAACGGCATGGTTTCCGGGTTTGTGAAGAACGGGATGGTTGCCGAAGCGCGGAGGGTGTTCGATGC AATGCCTGTACGTAATGTTGTTTCGTGGACTTCGATGGTTCGCGGTTACGTGCAGGAGGGGAATGTGGAGGAGGCGGAAC GGCTCTTCTGGCGGATGCCGGAGAAGAATGTGGTGTCGTGGACTGTGATGCTTGGTGGGTTGTTGAAGGATTCGCGAGTT GAGGATGCGCGCAAGCTGTTTGATATGATGCCTGTGAAGGATGTTGTGGCCGTGACGAATATGATTGGAGGGTATTGTGA GGAGGGTCGTTTGGAGGAAGCGCGTGCTCTGTTTGATGAGATGCCGAAGAGAAATGTGGTTACTTGGACTACTATGGTAT CTGGGTATGCGCGGAATAGGAGGGTGGATGTGGCAAGGAAGCTTTTTGAAGTGATGCCGGAGAGAAATGAGGTTTCTTGG ACTGCTATGCTTATGGGGTATACTCACAGTGGGAGGATGAGGGAGGCTTCAGAGTTTTTCGATGCAATGCCGGTGAAGCC CGTTGTTGCTTGTAATGAGATGATTATGGGTTTTGGATTTGATGGAGACGTGGATAGAGCTAAGGCGGTGTTTGAGAAAA TGAGGGAGAGGGATGATGGAACTTGGAGCGCCATGATTAAGGTGTACGAAAGAAAAGGGTTTGAGTTGGAAGCCCTTGGT TTGTTTGCTCGGATGCAAAGAGAAGGGGCTGCACTAAATTTCCCTTCCTTGATCAGTGTTCTTTCTGTGTGTGCCAGTTT AGCCAGTCTTGATCATGGAAGGCAGGTTCATGCCCGGTTAGTGAGATCTGAATTTGATCAAGATTTATATGTTGCCTCGG CCTTGATTACAATGTATGTTAAGTGCGGTGATCTTGTAAGAGCAAAATGGATTTTTAATAGGTATCCTTTAAAGGATGTT GTTATGTGGAATTCTATGATTACGGGGTATTCCCAACATGGTTTGGGAGAGGAAGCTTTAAATGTTTTCCGTGATATGTG CTTATCTGGGGTTCCACCCGATGATATTTCCTTCATTGGAGTTCTTTCAGCCTGTAGCTACAGTGGCAAGGTCAAAGAAG GGCGTGAAATATTCGAATCTATGAAATGCAAATATCAAGTGGAGCCAGGAATTGAACACTATGCGTGCATGGTTGATTTG CTTGGACGAGCTGGCCAGGTGAATGATGCAGTGGAAATAGTAGAAAAGATGCCAATGGAACCAGATGCTATTGTTTGGGG TTCATTGTTAGGTGCCTGCAGAACCCATATGAAGCTGGATTTGGCTGAAGTTGCAGTTGAGAAACTTGCACAGCTAGAGC CCAAGAATGCTGGGCCTTATGTCTTGCTCTCACATATGTATGCATCCAAAGGAAGATGGGAGGATGTTGAAGTCGTTAGG GAAAAAATAAAAACTAGGAGTGTTATCAAATTGCCAGGGTACAGTTGGATTGAGGTGGAGAAGAAGGCACATATGTTCGT TGGGGGAGACAATAATTGCCACCCCGAGCAGCCTATTATTATGAAAATGTTGGAGAGGTTAGATGGATTGTTAAGGGATG CTGGGTACAGTCCTGATCATAGTTTTGTGCTTCATGACGTGGAGGAGGAAGAGAAGACACATAGCTTGGGTTATCATAGT GAAAAACTTGCTATAGCATATGGACTCCTAAAAGTGCCTGAAGGGATGCCAATTAGAGTTATGAAAAATTTGCGGGTTTG TGGTGATTGTCATTCTGCAATCAAATTGATTGCAAAAGTTACTGGAAGGGAGATCATTGTGAGGGATGCCAATAGATTTC ATCATTTTAAAGATGGTTATTGTTCTTGTAAGGACTATTGGTAA
Protein sequence (LotjaGi1g1v0459600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGYGYSTLRVCMVQVRFQCTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEK NIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRV EDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSW TAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALG LFARMQREGAALNFPSLISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDV VMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDL LGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVR EKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHS EKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 15 | 124 | 110 | 2.8E-21 | ||
| PANTHER | 20 | 108 | 89 | 7.4E-115 | – | |
| SUPERFAMILY | 23 | 311 | 289 | 4.36E-5 | ||
| SUPERFAMILY | 29 | 556 | 528 | 1.77E-5 | ||
| ProSiteProfiles | 50 | 80 | 31 | 7.399 | ||
| Pfam | 53 | 76 | 24 | 0.1 | ||
| ProSiteProfiles | 81 | 111 | 31 | 9.898 | ||
| Pfam | 83 | 112 | 30 | 4.9E-6 | ||
| TIGRFAM | 83 | 113 | 31 | 3.1E-6 | ||
| PANTHER | 86 | 170 | 85 | 7.4E-115 | – | |
| ProSiteProfiles | 112 | 146 | 35 | 12.2 | ||
| TIGRFAM | 114 | 145 | 32 | 6.1E-6 | ||
| Pfam | 114 | 144 | 31 | 1.7E-8 | ||
| Gene3D | 143 | 265 | 123 | 2.0E-31 | ||
| TIGRFAM | 145 | 175 | 31 | 5.4E-5 | ||
| ProSiteProfiles | 147 | 173 | 27 | 5.536 | ||
| Pfam | 173 | 206 | 34 | 2.3E-8 | ||
| ProSiteProfiles | 174 | 208 | 35 | 11.762 | ||
| TIGRFAM | 179 | 206 | 28 | 1.0E-6 | ||
| PANTHER | 180 | 288 | 109 | 7.4E-115 | – | |
| TIGRFAM | 207 | 236 | 30 | 1.0E-6 | ||
| Pfam | 207 | 236 | 30 | 6.5E-7 | ||
| ProSiteProfiles | 209 | 235 | 27 | 7.081 | ||
| ProSiteProfiles | 236 | 270 | 35 | 9.788 | ||
| Pfam | 238 | 264 | 27 | 1.7E-5 | ||
| Gene3D | 266 | 331 | 66 | 8.5E-6 | ||
| Pfam | 269 | 297 | 29 | 7.4E-4 | ||
| ProSiteProfiles | 271 | 297 | 27 | 5.744 | ||
| PANTHER | 288 | 563 | 276 | 7.4E-115 | – | |
| ProSiteProfiles | 298 | 332 | 35 | 9.493 | ||
| Pfam | 301 | 329 | 29 | 4.9E-5 | ||
| ProSiteProfiles | 333 | 367 | 35 | 5.207 | ||
| Gene3D | 335 | 465 | 131 | 1.0E-27 | ||
| SUPERFAMILY | 361 | 555 | 195 | 6.78E-5 | ||
| ProSiteProfiles | 368 | 398 | 31 | 6.215 | ||
| Pfam | 373 | 394 | 22 | 0.48 | ||
| Pfam | 398 | 445 | 48 | 1.2E-11 | ||
| ProSiteProfiles | 399 | 433 | 35 | 12.814 | ||
| TIGRFAM | 401 | 434 | 34 | 2.3E-8 | ||
| ProSiteProfiles | 434 | 464 | 31 | 7.684 | ||
| Gene3D | 466 | 599 | 134 | 5.5E-13 | ||
| ProSiteProfiles | 470 | 500 | 31 | 7.454 | ||
| Pfam | 474 | 498 | 25 | 0.09 | ||
| ProSiteProfiles | 502 | 532 | 31 | 5.064 | ||
| ProSiteProfiles | 536 | 570 | 35 | 6.697 | ||
| Pfam | 572 | 697 | 126 | 9.9E-39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0459600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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