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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0459900 |
| Transcript ID | LotjaGi1g1v0459900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | KH domain-containing family protein; TAIR: AT2G38610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610; TrEMBL-Plants: tr|I1N3C0|I1N3C0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0459900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:96345117..96351847) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTCTTATTAATTTTTTATTAGACAGCATCTGCCATCTGGAGAAGGAAAATATATTTAAGAAAAAGCAAATAAAATTG TGGAAAATAAATAAATAATTATTTGTTGTCTTCCTTTTCTGTAAAATAAATAAAATTCATTGAGAACTCTGTCCACCCTT TTTGGTTTTTCTCCTTATTACAGAGCCCCTTTATTGATGGTGGTCTGTTTCTCCTTTTTCTTCTGCAAGCACTGCACCAA CTAAGCCTTCTTTTTCAACTTTTTTGAGGTTGGTTTTTCTTCCAATCCTTAAGGAAAGCTAAAGAAAAAGGTAGAGCCAT GTCAGGCTTGTATAATCCCAACTATTCACCTGCTAGAGCAGCTTCTCCTCAGATTAGGAGCACCCCAGAAGACAGGTGAC ACTTTTTCTGCTGTTTGGATATCAAAATTGAACTAAAGATTCAAACTTGGACTGTTCCAGAAACACCCTTTTGGATTTAG CTTTGGGTGTGATTGTGATTGTGTTTGATTTTGCTTTGAATGAATTTTGAAACTTTTTGATTGATAAAGAAAAGGGTGGT TTTTGTTTTGCAGTCAGTACCTACAAGAGTTGCTGGCAGAGCATCAAAAGCTTGGACCCTTTACACAAGTGCTTCCCATA TGCAACCGCCTGATAAATCAAGGTCTCTTTTGTTTGTGGATCTATCTTTTCTTTTTTCCCCAATTTGTGTTTTCCATGGA AGCTTGTTTTGATGTTAGTGTCTGGATCGTGTAACAAAGTTTATATCTGTATGAACAGCTTAAATGTTGTTGATCATGTC ATGCATCATTGTGGTGGCACACTCTTCCCTTCTCACTTCACTCATTACTGATTTTTTTGATATGGGGAATGCAGAGTTGT AAATTAAATAAAATTAACAGCATCCCCTATTTGATTTTGTCTGAACATTGGATGAAATGTATCTTCATAATGTTAACTTA AGTCATATTTGTATACACGGTGGAAAACTACGGTAGACATCCCCAAAAACTAAAGGAAATTGCTTCTGTCCACCGTAATT TTGGCTGGCAATGTATTCCTGCTGAATTGCTTGCTCATAGTTTAGCTTGCACATTAAGGTCAAGTGAGTGCTTTTCAATT AACATTTCGAATGCTGGTACCATTAACATTAGTACCATTGACTGCAGTTGACCTTCTTCCTTACAGAAAAATCAGGGCTT GTTAATTCGCTCTCTTTTATGAATGATTGAAAAGCTAGGTCTAATGGTCTATATTGTAGTGTCTGACATTTTAGGACTTT GTCTAACATAGTTCATTATCAAATGATGTTTACATCTAATTACGTGAATATATATATTTTCTGACTTTATTCATCACTTA ATATCTCTTGAATGCTCCATTTTGTTAGTGAGTTCCTTCTCTATTCATGTCCTGTGGTTTTTAACAGTAGGCTTTGATTT CTCATTACAATGTTTCACTATGTGCAGAAATATTAAGAGTTTCTAGAATGTTGTCCAACCAAGGTTTTGGTGACTTTGAT AGACTGCGGCATAGAAGCCCTAGTCCTATGGCTTCTTCAAACATCATGTCAAATGTCAGTGGGACAGGTTTGGGTGGATG GAATAGTCTTCAGCAGGAGGTGATTACTTTGAAATTGTTAACTGTTGCATCTGAATTTTATATCTTCAAATTATCATTGT ATTGTTTGAGTAAATTGTTAGTTTCAAAAAACAATAGAGTATACTGTTTGTGTAAGATACTAAGATGCTCTTTGGTGCAT TCTCTTTCAAACCATAAGATGAGGTTTAACTGTTTAAAAAACCAAAGGGGTTGGTTGAGTGAAGTAAGATAAGGTCTCGC ACCATCTCTCACCATTGAGAAAACAATCCTTCTCTCTTCACCATCTTCATTTTCCTTCAAGACAACCAACTTCATTGCCC TCCTTCCTTTCCGAAGAACAATCCACGATTCATCTGCATTCCCTTCTTTTCTTTTCACCCTCTCCACCTTTGAACCCACC ATCTCCATCACCATTTCTTCTTGCAAAAACCTCACTCCACTGCCACCCCCAAACCTTCAAAGTGGACCAACCTGTTGCAT CACAAACCGCAGAACACTTCATAAGTCATTAGTGCCCTTTTCATTTTTTAATTTGTTTCTCAATCCAGTGCGCTCATCAT ACTATACCTTGCTTTGCTCATTTCGTTTGCCATCTTTTTCATGTTGAACATAGAAAAATAAATTGTAACTTTCTAGAAGA TTGAGATTGTGGTGTCTAATTGATAGCATGTATTTTCAAATTTGGTCATTCCTTGCTGTTACCTTTTTGTTGAATTTCCG TGATGATATGCTGTTTATCTACTTCTCATTTAAAAGTTGATGACATGTAGCAGCTTCCTAAGAATCACTTTTGTTACCAT ACCAATTGGTTACTTGTTTTACCATTGTAGCCTTTTCGACGGAGTAGCTAATCTAGTGGGTGGTTTTTCTTTCATATGAA CTAGGGAGACCAAAATCTCACTAGCACGAAATTAGGTGACCAAATGTACAATTAAGCCTAACGTATTTATTATAGTGGCA ACCATGCCATCTATTTCCATTTGTTAATTGGATGAGAAGCTAATAACAGGACCACATTTGTTCAATTAAAAAAATAAGAT AGGAAGCAACAAAAAATAGGGTCCACCAAAACGAGGCCAAAGAAATTAATCAAATATCCAGTAAAGTTACTTCTTTGAAG TAGCCATTAGCCGAGCACCACAAAGAAGTTAAGAAAACCATCATATCCTTTAAATGATGCCAATGCAATTAAGCAAGTAA CTGGCCATGAAAATTTAGCATTCCTCCCGGGTCGCATGTAGGCACCAAATAGCATCAAACCCAGCACATCACTAAAGGCC CTTGCTCTGCTCAAATCTTCCAAACCTCTAAAATGTCAAAAGAGCAAATCCTCCAATCTCCTATACAAACCTAAGATTCA CCAAAAATAATTTAAAGCTTACACCACAAATTTGCCTCAGCTAAACCCAGCGTAAACAAAAGCCTTATTCTCTCAGAGCG AGAGTAACACATAGCTTCTTGAACATTAGGAGATATAGCGCTCTGTGGGGCTTGCAGTCCTGCAACTAATCATAAGTATT AAACCTATTATGCACAGCAATCAAGATGAAGGACTTCACTTTCAAAAAGGACATAGATTTCCAGAGGGATAGCAAGAAGA AAACTATGTTTAGAGACGGAGTGAGTAATCAGAAGTTTTACTTGTGAAGAAAAATCCTATAGAAGAATTGAGACATCCAA TTTCAATGTGATCCACATCCACATCAAAGATCTGTCTTATGTATCATGATTAGCTTAATTTTCTACATTTCATGCATTGA TATTCTATGGTTGTCATGTCACTCACAGATGTACCTACTCCATCCCTTGGTGATGGTATTTTGTCATTAATAATATCTTC TTGTCCTGTGTTTACATGTGTATTTATATAAATATCAGTAATTTTTGTATGTTCTCTTTTGTGTAATGTAAATTAGAAAG TATTATGTGATTATGTCATGGTATGCTGGGAGTGCATTTATTTTTGTATTTTTTTACGATGATGCACTACACTAGACTAG TTTTTAGTTTTTTTTTTCAATATGATTCAAGCAAACTATGGGATTGAGTCTTTTCTCCTAACAATAATTTTGTTCTGCTA ACAATTTCATGGGCTCAATGAGGGCTTTCCATGTATGAATAACAAACACCAGGAGCAAGATAAAATCTGAGTACTCTTTG TCGTATTATCCGTGAGAAGTAGATTAGTAAACTATATAACTTGCAGAAGTGTTCAACATTTTCCTCTTGCAGTACCTCTG CATCTTGATCTGTTTTCCTCTCTCATTCATGTCAAATTTTTAAATTTCCTCATTGGTTGATTGATTCCCTGGATTGAGAA TGCTGGTTACTTGTTGATTTTCATTTTATAATGAAACGCTTATTATTTGTTCTTGTTGTTTACCATTATTTTTAACTTGT ATGTATTAAAATTACCTTTTTATATAAAAAAGCAGAGATTTAGTGGACCCCCTGGAATGACAATGGACTGGCAAGGTGCC CCTGCAAGCCCTAGTTCATTTACTGTTAAGAGAATCTTGCGCCTGGAAATTCCAGTAGATACATACCCTAATGTAAGTTT TATACAAATGCTAGTTATACAAGATTAAATTTGATTACTGAATCCGCCACCTGTTTTCTTCTTTTCCGGAGCAAAATGTT AACTAATACAAATGCTAGTTAAGTTAGTTAGTTTTACCATTTCTGTTAGTTAGTTACTGCTAAGTGCTAACTAACTCACT AATAGAAATGGTGAAACTAACTAACTGAACTAGCATTTGCATTAGTTAACACTGAAAGCTCTATCAACTACAAGTTAATA AAAACATTTTGCTCCTTATTGCATTAGTTCAATTTTGTTGGAAGACTTCTGGGACCTAGAGGCAATTCTTTGAAACGGGT AGAAGCTACTACTGGTTGCCGTGTATATATTAGAGGAAAAGGATCCATAAAGGATCCTGACAAGGTAATGAAGATAAACA CAATATTCCATGTCTTACATTGCAAAATGCCTAAATAGTATGATGACCTTCATGATTAATCATTACTTGTATCAACTGAG ATTATTTTAATTTTTCAATCTTAAGGAAGAGAAATTACGAGGAAGACCAGGCTATGAGCATCTCAATGAACCTCTACACA TTTTGATTGAGGCTGATTTACCTGCTAATGTTGTGGATGTAAGGCTCAGGCAGGCTCAGGAAATTATAGAAGAACTGCTC AAGCCCGTGGTATGTTCATTTCACCATATATCTTTCTCTGTTATGCAGGGTGAACTAGCTGCTTTTCTACTTTAATTTGT CTAAAAGAGAACATAACGACTTCTGTTTAGTGTCTAAACTTGTAATTGGGCTGTTAGTTTTCATGCACATTCCGCCATTT ACTTTAAAGTGATAAACTGCTTTTTTCATGGTTTATTTTAGTGCATATATTTATTTTACATTGACACGTAACATTTATTA TGGGACATTTATAATTTCTCATAACAAAAAAGCTTAGTTACAAACCCTTCCCTCGTCCATATCAGAATATACTTTTCCCT CCATAAATATGTCAGGAAAGAGTTCTGCAAAGCAGTAGCAGCTTATAAGAGAGGAAGAAAGAAGTATTTGGGGATACTTG AAAGAAAGTTTTAAAGAAAAAATCAAGATATTGTATTTTATATATTTAAGATGTATTTAGACTAAATAATTTAGTCAAGT TAAGGTGTATCACTGTTGTATTCCAAACAATCAAACACTCACTATTAAAAAAAAAGAAGTGAAAAGAGGATAGTCCCTTC ATTTGTATTTAGTTGTATCGTATGCGTACCAGTGTCATGTACTAGACCAGTACTTTGCAGATTTTGGAGCATTTCAGCTT CAAAGCAACTAATCATTAAATTTCCACTTGCACTTTGTAGGAGTCAAATCCATGTTGGTTGACATATAAGCATTCTGTTG GAAACCTGATTATTTACATTTTTCTTTTCCTTGTTTCCCAAAATATTCTGTTGAAATCACTCTAAAGGACACGTTACTCT CCTCGCCTGTTGAACAAAATCTTTAAAAATAGTGAAAATTAATCATTTCACCATTTCTGAGTTTGTAGATCAATATCTTT CTGTGACACCAATTTTGTTAATGGAAGTCAAGAACAGCACACTTTTCCATAGGCTGAATAACCAGTTTACTGATTCATCT CTGGTGAAATTTTAATTACTTTGTCTTGGATTTCAATATGCAGGATGAGTCACAGGACTTTATCAAGAGGCAGCAGCTGC GCGAATTAGCTATGCTGAATTCAAATTTCAGAGAAGAGTCACCAGGGCCAAGTGGCAGTGTGTCCCCATTCAATTCTAGT GGAATGAAGCGTGCAAAACCGGGTCGCTAAACAATGTTACCTTGATGATGGTGTAGATGGACATTGTGGTCCTCCTCCAG CTATTCATTGCTGAGAATATCTTCCAGTACATGTCTCATTCAATGCAAAGCTATAAAAGCATAGGCTAACAATTCTTGCT GGTTAGCATTCTGGTGGTTTTTACCTATCCCTTTTGTCCCCACCCTGAACAGAAAGGAGACAAAGCTGGAATGAAGAACT TTTAAAAAAAGAGAAATTTTATATAGTTGGGTATTGAAAATAGTTTTGTTCAAATCAACCCCTTTTTTTTTTCCTTGTTA CATTCATTGGATTTATTCTTGCTTGAGAAGCTTGGAATATATACATGTGATGATGGTGGTGGTGGTGGTGAAGTTTTAGG AGGTCTAAGACAATGAAGTGTTGTTGGCATGTGTCATGTGTCAAGTTTCATGGTATTTTAATATTTTATAAGTTAGCATA GGTTGGATTCTTTTTTTAGTTGCTTTGTCACAAGCATTTGTATTCTCTTTTGAGAGGTATGCACTGTAGTTGGAATGATG CAAGTCCTATAAACATCTTACCATGTACCATTAAAGAAAAAAAAATGTGGTATTGTTTATATAGATGGTACATATGAATG ATCTGCAGATTATTTTTTATTTCAGTCATATTTGGGCATGTAATATCAATTATTAACTTCTTTTATCAATGGTTGAGATT TCATATTTTTTTTATCCAAAGTGAGCTTTCACTTAAAGAGTCAAATCGGAAATGTTACATGACTGTCCTAATTTGATTTG AAATTTTAACA
CDS sequence (LotjaGi1g1v0459900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGGCTTGTATAATCCCAACTATTCACCTGCTAGAGCAGCTTCTCCTCAGATTAGGAGCACCCCAGAAGACAGTCA GTACCTACAAGAGTTGCTGGCAGAGCATCAAAAGCTTGGACCCTTTACACAAGTGCTTCCCATATGCAACCGCCTGATAA ATCAAGAAATATTAAGAGTTTCTAGAATGTTGTCCAACCAAGGTTTTGGTGACTTTGATAGACTGCGGCATAGAAGCCCT AGTCCTATGGCTTCTTCAAACATCATGTCAAATGTCAGTGGGACAGGTTTGGGTGGATGGAATAGTCTTCAGCAGGAGAG ATTTAGTGGACCCCCTGGAATGACAATGGACTGGCAAGGTGCCCCTGCAAGCCCTAGTTCATTTACTGTTAAGAGAATCT TGCGCCTGGAAATTCCAGTAGATACATACCCTAATTTCAATTTTGTTGGAAGACTTCTGGGACCTAGAGGCAATTCTTTG AAACGGGTAGAAGCTACTACTGGTTGCCGTGTATATATTAGAGGAAAAGGATCCATAAAGGATCCTGACAAGGAAGAGAA ATTACGAGGAAGACCAGGCTATGAGCATCTCAATGAACCTCTACACATTTTGATTGAGGCTGATTTACCTGCTAATGTTG TGGATGTAAGGCTCAGGCAGGCTCAGGAAATTATAGAAGAACTGCTCAAGCCCGTGGATGAGTCACAGGACTTTATCAAG AGGCAGCAGCTGCGCGAATTAGCTATGCTGAATTCAAATTTCAGAGAAGAGTCACCAGGGCCAAGTGGCAGTGTGTCCCC ATTCAATTCTAGTGGAATGAAGCGTGCAAAACCGGGTCGCTAA
Protein sequence (LotjaGi1g1v0459900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGLYNPNYSPARAASPQIRSTPEDSQYLQELLAEHQKLGPFTQVLPICNRLINQEILRVSRMLSNQGFGDFDRLRHRSP SPMASSNIMSNVSGTGLGGWNSLQQERFSGPPGMTMDWQGAPASPSSFTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSL KRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDVRLRQAQEIIEELLKPVDESQDFIK RQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKPGR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 278 | 278 | 1.2E-178 | – | |
| MobiDBLite | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 278 | 278 | 1.2E-178 | – | |
| Pfam | 24 | 70 | 47 | 6.5E-13 | ||
| SMART | 130 | 230 | 101 | 2.8E-6 | ||
| CDD | 135 | 255 | 121 | 2.94355E-55 | – | |
| SUPERFAMILY | 137 | 255 | 119 | 2.76E-32 | ||
| Pfam | 142 | 183 | 42 | 1.9E-5 | ||
| ProSiteProfiles | 147 | 204 | 58 | 8.471 | – | |
| MobiDBLite | 253 | 280 | 28 | - | – | |
| MobiDBLite | 255 | 271 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi1g1v0459900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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