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LotjaGi1g1v0462800.1

Overview

Field Value
Gene ID LotjaGi1g1v0462800
Transcript ID LotjaGi1g1v0462800.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description AT hook motif DNA-binding family protein; TAIR: AT4G12080.1 AT-hook motif nuclear-localized protein 1; Swiss-Prot: sp|Q8VYJ2|AHL1_ARATH AT-hook motif nuclear-localized protein 1; TrEMBL-Plants: tr|A0A151TB87|A0A151TB87_CAJCA Putative DNA-binding protein ESCAROLA; Found in the gene: LotjaGi1g1v0462800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:96707903..96713104) extracted from Lotus japonicus Gifu genome v1.2.

TGATATATAAAAAATTAATTGTTCTCACGGACCTGAAATTGCTCTTAACTAAATTGTATTTATTGGGGTTAGCAATTATA TTCAAAATGCAATCTTCAATATTTACCTACTTTGTCACCTTTTTTTAGCCTTTGGTTTTTCCTCCTAGATTATAATAACT ATTATTATTTGAACAATGTTGCTGTTGTATTTATTTTGAGCTTTACCCTTTTTCCCATTAAAATTTTTTGAGCTTTGGAA AAACCAACCAGCCAACAGGTTTTTATTCAGCTCCTGAAATCTGTAAGTTTGTTTGAACTCTGGGAAACAGTTTCTTAACT TTTCTGCTCTTTTTTCTTCTGTTTTACGTTTTTTTAATTGTTTTTTCACTTTCTGGGTTGTGAGCTAGTTAAGTTCTGAA GGGAGCTGAAAGAAAATCTTAATACATAGTTGCAGGGACAGGCTACATAGTCTTGCTGATTTTTGCACTGTGAAGAGTAT CCAGAGTTTGATGTTGGTATGTGATAAAACAAGTGTAGTTTTGTGTTTGCTTTTATGTCTTTCTTTTTTTATGAGTTCAG TTTTCTGTCTTGTAAAAGTTCAAGCAAATGCTGGTTAAGAAGCAGATTTATGCAAAAGGGTGTTGTTTATTTGTTCCTGT TTTAGGAAAGACTTTGGTGTTTTTGGATGCTTTTGCCATGTTATGGTTTTTTAACCAAGTATTTTATGAGTGCTTGGTTC CAATTTGTTTTTTTCAGTCAAATCTTGAAAATTTTCTTAGCCACTTGGGTTTTTAAATTATAATATTGCAATTTTTTTTA CTAATTTTAATTATTTTTCTATTAATGGCTAATACTTTTTTCTTCCTCTGTTTAGGAGGTGAGTTTCTGGTTTCTGTACT TGAACATTTGAGAACTGAGGGAAGTACCCATTTTTTTTAGAGAGGGGGGAAAATCTTTGTTGGAAAATAACTTCTTTGTT GTGTTCTCTGCTCTGACTCTAGAATGCTGTGATTTTTTGCAACTTAATTAATGAAACAGATCTCTCTTAATTGAGCTAAA CAGCTCATTGTATACATAAAGTTTGTATCTTTTGTTTGTTTTCTTCCTCATGTCTGATAATCCTTTGATGGGTTTTCACT TGCTTCCTAAAATTCATAAGAGGACGGTTCAATTCACTTATGTGTTGCTAAAAGACTAAATTTTAGCAATGAGCCAATGA CACCTATTCTCATGACCCATTTGCTTTCTAAGTGTGTGTTTAGTTCCGAGTTTGAGAATCTGATAATCAATTCTGATAGA GTAAAATCAATTTTGGATGACAATATAGATGTTTGGGAGTTATTTTAGAAAATTGATTTCAGTTCAAAATCAATTTTTTT AGAAGTTAAAAAGAGTAGTTCTAGCATGAGTGCGTTGAACATAATCAGTTGTGAGATTTATTACTGCATTTCATATTACC CTACAAAAATTACTTTTACTATAATCATTTTTATCACAAAATTATTTGTGGGAACGTTGATCCTAACATGCACCAATTAC ATTATTGTTTTGTTATCTTGCAGATGTTTGTTTGATTGTATAGACTAAGGAGGGGGATAGTTTGATATTTACATGGAAGG GAGAGAAGGTATGAGCTCTGGTGTTACAGTGATAGGAGCAGAAGCTCCATCAGCATATCACATGGCACCAAGGGTTGAAG CTCCAATTCAAAACCAGGGTCCTGTTCCTGTTCCTGAAGCTTCAGCAGCTATTGTGGTCTCACCAGTGAGTGTGGGATTG GATGGAGGAGTAGTGAAGAAGAAAAGGGGCAGGCCAAGGAAATATGGGCCAGATGCTCCAGGTGGTGGTACTATGGCATT GTCGCCGTTGCCGATCTCATCTTCGGCTCCATTTTCTAATGACTTTTCGTCCGGGAAGCGGGGGAAACCGCAGGGGATGG AATACAAGCAATCCAAGAAAGCTGGGGTGGATCATCTAGGTAATTGGATTTGATGTTTTTAATGCTAATATATGTTAAAG TCTCATATTGACTAGAGATATGACTAAATAAATCCATATATAGGGGAAATAAATCTTCACCATGAGCTTGCTTTTGGGTA GAATAAAGCTTAACATGAATTTCTCTTGTCATTGTTGTTGACCTTAACATTTCTTACTTCTTGAGTAGCATTAGTAATAT AGGATGTGGGGAAAACTTTATTTTTTGAATGAAAACTTTATTTTTTGAATAAAGTTTAATTGACTAATGTGGCAAATCTT TGAAATTTGATTTGTTGACCGTGTAAAAAATCTGTACTCTTGAAAAATATATTGGATTTGACTTCTCTACTAACTCTGCT CAACATAGGAAAAATGTCAAAATGATAGTTGGGTTTTGTTTAAAATTACTCACACTGCTAAGATAATTCATAATGTATCC TCAGACGAATACAAAGCAGTATATATATAACACCATTGCTTACTTTAATTTTCAACTCAATTCTGTTAATATGCATTTTT TATGTTTCTGCAGGTGACTCTGTTGGTACAAATTTCATGCCCCATATCATTACCGTCAATGCTGGTGAGGTATGCTTATT ATGGAGGGGGAAAACATCTGTTTTTATCTTTATTTGGTATATGAGTTTGCATAAAATTTCTCTCTCAAACTATTTGCTAT GTATACACTTACCATACATCCAATCACATCCCTAAACATGCTTTTGTATCTTGTAATGCTAATTCTTCCTGCTGAAGAAT AAATTGTTTTGTTGTTTCAGGACATTACGATGAAGGTTATATCTTTTTCCCAACAAGGGCCTCGAGCTATATGCATCTTG TCTGCTAATGGTGTAATTTCAAATGTTACACTTCGCCAGCCTGATTCTTCTGGAGGAACGTTGACCTATGAGGTTCTGCT CATTATTGCATGTTTTATTTTATAATTTTCAAATTTACCTTTTCTTCATAATCACATCTTCAATTCTTTTTAAATTTTTG TATTACCTAAGTTAATTTGAAAAAAAATGTCTGTCTTACAAGATAGGACTTTTATTCAGTTTTATTTTGTGTGTATAATT GAACATTTGATGGTACTTAATGGTAATTCGCAACTTAGTATAAGTTCATCATTCACTCGGAAATTGTAGTTTTCATTTGA ATGCTTGTATGAGGTTTATCTTGGGTGGTAAAAATATCTTATTTTTACAAACTTGAATTTTTTCTCTAGGGCCGTTTTGA GATACTTTCATTGTCTGGATCATTCATGCCTACTGAAAGCCAAGGAACAAGAAGCAGATCTGGTGGGATGAGTGTTTCTT TGTCGAGCCCAGATGGCCGTGTTGTCGGTGGAGGAGTTGCTGGTCTTCTTGTCGCTGCCAGCCCTGTGCAGGTAAAACAT TCCCTGCAATCCTAATAGTAATTCTCAATCTCAACTATATGTGCATGTGAATTATATGTGTGCAGTGTGCACCTATCTGT TTCTTGGAATTTTCAGTTGGGGATGGTTTGGGTAGTAAGGTACTAAGGTTGCCTTCAGAACAGTACTCAATATCCCTTAT TTTCTGTCATGTTGATAACTTTGCCAAATAATGTATCTCAAGTCAACACAAACAATTTGTGGGTTGAGAAAACCATGGGG AGACCAAAATCATGGTGGATGGTCGCAAAAGCTAAGGGAAGTTGCTTTTGTCCACCGTGATTTTGGCTTCACCATGGTTT TCAATTCTACATGTATCCAAAGATGCATAAAATAGGCAACTCGCCTTGTTCCTATTTATAAGTCATATTCTAGAAGCTTT TTCATGTCCCTTAATATTAGTCACTTTAGAATACTAATGAATCTTAAAATATTTTTCCCCAATTTTATCCTTCATATTTA ATGCTCTATATCTAATTACCTACACTCACCCGTAATTTTTTCCAGTTTCGAGGTAATTCAGGAAAGTAACATGTTCTGAT TCATACTAATAACTACTCTTTCCAATTCATGTGAATCAGTTGAAAGTGACTTATAAATGGAAATAGATCGAGTAGCTCAG TAGCTTGCTTGCATGCAGTACTTAATAAAGGGGACCATGGAATCGTTGTGGAACCCATTTGGATAAAGACCTATTGGAGT TTATTGAAGCTTATCTACTAGAAAAAACCCTAGATTTCCAATAAGTGTTCTTTGGTTTGCATCCAAACGGGTTCATAGTG TAGCATCTGGTGCAATTTAATTTTTAACAATTTGGGCATAACATTTCTTCCTCAAATAAAGAATCACTTAGATACCTTTT GTTCTCTGTCATATCAGGTGGTGGTGGCAAGTTTTCTGCCAAGCAACCAGCAAGATCAGAAACCAAAGAAGCCAAAGTCT GATTATGCATCACCCCCAGCTACTTTTACACCAGCCACCGCAGTGTCTTCTGCACCATCCGCAGCTAATGGTGAAAAGGA AGATGTCATGAGCTCCCATCTACTGCAAAATTCTGGAGCCTTCAACCCAAACCTCGCTCCTCCTCCTCCGTCGGCCTTTC GAAGAGAAAACTGGGTTAACATGCACTCTATGCCGGATTCGATGAAGTCCGCAACTGATATTAACATATCTTTACCTGAT AATTAAGAAAATCCTCTAGTGTTGGTGACAACATTAATTCATGACTGAGCTATTTATTTAATGATTTCTTCCAGTGTTGT TCTGTGTCATGTAGGTTGTTTCAAACTTGTTGTATGGTGTCTAATGACCATAGGGTGAAGTTGTAGTTGACAAGTGTTAT TAATTTGAAGTTAGGTTTCTATTTCTTTGTCTGATAGAGCATCGGATTTGTCGGCTGATTAGGTAGATGCTGCAATCTGC AGTGGTATGAGTATGCTAATTCGAATGTAATGAGATTTGGTTGTCTATTCTAAGACTGAATTGGTTGGAGCTTTTATGTC CCACCCTGGCCTTTTGTTTTTTGATGATGTTCTTTTTTTGATATTCATTTGTGTTCATGTTATGAGCTGAGACTACAAAT TTTCATCTTAGATCTTCACTACTCGAATGAGTGTAGTGTTGGAAATTCAAGTTAGTTAGGGGTTCCACATTAGTTAAGAA TGAACGAACTGAAGTTAAGACAATATAAAAGATCTAACCCATAATTCCAGTTTCTTTAGATTAAAATATGTGCTGTTCAG ATCTTTTAGCGATCTTCGGTATTAGTCTATTAGTATCCCAATGTCTACTTAAATATTCTAGATTTGCCATAAAAGAATGC AC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0462800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGGGAGAGAAGGTATGAGCTCTGGTGTTACAGTGATAGGAGCAGAAGCTCCATCAGCATATCACATGGCACCAAG GGTTGAAGCTCCAATTCAAAACCAGGGTCCTGTTCCTGTTCCTGAAGCTTCAGCAGCTATTGTGGTCTCACCAGTGAGTG TGGGATTGGATGGAGGAGTAGTGAAGAAGAAAAGGGGCAGGCCAAGGAAATATGGGCCAGATGCTCCAGGTGGTGGTACT ATGGCATTGTCGCCGTTGCCGATCTCATCTTCGGCTCCATTTTCTAATGACTTTTCGTCCGGGAAGCGGGGGAAACCGCA GGGGATGGAATACAAGCAATCCAAGAAAGCTGGGGTGGATCATCTAGGTGACTCTGTTGGTACAAATTTCATGCCCCATA TCATTACCGTCAATGCTGGTGAGGACATTACGATGAAGGTTATATCTTTTTCCCAACAAGGGCCTCGAGCTATATGCATC TTGTCTGCTAATGGTGTAATTTCAAATGTTACACTTCGCCAGCCTGATTCTTCTGGAGGAACGTTGACCTATGAGGGCCG TTTTGAGATACTTTCATTGTCTGGATCATTCATGCCTACTGAAAGCCAAGGAACAAGAAGCAGATCTGGTGGGATGAGTG TTTCTTTGTCGAGCCCAGATGGCCGTGTTGTCGGTGGAGGAGTTGCTGGTCTTCTTGTCGCTGCCAGCCCTGTGCAGGTG GTGGTGGCAAGTTTTCTGCCAAGCAACCAGCAAGATCAGAAACCAAAGAAGCCAAAGTCTGATTATGCATCACCCCCAGC TACTTTTACACCAGCCACCGCAGTGTCTTCTGCACCATCCGCAGCTAATGGTGAAAAGGAAGATGTCATGAGCTCCCATC TACTGCAAAATTCTGGAGCCTTCAACCCAAACCTCGCTCCTCCTCCTCCGTCGGCCTTTCGAAGAGAAAACTGGGTTAAC ATGCACTCTATGCCGGATTCGATGAAGTCCGCAACTGATATTAACATATCTTTACCTGATAATTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0462800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEGREGMSSGVTVIGAEAPSAYHMAPRVEAPIQNQGPVPVPEASAAIVVSPVSVGLDGGVVKKKRGRPRKYGPDAPGGGT MALSPLPISSSAPFSNDFSSGKRGKPQGMEYKQSKKAGVDHLGDSVGTNFMPHIITVNAGEDITMKVISFSQQGPRAICI LSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTESQGTRSRSGGMSVSLSSPDGRVVGGGVAGLLVAASPVQV VVASFLPSNQQDQKPKKPKSDYASPPATFTPATAVSSAPSAANGEKEDVMSSHLLQNSGAFNPNLAPPPPSAFRRENWVN MHSMPDSMKSATDINISLPDN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31500
1 336 336 1.2E-120
IPR039605
PANTHER
PTHR31500:SF44
1 336 336 1.2E-120 –
MobiDBLite
mobidb-lite
60 81 22 - –
MobiDBLite
mobidb-lite
93 116 24 - –
ProSiteProfiles
PS51742
127 268 142 40.723
IPR005175
SUPERFAMILY
SSF117856
130 249 120 1.62E-31 –
Gene3D
G3DSA:3.30.1330.80
131 263 133 5.8E-10 –
Pfam
PF03479
132 245 114 1.8E-28
IPR005175
CDD
cd11378
132 222 91 4.86615E-27
IPR005175
MobiDBLite
mobidb-lite
249 288 40 - –
MobiDBLite
mobidb-lite
266 280 15 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003680
Molecular function AT DNA binding Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0462800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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