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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0463100 |
| Transcript ID | LotjaGi1g1v0463100.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G01970.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LPC4|PPR1_ARATH Pentatricopeptide repeat-containing protein At1g01970; TrEMBL-Plants: tr|I3T422|I3T422_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0463100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:96788324..96791650) extracted from Lotus japonicus Gifu genome v1.2.
AAATGAAAAGGTTTGAGCTCTCGAACCCATTGACTGTATGTAACAAATGCTTTACTTTTGTGGGTTCTTTTGGTTTTCGT TCTTCTTAACTGTGATTGTAGATTTTTTCCATGTTCTGGAATTTTGTATATTACCGTAACCGTAAACTGTTAGGTTTTGG ATTTTTTTTTACACTGTTGCATTGCTTGATTATTTTAATTTAAGCATTTCTTCTGGGTTTTATGCTTTAAATCTTGAATG CCATTCTGTTTTGAAGTTGAGGCTCACTGAATATATGATAAAAAAAAACTCATGTTCCTGCACTTGAGTTGTTTTTTTAA TTATTTTAGAAGGAGGAACCTTTGTGTTTTGTGTTCCTACACTCACTGGCTTGTTTTATTTTGACATGCTTGAATTTGCT TGTTGGGTTATATTACCAGTGGCGGTCACGTCACAGTTGTGTTGCGATCCTTCGTATTGCAGAAAATTGTAAACAAACAT GGCTGTTCGTGGCCAAAATCAGTCACGTTCCGGTTTCATAAACCTCCAAAACATTGACGCCGCAGCTTAAATCTTGGCTG CTGACCTTGATTTTAAACCATGCTTCTGACGATAAATGGATTAGTAACATTTGCTTCTATATTGACTTTCAGGACGCATT CAGGATCTCACCATATGGAAAATGCTATGAAATACTGACATAAAAAAGAAGGCTCATATTGTATTGTTGCGAAATGAAAG AAGGGAAAATTTCTCCTATGGCTCATTTTGTGGCGGCAGGTGGTTGCTTATTGTGATCTAGTACTTCTGATGAATGGGTT AGATACTTAAATACTTGAACGTTCCTTCTGCTTGATAGCTTGGTTGAATACCTTAGGAAATAGAAGGTTCTGTTTCATTT TTTCTATCTTACTTTAATGATGGGGACCTGTTGCTATAACCTACTAAGCAACCTTTACTACCCACCCTACTTAATTACCA ATAGTATTACCAAATTTTGTCGTGTTCAGACAAGAGGAAACTCATTATACCAAAAGCCCAGTAATTTAGATCTCCATAGA CACCGTTTTGATTCAGCATTAGTTGGTATTGGAATGGAGGAAATTGTAAAAGAAGAAGTGAAAGATGAAAACCACAGAAG GTTTAGGTGGACTGAGATAGGCCACAATATCACACACGAACAAAATGAGGCCATATCGAAACTTCCTTTCAAGATGACCA AGCGATGTAAAGCCTTGATGAGACAGATCATATGCTTTTCCGCGGAAAAAGGTAACGTATCTGATCTTTTGAACGCTTGG GTGAAGATCATGAAACCTATCAGAGCAGAGTGGCTTTCAGTTCTGAAAGAGTTGGAAACAATGGAACATCCACTTTATCT TGAGGTATTTCGCGTCGTCTATGTTTTATTTCATATAGCCTTTCCTATTGCAAAGTGTTTGGTTGTCTTTTCATATAATG CACGGTGTACTTTTTTTTCTTTCATGTTAGTAGTAAGGTTACTTTTAAAGCATATTTACTTCTGTATTTTTTCTCTGTAA ATCCTTTGAATTTGTATATCAGTACCATGCAGTTACATATTTCCTTATGGTTATGTTTGGGAAACAACTTAATTAAGCAC TCATGACAACAAGCAGTTATTTATAAGCTAATTTGAGAAAATTATTGAAAATAAGTTGTGGATAAGCATAAGCTTTTATT CCTAAGCTAATATGAACAGCTTATGAAAATAAGCTCAAAAAAGCTTATAGGTAGGGTATAAGCTATTTATATAAGCTCCC CCAAACACTTGCATAAGCACTTATGCTATAAGATTTACTCAAATAAGCTCTTCCAAGCGGGGCCTATATTTGACTTCCCA AACTATCCCTCCCTCCCACTTCTCTGGTCCTGTCTCTGTATTTTAAGTTTGATAGAAAATTGTTACATATGAATACTTAT TCCTTGTTTTGTCTTTTGTTTAGCCACTTTGCAGTTTTTTCAAAAAATATGGTTTATCTGTTGTAGAGTGCACCTTCATT CTAATTGACTGTGAGGGACGAATTTGAGGGTACAAAATTGATGTCCTATCCAATACACCCGGATTAAAGTTACTACTCAT TATGCCATGACCCATGAGAATAAAGTTGAGGGATTTAGAATGCAGTTTATTTCCTCTAGCAATGCAAACATCCTGGTAAC ATAATTAAACATCTGCTTAGTAAATTTTTGATGCAAAGAAGCAATTTACCTCATCACAATAAAAAGGAATTGGACTTTAA GCATCATGCATGGTATTCATTCAAATGTTTTTCATGGTGGATGGTCATTTTCTCATCTAGGCAACTTATTTTGAATGCAT ATGAGCGAAACGTTTTATTTGTTTTTTTCTCTATGGTCTGAAATAAAACTGGATTCATTCGCAGGTGGCAGAACATGCTC TTCTAGAAGAATCATTTGAAGTGAATATTCGTGACTATACAAACATAATCCATTATTGTGGCAAGCACAATCAACTTGAA GAGGCTGAAAATATTCTCACAGCCATGAAGCAAAGAGGCTTCATCTGTGATCAAGTGATTCTGACTACCATGGTTCACAT TTACAGCAAGGCTGGCCATCTTGACCGGGCTGAGGAATATTTTGAAGAGATTAGATTGCTTGGTGAGCCTTTGGATAAAA GATCATATGGCTCAATGATCACGGCCTACATCAGAGCCGGAATGCCTGAACGTGGAGAGAGTTTACTTGAAGAAATGGAT GCACGAGAAATATATGCTGGCAGCGAGGTTTACAAAGCATTACTCAGAGCGTACTCAAGGATTGGTAACGCTGAAGGTGC CCAAAGGGTGTTTGATGCGATTCAGCTGGCTGGTATCATCCCAGACGATAAGATTTGTGGTCTTGTTATCAAGGCCTATG GTATGGCTGGGCAAAGTGAGAAGGCTCGCATTGCGTTTGAAAACATGAAAAGAGCAGGTATTGAACCTACTGATAGATGC ATCGGTTCGGTGCTGGTTGCTTATGAGAAGGAAAGCAAGCTAAATACAGCACTGGAATTTCTGATAGATTTGGAGAAAGA GGGCATTATGGTTGGGGAAGAAGCTTCTGCAATATTGGCAGGATGGTTCCGGAAACTAGGGGTGGTGGAAGAGGTGGAGC TTGTTTTAAGAGATTTTTCCACTACTCGCGAGGTCAGTTAATGTAGAAGGTACTTTGAAGCTTGTGAGAACAATGTCCAT AAGAAGCACTCCTGTTCTCAATGTATTGTAGATTTTTTGATACGGAATGCAGTGAAATTTTGAAGAGTTTAATAACTATA TGAGAGTGTAAGTAAGCTTAACACAAACATCGAGTTCAAAACTTTAT
CDS sequence (LotjaGi1g1v0463100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGGGACCTGTTGCTATAACCTACTAAGCAACCTTTACTACCCACCCTACTTAATTACCAATAGTATTACCAAATT TTGTCGTGTTCAGACAAGAGGAAACTCATTATACCAAAAGCCCAGTAATTTAGATCTCCATAGACACCGTTTTGATTCAG CATTAGTTGGTATTGGAATGGAGGAAATTGTAAAAGAAGAAGTGAAAGATGAAAACCACAGAAGGTTTAGGTGGACTGAG ATAGGCCACAATATCACACACGAACAAAATGAGGCCATATCGAAACTTCCTTTCAAGATGACCAAGCGATGTAAAGCCTT GATGAGACAGATCATATGCTTTTCCGCGGAAAAAGGTAACGTATCTGATCTTTTGAACGCTTGGGTGAAGATCATGAAAC CTATCAGAGCAGAGTGGCTTTCAGTTCTGAAAGAGTTGGAAACAATGGAACATCCACTTTATCTTGAGGTGGCAGAACAT GCTCTTCTAGAAGAATCATTTGAAGTGAATATTCGTGACTATACAAACATAATCCATTATTGTGGCAAGCACAATCAACT TGAAGAGGCTGAAAATATTCTCACAGCCATGAAGCAAAGAGGCTTCATCTGTGATCAAGTGATTCTGACTACCATGGTTC ACATTTACAGCAAGGCTGGCCATCTTGACCGGGCTGAGGAATATTTTGAAGAGATTAGATTGCTTGGTGAGCCTTTGGAT AAAAGATCATATGGCTCAATGATCACGGCCTACATCAGAGCCGGAATGCCTGAACGTGGAGAGAGTTTACTTGAAGAAAT GGATGCACGAGAAATATATGCTGGCAGCGAGGTTTACAAAGCATTACTCAGAGCGTACTCAAGGATTGGTAACGCTGAAG GTGCCCAAAGGGTGTTTGATGCGATTCAGCTGGCTGGTATCATCCCAGACGATAAGATTTGTGGTCTTGTTATCAAGGCC TATGGTATGGCTGGGCAAAGTGAGAAGGCTCGCATTGCGTTTGAAAACATGAAAAGAGCAGGTATTGAACCTACTGATAG ATGCATCGGTTCGGTGCTGGTTGCTTATGAGAAGGAAAGCAAGCTAAATACAGCACTGGAATTTCTGATAGATTTGGAGA AAGAGGGCATTATGGTTGGGGAAGAAGCTTCTGCAATATTGGCAGGATGGTTCCGGAAACTAGGGGTGGTGGAAGAGGTG GAGCTTGTTTTAAGAGATTTTTCCACTACTCGCGAGGTCAGTTAA
Protein sequence (LotjaGi1g1v0463100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMGTCCYNLLSNLYYPPYLITNSITKFCRVQTRGNSLYQKPSNLDLHRHRFDSALVGIGMEEIVKEEVKDENHRRFRWTE IGHNITHEQNEAISKLPFKMTKRCKALMRQIICFSAEKGNVSDLLNAWVKIMKPIRAEWLSVLKELETMEHPLYLEVAEH ALLEESFEVNIRDYTNIIHYCGKHNQLEEAENILTAMKQRGFICDQVILTTMVHIYSKAGHLDRAEEYFEEIRLLGEPLD KRSYGSMITAYIRAGMPERGESLLEEMDAREIYAGSEVYKALLRAYSRIGNAEGAQRVFDAIQLAGIIPDDKICGLVIKA YGMAGQSEKARIAFENMKRAGIEPTDRCIGSVLVAYEKESKLNTALEFLIDLEKEGIMVGEEASAILAGWFRKLGVVEEV ELVLRDFSTTREVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 412 | 412 | 1.5E-193 | – | |
| PANTHER | 1 | 412 | 412 | 1.5E-193 | – | |
| Gene3D | 155 | 305 | 151 | 7.8E-33 | ||
| Pfam | 160 | 293 | 134 | 1.4E-7 | ||
| ProSiteProfiles | 170 | 204 | 35 | 9.295 | ||
| TIGRFAM | 174 | 205 | 32 | 2.0E-4 | ||
| ProSiteProfiles | 205 | 239 | 35 | 9.306 | ||
| TIGRFAM | 208 | 238 | 31 | 5.8E-4 | ||
| ProSiteProfiles | 240 | 274 | 35 | 10.128 | ||
| TIGRFAM | 243 | 273 | 31 | 2.9E-5 | ||
| ProSiteProfiles | 275 | 309 | 35 | 9.591 | ||
| Gene3D | 309 | 401 | 93 | 3.1E-9 | ||
| ProSiteProfiles | 310 | 344 | 35 | 9.953 | ||
| TIGRFAM | 314 | 345 | 32 | 3.8E-4 | ||
| Pfam | 316 | 342 | 27 | 0.012 | ||
| ProSiteProfiles | 345 | 379 | 35 | 5.974 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0463100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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