Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0463600 |
| Transcript ID | LotjaGi1g1v0463600.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 4-hydroxy-tetrahydrodipicolinate synthase; TAIR: AT2G45440.1 dihydrodipicolinate synthase; Swiss-Prot: sp|Q42800|DAPA_SOYBN 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic; TrEMBL-Plants: tr|I1L6T8|I1L6T8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0463600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:96894261..96899113) extracted from Lotus japonicus Gifu genome v1.2.
GGAAACGTCGTCGTTTTTCCCTTTTTGAGTTGAAAAAAAAAATAAAAACAAAAAGTAAGTAAAGGCAGGACACGTGTCGG AACGCAATTGGCAGTCTTTTAGCTACAGTAGTGGAAGAATAAGAAGTAGTAGATGACACCTAGTCCTAAAAATATTCTTC ATTTTTTTTTCTTCTGGATAACTAAAATTAAGCTCCCTTACAAAATCAAAATCAGAACTAATTTAACCATTAACCATTTT TATTAATGAGCACTTTAGTTTAATAATAATAATAATGACAAATTGACAATTATTATTAGTTAAAGTGTGACAATCTAGTT TTCCTCGCGTCGCGCCCCTATTTGGTTCCGCACACCGAAATATAAACTTGTCTTCTCCAATCAGCCGCCACTACCACCAA ACTCTGCACAAACCAACACTCTCAAAGCGCCGTCGTTTTCCTCCCTCTAGGGTTTTCCCTCGGCGGCTGAAACCTCATCA GCGTTATCGGATTCCAATCTTCGTCAGCGATGGCCATTTTGAAGAGCTACAGCACCGTGTGCATCACAGGAACCGGTTTT CCTGTTTGCCCCTCCAATGCCACCAACAATAAAACCACCAGGTTCAGTTTTGTTTATGTATTTTCACTATTTTTTGAGCT TGTAGTTTGTTAAATCATTTGCATGTTTTGTATTTTTTGTTGTTGTTGTTGTTGTTGTTTGTTTCTGATTTTTTCAATGT CCTTATTTTCTTTTGGGTTTATGAAGATTTGGGTTTGGGAAATTGTTAATTGTAAATTCCAAGTTGATATGTTTGATTCC TGGTGAATCAGTCATTGCAGTGTTATTTCTGCATGGTGGGTTTCAAAAAGATTGTATTTTAAAACATTTTTAGTTCTGAT TTTGTGTTTATTTAAATATGGGTGGATGATGGCTGAATTCATGTCTTGAAGGAATGGAAAAATGGGTTTCTGGGTAAGCA CTGTTGGTGAGGTTGTTTATGATTGCATTATAGTAATCTAGTTGTTTATGAATAATGATTTTGTAGGATTGTGTAACTGC TTGTGAGTTTGTTCATTGACCTCCTACCATTTTTTAAGGCCAACTCTACCCATTTTAATAATAGCATGTCACCATCGGTT TGATTCTTGTGTATTCGTTGTAACTTTAAGGTGATAACCTTAATTTGTTTTTTAAGTTTTAATCAAGCTGCCTTGTGAAA ATGATTGATTATGAGGGAAAAAAATGATTTATGTTATCTCTTCCCAGATGTTTCAAAGTTTTATGTTTTTAATTTTTCTA AGGTTAATGTTTATTCTTTTGGAATGACTTCTATTTGGTCTTCTAATTGCAATATGGTTTTTGTAGTGTCATTTGTGATA TATATTATGTATATAGACACACACACCCACGCACATACATATGTTGTATATATATAAAGCTGGTGATTGTGCTAAAAAAT ATCAATATCATACCATTAATTCATCCTTCATTTTGTTTAATGTTTAAACATTTTTCTGTGTTAATCAGGAACTCATGCTG GAAGCCTGCACAGGCAGCCTTGAAACCCAACTTCCACCTCCCGATGCGCAGTTTTGAGTTGAAAAATAGGTAGTTTTGAA TAACGAATTTACTGTTCCAAAATTATTAGTTCTACATTTTCCATTTGTTTTGATCTCTTCATATCCTAGGTGTTGTTTTA TATATTGTGTGTAGTTATGTGTGTATTCTGTAGATTTGGTGGAAACTTAATTTGCATTTGCTTTTCCTCTATCATGCATT TTGAGATTTTGCTGGATATGCAGGGCTTACTAGATACATGCCTTTGATCTGCTAAGCTGTTTTACATATTTGATGTATAT ATTTTTTTTCTTGGTGTAACTGTAGGAGTACATATTTTAAGTAGTGTATCAAAAGATGTTCTCTTGCGTTTCTCGCTTCA TGGCTTCCTATTGGTATTGCTGGTTTTGTTTGCAAATCTGGATCACTAAAATCTGTACAAATGAAACTATATGTATGGTA TTTACAGGACTTCGACCGAGGACATAAAAAGTCTGAGATTGATAACAGCCATTAAAACTCCATACCTACCTGATGGTCGA TTTGATCTTGAAGCATACGATAACTTGGTGAATACACAGATTGAAAATGGAGTTGAAGGTGTTATTGTTGGTGGCACAAC TGGTGAAGGCCAATTAATGAGCTGGGAAGAGCACATAATGCTCATTGCGCACACAGTCAACTGTTTTGGTGGTAACATTA AGGTCATTGGAAACACTGGAAGCAACTCCACCAGGGAAGCGATTCATGCCACGGAGCAGGGTTTTGCTGTTGGAATGCAT GGTGCCCTTCACATAAACCCCTACTATGGAAAAACTTCTTTGGATGGTATGATTGCTCACTTTCAAAGTGTGTTTTCAAT GGGGCCTTCGATCATATATAATGTGCCTTCACGGACTGGTCAAGACATTCCTCCAGATGTAATTCAAACCATAGCTCAAA GTGCTTACTTTGCTGGTGTCAAGGAATGCGTGGGAAATGACCGGATCAAGCAGTATACAGATAATGACATTGTTGTATGG AGTGGGAATGATGATCAATGCCATGATGCTAGATGGGGTTATGGGGCTACTGGAGTGATATCTGTTGCAAGCAACCTAAT TCCTGGTTTAATGCGGGAACTCATGTTTCGGGGCGAAAATCCTTTACTGAATTCTAGGCTCTTGCCTCTGATTGACTGGC TTTTCCACATGCCAAATCCCATCGGTTTGAATACGGCTCTCGCTCAACTTGGAGTTGTCAGGCCGGTTTTTAGGCTACCA TTTGTACCCCTTCCTGTGGATAAAAGGATAGAATTCGCCAATTTGGTGAAGGCAATTGGTCGAGAGCATTTTGTTGGAGA TAGAGATGTTGAGGTTCTTGATGATGACGACTTTTTCTTGGTTAGTCGCTATTGATTTAGTTTACCTTATAGGCTCGTTG CACCGTTTCTGAAGTTTTCTCACATGATCATGTATGTTGTAATGAAGTTAAATTAAACTCGACAACAAATATCTAGTTTC TTTTGAGTGACTCTACTTTGTAGTTTGAAACTGGTTCAATATTTTTCGGAAGTATAACTCCTACTTCATATTGTATTGAC CTTGTTTAAATTCTGCTAAACATCCTTTACCCTAAACAAAAGTTGATCGGTTTTGTTTCGGGATTTTTTTTACTGACATA ACAACACTAACCCACTTAGAACTCAGACTTCAGTTTAGAAGTTAAGACACTGGAGGTGGGCATCAAAGCAGTGAAACTTT AGTTTATGATGAGTAACTATTCCTGAATCCTGATTTTCTTCCCATTTGTTCCTCTGTATGACAGTTTTCTAATTTCTATC CTTCCCTTTTCTTCTCCTTAGTGTTCTGTGTTTTGATGATGAGACTTTTCCTTATATCTCAAGATTTTTGCCTATTGGAG ACTTCATTTGTATAACCTTCTTCTTACCTCAGAATTTTCCCTATTGGACACTTGAGTCCAGTCCAGTGATTTGTATGTCC AGTGACTTGAGTCCAGTCCAGTGATTTGTATGTTGCATACATGATACATTCACTCCGTATTGATGCTAACCAAAAATCAC TTATTGGAGCTTAGCTAGTGCTTTTTCTAATAGGTAGGCTCCAATAAGTGTGTATCCAAAATATCACTGGAAATTTCCTG TAGCGATATCTGGATGCACCTGTATGATGAGTCTTGAATCTCTTTTTCACTAAGCATGTATTTTGCTCCTGAGAACTGAG CGATTTGGCATCGCTGCTACTGAGATACTATGTAATCAAATAGTTGAACATGAAACTTGTGATTTGTCTTACATTTGCTC TTAGGTAACAATGTCAATAATGAGTAAAGATCAGAATTCAGAATTGTGACGGATATGTGCAAAAGGGTAGGATTTTTATC CATTAAATAGGTTTGATTGAGTCTGAGAGAACTCTGCATTTTTTTTTGCTGAGTATGGTTACCATATTCCACCCTTCTAT ACCTACACAATATATTCATGTTTTATAATTAGGATTTGAAAATTATTTTTAATATTTATAATTTGAATCAGGTCTTACGC TTTCAATCAATACAGGAGTGTGAATACTAAGTGTTATTTACACATTTGAATCTGGATGTGATTTTTATCTTCAAAGTACA AGTATGTTGATAGAATAATGTGATAGCTACATAATACAGGTAATGATATGTAGGATCTGAGTAGGACATCATAGTACTCA TCCTTTCATCTGCATTTTAAAATAATACATGTACCCAAACTCATACCCATGTGGGTATTGGGTACAATGTTGACAGTTGT ATGCCCGTTGAGTGCTTATATAATTATATACTTGGGATGAACATATTATCAGCATTTAAGTTAACTTTTTTTGGTTGTAT TTTAATTAACTTGAATTTACTTTAGCGTGATTAGTTTGTTTGACAAATTAATAAAATATTAATGTTATTACAATAACAAT ATATTAACGATGTACACAATATTGATTAGAAGTACAACATATAACTCAATTGAAAAAAAATCTAAAGATCATCTAACCTG TAATTATAAAACATTAGAAACATATTAGTTGCGCCAGATGAATGCAGGAACTTGTTGGCTGCAGCGACTCACTCTGCAGG CCCTGAACTAGATGCCAATGTCTCTGAGGTCCTTTGCCTTGGGTGGGCAATCTCCTTATGTTGAGATCTCTGCTTCACTA ACTTTGTCTTTGAAACAGATTGTTTGAAGCTGGTTCAGGCTTGGACGTCGCATTGCTAGAATTCTTACTTTCACTCTTTG GTTCAAGATTGTAGAGTGTCTATTACTAGCCTAGGACCTGGTGCATGTCAAGC
CDS sequence (LotjaGi1g1v0463600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCATTTTGAAGAGCTACAGCACCGTGTGCATCACAGGAACCGGTTTTCCTGTTTGCCCCTCCAATGCCACCAACAA TAAAACCACCAGGAACTCATGCTGGAAGCCTGCACAGGCAGCCTTGAAACCCAACTTCCACCTCCCGATGCGCAGTTTTG AGTTGAAAAATAGGACTTCGACCGAGGACATAAAAAGTCTGAGATTGATAACAGCCATTAAAACTCCATACCTACCTGAT GGTCGATTTGATCTTGAAGCATACGATAACTTGGTGAATACACAGATTGAAAATGGAGTTGAAGGTGTTATTGTTGGTGG CACAACTGGTGAAGGCCAATTAATGAGCTGGGAAGAGCACATAATGCTCATTGCGCACACAGTCAACTGTTTTGGTGGTA ACATTAAGGTCATTGGAAACACTGGAAGCAACTCCACCAGGGAAGCGATTCATGCCACGGAGCAGGGTTTTGCTGTTGGA ATGCATGGTGCCCTTCACATAAACCCCTACTATGGAAAAACTTCTTTGGATGGTATGATTGCTCACTTTCAAAGTGTGTT TTCAATGGGGCCTTCGATCATATATAATGTGCCTTCACGGACTGGTCAAGACATTCCTCCAGATGTAATTCAAACCATAG CTCAAAGTGCTTACTTTGCTGGTGTCAAGGAATGCGTGGGAAATGACCGGATCAAGCAGTATACAGATAATGACATTGTT GTATGGAGTGGGAATGATGATCAATGCCATGATGCTAGATGGGGTTATGGGGCTACTGGAGTGATATCTGTTGCAAGCAA CCTAATTCCTGGTTTAATGCGGGAACTCATGTTTCGGGGCGAAAATCCTTTACTGAATTCTAGGCTCTTGCCTCTGATTG ACTGGCTTTTCCACATGCCAAATCCCATCGGTTTGAATACGGCTCTCGCTCAACTTGGAGTTGTCAGGCCGGTTTTTAGG CTACCATTTGTACCCCTTCCTGTGGATAAAAGGATAGAATTCGCCAATTTGGTGAAGGCAATTGGTCGAGAGCATTTTGT TGGAGATAGAGATGTTGAGGTTCTTGATGATGACGACTTTTTCTTGGTTAGTCGCTATTGA
Protein sequence (LotjaGi1g1v0463600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAILKSYSTVCITGTGFPVCPSNATNNKTTRNSCWKPAQAALKPNFHLPMRSFELKNRTSTEDIKSLRLITAIKTPYLPD GRFDLEAYDNLVNTQIENGVEGVIVGGTTGEGQLMSWEEHIMLIAHTVNCFGGNIKVIGNTGSNSTREAIHATEQGFAVG MHGALHINPYYGKTSLDGMIAHFQSVFSMGPSIIYNVPSRTGQDIPPDVIQTIAQSAYFAGVKECVGNDRIKQYTDNDIV VWSGNDDQCHDARWGYGATGVISVASNLIPGLMRELMFRGENPLLNSRLLPLIDWLFHMPNPIGLNTALAQLGVVRPVFR LPFVPLPVDKRIEFANLVKAIGREHFVGDRDVEVLDDDDFFLVSRY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| PANTHER | 20 | 360 | 341 | 1.7E-190 | – | |
| PANTHER | 20 | 360 | 341 | 1.7E-190 | ||
| Gene3D | 60 | 366 | 307 | 4.3E-116 | ||
| SMART | 66 | 342 | 277 | 9.8E-72 | ||
| Pfam | 67 | 340 | 274 | 4.0E-91 | ||
| CDD | 68 | 338 | 271 | 2.02215E-114 | ||
| TIGRFAM | 69 | 338 | 270 | 7.5E-66 | ||
| SUPERFAMILY | 69 | 341 | 273 | 5.86E-65 | – | |
| PRINTS | 99 | 120 | 22 | 1.7E-37 | ||
| ProSitePatterns | 102 | 119 | 18 | - | ||
| PRINTS | 135 | 153 | 19 | 1.7E-37 | ||
| PRINTS | 167 | 183 | 17 | 1.7E-37 | ||
| PRINTS | 190 | 207 | 18 | 1.7E-37 | ||
| ProSitePatterns | 195 | 225 | 31 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | 4-hydroxy-tetrahydrodipicolinate synthase | Catalysis of the reaction: pyruvate + L-aspartate-4-semialdehyde = (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + H2O. | ||
| Biological process | Lysine biosynthetic process via diaminopimelate | The chemical reactions and pathways resulting in the formation of lysine, via the intermediate diaminopimelate. | ||
| Molecular function | Lyase activity | Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. |
Expression pattern of LotjaGi1g1v0463600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…