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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0463600 |
| Transcript ID | LotjaGi1g1v0463600.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 4-hydroxy-tetrahydrodipicolinate synthase; TAIR: AT2G45440.1 dihydrodipicolinate synthase; Swiss-Prot: sp|Q42800|DAPA_SOYBN 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic; TrEMBL-Plants: tr|I1L6T8|I1L6T8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0463600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:96895683..96897195) extracted from Lotus japonicus Gifu genome v1.2.
GTGATTGTGCTAAAAAATATCAATATCATACCATTAATTCATCCTTCATTTTGTTTAATGTTTAAACATTTTTCTGTGTT AATCAGGAACTCATGCTGGAAGCCTGCACAGGCAGCCTTGAAACCCAACTTCCACCTCCCGATGCGCAGTTTTGAGTTGA AAAATAGGTAGTTTTGAATAACGAATTTACTGTTCCAAAATTATTAGTTCTACATTTTCCATTTGTTTTGATCTCTTCAT ATCCTAGGTGTTGTTTTATATATTGTGTGTAGTTATGTGTGTATTCTGTAGATTTGGTGGAAACTTAATTTGCATTTGCT TTTCCTCTATCATGCATTTTGAGATTTTGCTGGATATGCAGGGCTTACTAGATACATGCCTTTGATCTGCTAAGCTGTTT TACATATTTGATGTATATATTTTTTTTCTTGGTGTAACTGTAGGAGTACATATTTTAAGTAGTGTATCAAAAGATGTTCT CTTGCGTTTCTCGCTTCATGGCTTCCTATTGGTATTGCTGGTTTTGTTTGCAAATCTGGATCACTAAAATCTGTACAAAT GAAACTATATGTATGGTATTTACAGGACTTCGACCGAGGACATAAAAAGTCTGAGATTGATAACAGCCATTAAAACTCCA TACCTACCTGATGGTCGATTTGATCTTGAAGCATACGATAACTTGGTGAATACACAGATTGAAAATGGAGTTGAAGGTGT TATTGTTGGTGGCACAACTGGTGAAGGCCAATTAATGAGCTGGGAAGAGCACATAATGCTCATTGCGCACACAGTCAACT GTTTTGGTGGTAACATTAAGGTCATTGGAAACACTGGAAGCAACTCCACCAGGGAAGCGATTCATGCCACGGAGCAGGGT TTTGCTGTTGGAATGCATGGTGCCCTTCACATAAACCCCTACTATGGAAAAACTTCTTTGGATGGTATGATTGCTCACTT TCAAAGTGTGTTTTCAATGGGGCCTTCGATCATATATAATGTGCCTTCACGGACTGGTCAAGACATTCCTCCAGATGTAA TTCAAACCATAGCTCAAAGTGCTTACTTTGCTGGTGTCAAGGAATGCGTGGGAAATGACCGGATCAAGCAGTATACAGAT AATGACATTGTTGTATGGAGTGGGAATGATGATCAATGCCATGATGCTAGATGGGGTTATGGGGCTACTGGAGTGATATC TGTTGCAAGCAACCTAATTCCTGGTTTAATGCGGGAACTCATGTTTCGGGGCGAAAATCCTTTACTGAATTCTAGGCTCT TGCCTCTGATTGACTGGCTTTTCCACATGCCAAATCCCATCGGTTTGAATACGGCTCTCGCTCAACTTGGAGTTGTCAGG CCGGTTTTTAGGCTACCATTTGTACCCCTTCCTGTGGATAAAAGGATAGAATTCGCCAATTTGGTGAAGGCAATTGGTCG AGAGCATTTTGTTGGAGATAGAGATGTTGAGGTTCTTGATGATGACGACTTTTTCTTGGTTAGTCGCTATTGA
CDS sequence (LotjaGi1g1v0463600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTAAACATTTTTCTGTGTTAATCAGGAACTCATGCTGGAAGCCTGCACAGGCAGCCTTGAAACCCAACTTCCACCT CCCGATGCGCAGTTTTGAGTTGAAAAATAGGACTTCGACCGAGGACATAAAAAGTCTGAGATTGATAACAGCCATTAAAA CTCCATACCTACCTGATGGTCGATTTGATCTTGAAGCATACGATAACTTGGTGAATACACAGATTGAAAATGGAGTTGAA GGTGTTATTGTTGGTGGCACAACTGGTGAAGGCCAATTAATGAGCTGGGAAGAGCACATAATGCTCATTGCGCACACAGT CAACTGTTTTGGTGGTAACATTAAGGTCATTGGAAACACTGGAAGCAACTCCACCAGGGAAGCGATTCATGCCACGGAGC AGGGTTTTGCTGTTGGAATGCATGGTGCCCTTCACATAAACCCCTACTATGGAAAAACTTCTTTGGATGGTATGATTGCT CACTTTCAAAGTGTGTTTTCAATGGGGCCTTCGATCATATATAATGTGCCTTCACGGACTGGTCAAGACATTCCTCCAGA TGTAATTCAAACCATAGCTCAAAGTGCTTACTTTGCTGGTGTCAAGGAATGCGTGGGAAATGACCGGATCAAGCAGTATA CAGATAATGACATTGTTGTATGGAGTGGGAATGATGATCAATGCCATGATGCTAGATGGGGTTATGGGGCTACTGGAGTG ATATCTGTTGCAAGCAACCTAATTCCTGGTTTAATGCGGGAACTCATGTTTCGGGGCGAAAATCCTTTACTGAATTCTAG GCTCTTGCCTCTGATTGACTGGCTTTTCCACATGCCAAATCCCATCGGTTTGAATACGGCTCTCGCTCAACTTGGAGTTG TCAGGCCGGTTTTTAGGCTACCATTTGTACCCCTTCCTGTGGATAAAAGGATAGAATTCGCCAATTTGGTGAAGGCAATT GGTCGAGAGCATTTTGTTGGAGATAGAGATGTTGAGGTTCTTGATGATGACGACTTTTTCTTGGTTAGTCGCTATTGA
Protein sequence (LotjaGi1g1v0463600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFKHFSVLIRNSCWKPAQAALKPNFHLPMRSFELKNRTSTEDIKSLRLITAIKTPYLPDGRFDLEAYDNLVNTQIENGVE GVIVGGTTGEGQLMSWEEHIMLIAHTVNCFGGNIKVIGNTGSNSTREAIHATEQGFAVGMHGALHINPYYGKTSLDGMIA HFQSVFSMGPSIIYNVPSRTGQDIPPDVIQTIAQSAYFAGVKECVGNDRIKQYTDNDIVVWSGNDDQCHDARWGYGATGV ISVASNLIPGLMRELMFRGENPLLNSRLLPLIDWLFHMPNPIGLNTALAQLGVVRPVFRLPFVPLPVDKRIEFANLVKAI GREHFVGDRDVEVLDDDDFFLVSRY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 19 | 19 | - | – | |
| PANTHER | 7 | 339 | 333 | 4.4E-190 | ||
| PANTHER | 7 | 339 | 333 | 4.4E-190 | – | |
| Gene3D | 39 | 345 | 307 | 3.4E-116 | ||
| PIRSF | 40 | 331 | 292 | 2.4E-112 | ||
| SMART | 45 | 321 | 277 | 9.8E-72 | ||
| Pfam | 46 | 319 | 274 | 3.3E-91 | ||
| CDD | 47 | 317 | 271 | 7.1882E-115 | ||
| TIGRFAM | 48 | 317 | 270 | 6.2E-66 | ||
| SUPERFAMILY | 48 | 320 | 273 | 4.81E-65 | – | |
| PRINTS | 78 | 99 | 22 | 1.4E-37 | ||
| ProSitePatterns | 81 | 98 | 18 | - | ||
| PRINTS | 114 | 132 | 19 | 1.4E-37 | ||
| PRINTS | 146 | 162 | 17 | 1.4E-37 | ||
| PRINTS | 169 | 186 | 18 | 1.4E-37 | ||
| ProSitePatterns | 174 | 204 | 31 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | 4-hydroxy-tetrahydrodipicolinate synthase | Catalysis of the reaction: pyruvate + L-aspartate-4-semialdehyde = (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + H2O. | ||
| Biological process | Lysine biosynthetic process via diaminopimelate | The chemical reactions and pathways resulting in the formation of lysine, via the intermediate diaminopimelate. | ||
| Molecular function | Lyase activity | Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. |
Expression pattern of LotjaGi1g1v0463600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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