Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0463600.4

Overview

Field Value
Gene ID LotjaGi1g1v0463600
Transcript ID LotjaGi1g1v0463600.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description 4-hydroxy-tetrahydrodipicolinate synthase; TAIR: AT3G60880.1 dihydrodipicolinate synthase 1; Swiss-Prot: sp|Q42800|DAPA_SOYBN 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic; TrEMBL-Plants: tr|G7L0A3|G7L0A3_MEDTR 4-hydroxy-tetrahydrodipicolinate synthase; Found in the gene: LotjaGi1g1v0463600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:96896089..96897195) extracted from Lotus japonicus Gifu genome v1.2.

TTTGATGTATATATTTTTTTTCTTGGTGTAACTGTAGGAGTACATATTTTAAGTAGTGTATCAAAAGATGTTCTCTTGCG TTTCTCGCTTCATGGCTTCCTATTGGTATTGCTGGTTTTGTTTGCAAATCTGGATCACTAAAATCTGTACAAATGAAACT ATATGTATGGTATTTACAGGACTTCGACCGAGGACATAAAAAGTCTGAGATTGATAACAGCCATTAAAACTCCATACCTA CCTGATGGTCGATTTGATCTTGAAGCATACGATAACTTGGTGAATACACAGATTGAAAATGGAGTTGAAGGTGTTATTGT TGGTGGCACAACTGGTGAAGGCCAATTAATGAGCTGGGAAGAGCACATAATGCTCATTGCGCACACAGTCAACTGTTTTG GTGGTAACATTAAGGTCATTGGAAACACTGGAAGCAACTCCACCAGGGAAGCGATTCATGCCACGGAGCAGGGTTTTGCT GTTGGAATGCATGGTGCCCTTCACATAAACCCCTACTATGGAAAAACTTCTTTGGATGGTATGATTGCTCACTTTCAAAG TGTGTTTTCAATGGGGCCTTCGATCATATATAATGTGCCTTCACGGACTGGTCAAGACATTCCTCCAGATGTAATTCAAA CCATAGCTCAAAGTGCTTACTTTGCTGGTGTCAAGGAATGCGTGGGAAATGACCGGATCAAGCAGTATACAGATAATGAC ATTGTTGTATGGAGTGGGAATGATGATCAATGCCATGATGCTAGATGGGGTTATGGGGCTACTGGAGTGATATCTGTTGC AAGCAACCTAATTCCTGGTTTAATGCGGGAACTCATGTTTCGGGGCGAAAATCCTTTACTGAATTCTAGGCTCTTGCCTC TGATTGACTGGCTTTTCCACATGCCAAATCCCATCGGTTTGAATACGGCTCTCGCTCAACTTGGAGTTGTCAGGCCGGTT TTTAGGCTACCATTTGTACCCCTTCCTGTGGATAAAAGGATAGAATTCGCCAATTTGGTGAAGGCAATTGGTCGAGAGCA TTTTGTTGGAGATAGAGATGTTGAGGTTCTTGATGATGACGACTTTTTCTTGGTTAGTCGCTATTGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0463600.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTATGGTATTTACAGGACTTCGACCGAGGACATAAAAAGTCTGAGATTGATAACAGCCATTAAAACTCCATACCTACC TGATGGTCGATTTGATCTTGAAGCATACGATAACTTGGTGAATACACAGATTGAAAATGGAGTTGAAGGTGTTATTGTTG GTGGCACAACTGGTGAAGGCCAATTAATGAGCTGGGAAGAGCACATAATGCTCATTGCGCACACAGTCAACTGTTTTGGT GGTAACATTAAGGTCATTGGAAACACTGGAAGCAACTCCACCAGGGAAGCGATTCATGCCACGGAGCAGGGTTTTGCTGT TGGAATGCATGGTGCCCTTCACATAAACCCCTACTATGGAAAAACTTCTTTGGATGGTATGATTGCTCACTTTCAAAGTG TGTTTTCAATGGGGCCTTCGATCATATATAATGTGCCTTCACGGACTGGTCAAGACATTCCTCCAGATGTAATTCAAACC ATAGCTCAAAGTGCTTACTTTGCTGGTGTCAAGGAATGCGTGGGAAATGACCGGATCAAGCAGTATACAGATAATGACAT TGTTGTATGGAGTGGGAATGATGATCAATGCCATGATGCTAGATGGGGTTATGGGGCTACTGGAGTGATATCTGTTGCAA GCAACCTAATTCCTGGTTTAATGCGGGAACTCATGTTTCGGGGCGAAAATCCTTTACTGAATTCTAGGCTCTTGCCTCTG ATTGACTGGCTTTTCCACATGCCAAATCCCATCGGTTTGAATACGGCTCTCGCTCAACTTGGAGTTGTCAGGCCGGTTTT TAGGCTACCATTTGTACCCCTTCCTGTGGATAAAAGGATAGAATTCGCCAATTTGGTGAAGGCAATTGGTCGAGAGCATT TTGTTGGAGATAGAGATGTTGAGGTTCTTGATGATGACGACTTTTTCTTGGTTAGTCGCTATTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0463600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MYGIYRTSTEDIKSLRLITAIKTPYLPDGRFDLEAYDNLVNTQIENGVEGVIVGGTTGEGQLMSWEEHIMLIAHTVNCFG GNIKVIGNTGSNSTREAIHATEQGFAVGMHGALHINPYYGKTSLDGMIAHFQSVFSMGPSIIYNVPSRTGQDIPPDVIQT IAQSAYFAGVKECVGNDRIKQYTDNDIVVWSGNDDQCHDARWGYGATGVISVASNLIPGLMRELMFRGENPLLNSRLLPL IDWLFHMPNPIGLNTALAQLGVVRPVFRLPFVPLPVDKRIEFANLVKAIGREHFVGDRDVEVLDDDDFFLVSRY
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12128:SF56
6 308 303 1.8E-181 –
PANTHER
PTHR12128
6 308 303 1.8E-181
IPR002220
Gene3D
G3DSA:3.20.20.70
8 314 307 2.4E-116
IPR013785
PIRSF
PIRSF001365
9 300 292 1.7E-112
IPR002220
SMART
SM01130
14 290 277 9.8E-72
IPR002220
Pfam
PF00701
15 288 274 2.3E-91
IPR002220
CDD
cd00950
16 286 271 1.86841E-114
IPR005263
SUPERFAMILY
SSF51569
17 289 273 3.45E-65 –
TIGRFAM
TIGR00674
17 286 270 4.4E-66
IPR005263
PRINTS
PR00146
47 68 22 1.0E-37
IPR002220
ProSitePatterns
PS00665
50 67 18 -
IPR020624
PRINTS
PR00146
83 101 19 1.0E-37
IPR002220
PRINTS
PR00146
115 131 17 1.0E-37
IPR002220
PRINTS
PR00146
138 155 18 1.0E-37
IPR002220
ProSitePatterns
PS00666
143 173 31 -
IPR020625

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0008840
Molecular function 4-hydroxy-tetrahydrodipicolinate synthase Catalysis of the reaction: pyruvate + L-aspartate-4-semialdehyde = (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + H2O.
Subterm of
GO:0009089
Biological process Lysine biosynthetic process via diaminopimelate The chemical reactions and pathways resulting in the formation of lysine, via the intermediate diaminopimelate.
Subterm of
GO:0016829
Molecular function Lyase activity Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0463600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…