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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0465600 |
Transcript ID | LotjaGi1g1v0465600.3 |
Related isoforms 5 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Extended synaptotagmin-2; TAIR: AT3G61050.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|Q8L706|SYT5_ARATH Synaptotagmin-5; TrEMBL-Plants: tr|G7L1E7|G7L1E7_MEDTR C2 calcium/lipid-binding and GRAM domain protein; Found in the gene: LotjaGi1g1v0465600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:97359233..97364634) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGGTTGTTTTTTGGGATTTTTCTGGGGGTAGTATTCGGCGTAGCATTGATGGCTGGTTGGGAGCGCATGATGAGGTA CCGGAGTGCCAAGCGAATTGCAAAGGTATGGTGGTTTGAGCTGTTTTTCTTGAATTTGGTTGTGTTGATCAATGTATTGG GAATTGTCTTGATCAATGTTTTGGAAATGTTATGCATTTGTTTGGAATGTGTAATGTTGAAGAAAAGTTGATGAATTGAA ATGTGATAAGTGGGTAATGTGGAACAAAACAACCATTAGCCTTCTAATGCAGTTTTGATTTTTATGTGACTTTGGGTTCA GATTCTTGAAAAAAGTATGCTGAAACAAGGCTTGAAAAATGAATGCTGGGGGAAAAATACAGAGTGTGCTTTTTTTAAGC AATTGGTTTTGTTAGAAATAATAAGGACACACTTCATAGATGAAGATTTGAGAACATATCATACAGGAAGTCTTATGTAT AAGTTACCTTGGATCCATCATACACAATATTGAGGAGATATAGAGAAATGCTTTGGGTGTGATTTGTGATAGAAAGATTT CATTCACTTTAAAGGAAAATTTTACCATAGCTTTAAGACTTGCAGTATTGTATGAAACTAAAGTTAAGCAGTGACACTTA TTTAGGCTATGCCTATTTACCCAAAAGATAGTTTACGGGTAAGGATTGCTCTACCCATTATAAATACCTATTTAACCATA TCTCTAGTCAATGTGAGACCATAACAGTTAACACTCCCACGCTGTCCTAAAATAATCACAGGCTAGATTGTTTTTGTTAT TTTTTCTTAGAGCAGCCGTGGGTGAGGTTGATTCTTGAACTTTAAACTTCAGCAGGTGGCCAGCATGAGCCCAATAACGA ATTTAGGATTGAGTCAGATACCATGTTGAGAATTTTAGCTTTGCCTAACTATACCCCAAAAGCTAGCTTAGGGGTGAGCA CTGCCCTTCCTTTTATAAGTTTCATTTCTGTAGTCAATGTAGGACCTTAACACGTTGTGATGGGCGCATGTGTTCTGTCT GTGCTGTCATATACTTTTTGCCTTCTTGAATCCTGCATTGAGGAACTCTGAAGAGAATTTTGGTATTGCCATAATTGGAG TCACTAATGGTAGTGGAACAAATGGTATAACGTACTCTGTAATGGTAATAGTCCATAGTTAGATGAAGTATGAATGCATA AATGTAACTATAAAACTGTACAGTAGTCTATTACCAGATGTTATAGTGGAGTTTGATGGGAAAATAGAAATCTGTAACCT TTGCTTGTTGAATAAGATCTAACACTGTTGGCTCTATTCAATGAGTTCAAAGCTTAAAGATAGGAACTAGAAAAAAGAAA ACACAGATTCATTGGAAATTGAATGATTAGGGTAATTTATTAATAATAAGAAAAGCAGGCAAGATGAACAATCTCCACTG AGATGTTGCCAAGAACACAGCTCATTACAGAGAGATACTCTCCCTCACAAATGGCCATATCCACTCACTCCAAACCACAG GATACCCGCACACGGTAACTAACTCACCCACCACACTCCATGGACCCCACCCGCATAACAAACTTCCCACTTACAGCATG TGTCTTAGGACTCATTTGAGCCTCCTCTTGTAAATCTACAATATCTTAGGTCCTTATATCAATTGTTCAATGGGTTCAAG GCTTGGGTCCCGATCACTTATATAATTTATCTGTTTGTGTCTTTGAACCCTTTCCCTGTGCCTGTGGACTTCAGCATGGT GTCTGGACTCTGGATCCTGTATACTATACTGATTAACCACAGCACTGGATGAAGACAACAAAAATAGGCTTAAGAGGAGA ATGAAAAAAGAAGGCATTGTATTTGTATTGTACCCTTATCTTAACAATATTCATTTTTCTCTGCAGGCGGTTGATGTTAA ACTCCTTGGGTCCCTTAACAGAGATGATCTAAAGAAAATTTGTGGTGAAAATTTTCCTGAATGGATATCTTTTCCTGTAT ATGAGCAGGTGGGATTCTCATCTGTTACTGTAATACTTAGCTTTCTACTGAAATGATTTAACAAAACGCTCCAATTATTC CAGTATTATATTATTGGCAAGCCAAGTTAAAATTTGAAACTCCTTTTTTGTTTCCTAGTTCATATACTCTTTATGTTTTC TTTGAATGATCCTTCCTTGCATGGGTTTTTTCAGGTGAAATGGCTAAATAAGCTGCTGTCCAAACTATGGCCATTTGTGG CAGATGTGAGTAAACTTGCATGCATGTTTAATGTTTGTAGAATAATTATTAAACAACAGCAGCTTGTGTCATGTTGTTCA TTGATTTCTTACTAAATTTATTTTCTAGGTTAAATCTTGATATTTCACTTGTTTCTGTTCTGTAGTATTTTATTTTACAA AACATATTTTGTTCATAATATTGGTTCTAACCCCCCAGTTGTTCAGTTCGAATGAGAAAAAGAACAAACTGGATCTATTG ATTATGGAGAGATACTGAATTCAATATTCTTATTTGATAATCTAGTGTGGAATTTGGGGGAAGTTAGATGTATGAACTAT GAAGCCTTACCCCAAGTTGAGAGGCTATTTCTGTGACTAGATTCAGTGACCCCTAGTTCTGTATGTTCCCTGCATCATTC ACCTTGCTTTCCTTAGACATAAATCCTATTATGCTTAGGCTGTAGGAGACCTTTTTTTATTTGTTTTCCTTGCTAATATT CTTTTCCGAGGATTATTCCTACATTGCTTAAATAGCTGACTTATGTTCATATGGTTGTTTTTAATGTTTTAGGCAGCAAC TTTGGTGATAAGAGAATCTGTTGAACCGTTATTAGAAGAGTACAGACCTCCTGGAATTACTTCATTGAAGTTCAGTAAGC TGTCTCTCGGAACTGTCGCTCCGAAAGTTGAAGGTATTAATCAGCAGTAATTCCTCTCTTCTTCCTTTTTCCTGCTAGGT CATTATGGTATTGAGTGGTCTATATGTAGCCAACCCCACTTAGTGGGAATAAGGCTTTGATTGTTGTTGATGGTTGTTAT TCTTTCCCAGCCAAATTTACTACTGTATCAGATAATGAGGTTGATTGTTAGAGTAACCAAAGTGTGACTCAAAGAAGTCC CACATTGTATAAATAAACAACTGTACAATAGTATATAAGTTAAAGGACACACACACCCATTGCCTTAAGTGCCTTAAGGT TTTGTGGTGATATGGAATTATGGTTTTAACTTTATTCTAACATTTATTTATAACTGATATGTCATTCTATTTTGACAACA ATTCTTCTTTTAAGCTGCTTCATATGTGACTATTTTCAGAAACAGATCATCTAAATATCTCAATTTTTCATTTCTATATA TTTTTTCCCTTTCTTTGCCATTTAACTAATTATTCTCTGCCTTAAGAGAGAGAGAGGATCTTTATGCACTATGTTTTTCA TTTTTTCTCCTTTTTCTCTCCTTGCAACTATTTTCTTTTTTCGAAAGCAAAATCTATTGATATATTGATGAGGAAATTGA CAGGATATACATCGAACTACTTTTTAGAGAGGTTGTCCCTCTCTTAGGCCTTATTTATATTAGCAGATTAAACTTTCTTT GTGGCTTCTTATTGGTACTCCTCTAATGGATGTTTGAGGTGATTTTTTTACTGATATCCAAAGAGATTGGACAGTTTTAT TCATCTTTCAGCCACTTTGACTTATTGTTTCCCACCCTCTCTCTGCATTAAGATTTGTTATCTTCTGCCTAATGTACATG CTTCATTTTCTTTTATAATTATTTTCATTTTATTTCATTTTTCAAGTTTTGCGGAGGAGTCCATGTAAACATGTATCATG AACTAAAACCAATGCACAACTATATCTTAAAACTTCCAGCAGTTAAAATAAAAATCATCATCAATTGCAGTTAATAATAT AAAGAAACCTCAGTCTTCTCTGAAGAAACACCTTCCCACCATCAAATCTTATTTGCCCTCATTTTATACTTTCTTGCTCT AGCAAGCAGCTGGTAAGCACAAATCCATATCTTGATGTGTCAGAGCCAAGTTGAAAACTTGTTTGAGCAAACGAATTTTA TCTTTGTAGAAAATATCATTTTTATTTGCTATAGTTGCATTGGTGCATGAAATATGCTGGACCCAACACTTCATTCGTGA TGACTAGTGACTAGTGAGGGATTGTTAGCACGAAAATTTGAGATTTGCGAACTGTTTTTTAATTGACGTAAAGAATGGAG GCCAGGAATGACCAGTCTTATACTAGTGCTAAAATGTTCAGGGTGAGGTCCAAGGTCATGGCATGCTAGAAGCTTGAATT AGTGCTTAAACTGGTACTTACAACTGATCTACCTAACAAGGAGTCAAACCGAAATATTCATACCCAAAAGCAACACATAT TGTCCATAATCTCTTTTCAAAAACAGGGAAAGAAGCAACTATCGTGAGATTCAAGATTTAATATGTCTTGAATCGAAGTT AATTAGATGAAATGGATAAATCAACTTTGAAGTTTTTGCAGGTTTAGAATAAATCAAAATATTTAAGTTGTGTGTGCCAT ATGCAACATAAGCTTTATAACAATAATTTTATAAGTTAGAATCTACGTATATTGTATTTATGAAAAATGAGCACATAGTT GATGAGATTGTTATTAAGATGTTTGACTTATGCATGTTAGCAATATTCAGACCAAACAAAATGTTATCAAATGCAATTTT TATTCCACCTTTGTTTTTTCTTCCATTATCAATATCTCCGTCGAGTCATTTTTGTATATCAAGAAATAATGCATGCATAG TTTCTTCATCCATTCAGGTATTCGTGTTCAGAGTCTTAACAAAGGTCAAATCATAATGGACATTGATTTCCGTTGGGGTG GTGATCCCAATATTGTTTTGGGTGTTGAAGCAGCACTTGTTGCATCAATCCCTATTCAGGTTAGACTGAGCAGAATTATT CTATGTTGAATTTCATGTTCCTTTGCTAAATTTCTAAATCTTGAGTGTTATTGGTTTTTGCTTCAGTTGAAGGATCTCCA GGTTTTCAGCATTATCCGTGTTATATTCCAACTTGCTGAAGAGATCCCCTGCATTTCTGCTGTTGTTGTTGCCCTACTTG CAGAGGTAACCATTGAAGGGTGATGTTCTACTAAATTTCTTAATATTCATTTGCAGTTTCGTATGTGCAAACCCTTTTGC ATGCTCTTGCAAATCAAGCTAAAATCATTGGTAGACCATTGACCTTAAGCATGTTTCCACTTCATGATTGTGTGGCATTA GTTACTTTTTTTCTTTAAGAAGAAATTGACGTGAGAATTAAATTTGTTGGTTAAACAAACTGAAATTTTTGATAATTGAT CCCTTCACATCAAACTTATGTTCATCACATTTTAACTATTAG
CDS sequence (LotjaGi1g1v0465600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTTGTTTTTTGGGATTTTTCTGGGGGTAGTATTCGGCGTAGCATTGATGGCTGGTTGGGAGCGCATGATGAGGTA CCGGAGTGCCAAGCGAATTGCAAAGGCGGTTGATGTTAAACTCCTTGGGTCCCTTAACAGAGATGATCTAAAGAAAATTT GTGGTGAAAATTTTCCTGAATGGATATCTTTTCCTGTATATGAGCAGGTGAAATGGCTAAATAAGCTGCTGTCCAAACTA TGGCCATTTGTGGCAGATGCAGCAACTTTGGTGATAAGAGAATCTGTTGAACCGTTATTAGAAGAGTACAGACCTCCTGG AATTACTTCATTGAAGTTCAGTAAGCTGTCTCTCGGAACTGTCGCTCCGAAAGTTGAAGGTATTCGTGTTCAGAGTCTTA ACAAAGGTCAAATCATAATGGACATTGATTTCCGTTGGGGTGGTGATCCCAATATTGTTTTGGGTGTTGAAGCAGCACTT GTTGCATCAATCCCTATTCAGTTGAAGGATCTCCAGGTTTTCAGCATTATCCGTGTTATATTCCAACTTGCTGAAGAGAT CCCCTGCATTTCTGCTGTTGTTGTTGCCCTACTTGCAGAGTGTTCATCACATTTTAACTATTAG
Protein sequence (LotjaGi1g1v0465600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLFFGIFLGVVFGVALMAGWERMMRYRSAKRIAKAVDVKLLGSLNRDDLKKICGENFPEWISFPVYEQVKWLNKLLSKL WPFVADAATLVIRESVEPLLEEYRPPGITSLKFSKLSLGTVAPKVEGIRVQSLNKGQIIMDIDFRWGGDPNIVLGVEAAL VASIPIQLKDLQVFSIIRVIFQLAEEIPCISAVVVALLAECSSHFNY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 2 | 2 | - | – | |
Phobius | 1 | 18 | 18 | - | – | |
PANTHER | 1 | 205 | 205 | 6.3E-129 | – | |
PANTHER | 1 | 205 | 205 | 6.3E-129 | ||
Phobius | 3 | 13 | 11 | - | – | |
TMHMM | 4 | 21 | 18 | - | – | |
Phobius | 14 | 18 | 5 | - | – | |
Phobius | 19 | 207 | 189 | - | – | |
ProSiteProfiles | 66 | 207 | 142 | 19.207 | ||
Pfam | 68 | 200 | 133 | 2.6E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. |
Expression pattern of LotjaGi1g1v0465600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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