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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0469400 |
| Transcript ID | LotjaGi1g1v0469400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ring finger protein, putative; TAIR: AT1G72220.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8LFY8|ATL54_ARATH RING-H2 finger protein ATL54; TrEMBL-Plants: tr|C6TGF9|C6TGF9_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0469400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:98003497..98007254) extracted from Lotus japonicus Gifu genome v1.2.
CCAGAAAAAAGCAGAACCACTTTCCACCGTGAGATCTACATATATCATCATCCTCCAACATCTGATGAGGTGGACCCCAC CAACACGATTCCATTAGAGAGAGAGAGTGAAAGAAGAGTCTTTTTCTAATGCCCCCATCATCTTCAATCTCATCTTCCTT CACACCACAGCCACTGTGATCCCATCTCTTCATAATTCATCATTTTTCAACTCTTATCTCCCTTTTCTTCTCTTCTTCTG CTGCATAGTTAGTACTCATGAACTCAAAAACTTTCAATTTTTCTAACATGGGTACCCTCTGTTTCCTCTGTTTTCCTCTG TTTTCATCTTCTTCTTCTAACTCTCTGGACTTTTGACCAGCTGTTGGTGTGCCTGTTGAAGAATCTGGGAAGTGGGGTTA TTTTTTGGTGGTGTGTTTTGGTGTCTGCTTCTGTTCTCTGTGTCTCTAGCTTCAGGGGTTTGTTTGTTGTTGAGGGTTGG TTTTCGTGAAGATCGATGTTGGGTTCAGGTACCAATCTGGTGACCACGGTCATTGGATTTGGGATGAGTGCTACTTTCAT TGTGTTTGTCTGCACAAGAATAATCTGTGGAAGGCTACGAAGGGGTGCTGAATCTCGGATGATATATGAGTTTGAATCAA GATTTGATCTAGAACAGGTAATTTCAGCTCTTTTGCTGATGAACATAGCTTGATTTTTGGTATTTGCTAGATTTTTATGA AACTTTTATCAATACTATTATCTCAACTTTTTATAGATTATTGTAATGAACTTCTGATCCAATACTTGAAGTATATGTGC AATAAGGATATGTGGTTTTGAAATTTCTGACTCTGATGCAAATGCTGCATTCCATTTCCAAAAATAAATCTGCCTCAGAG CATGTTTTGAAATAATGGTATAGTTGATTATAAAGTCAAAATCAATTATGGAGAGAAGTTTCTCTAACCAGCTTCTGAGT GCTAGAATTGATTCTGACAAAATGGAAGTTGATCTAAACATTTAGCTATAAAATTCCAATCAGATGTAGAATAGGGTATT TCATGTTTTATATACTTCCCCTTGAACTGATTTGTCTTGGTACCCTGAATTAACAAGTTCTACATTATAATCCTCCTTTT AGTGAAGAGTTTCTCACATTCAATATACTCTTTGTTAATTTCAAGTTCATTAGCATGTTTCCTGAACCTTCAAGATTTTG GGTGGCCAGAAGAGGGATTTGACTCCTCGCAAGTGAGAGATTCAAGCGTAAAATAAGTCATGGCAGTATTTGATTGGAAA ATCAACGGTTGTTATTTTGATCACATACTTCCACATGTACAACACATTATGTTGTTCTTTAAATCTCAACTATTGATTTC TCAATCAACGGTTATCATAGCTTATTTTATATTCTAAAGTGAATCTCTCATTAAAAGAGTTAAATATCCCCATAAGAGTA GGGGCAAAACCAGGAAAAATAGGTTTCGGGCAAAAAATTCATATTAAGTAAAATTAATAATGGTTAATTAGGTAAAACAG TGCAAGAATTTTGCGGATGCTTATACAATATTTGAATACTATTATATTAAGAATTTTTTTTTCTGATTGCTCTCTTTTTA CTATAGCTAGTTCCATCCATGCACAAGAGAATATACTTTGTCTAATTTGTAATTCAGTTTATGTCATTGTGTAATTGATT AAGATTTAGATTTTAATTTTTCATTGTTTACTGATAGCCAGAACATCATGTTAATGACCATGATCCTGAACCTGTTTTGC TTGATGCAATCCCCACTTTGAAGTTCAACCAAGAGGCTTTCAGTTCAATTGAAGATACACAGTTAAGTCTAGTCTCTTAA TTGTAGGTGATAGAGATCAAGTTCCTCATATTTTCCTTGGTAGCAGATTTGAACTTTTTCATTGATGACTAATTCCATAA GTTTCTTATGACTAAACATTGTTATTCTACTTTGAGAAGTGCTAGCAACACTCACTTTAACACTCTTTTCGACATTCTCT CAGTTGAAATTCAGGTGAGACCTACTAAATTGAAAGTGTGACCCATATTTTTAGTGGACCCCACACGAATTTCAATCAAT CAATGAGAGAGATAGAGAGTATTGAAAAGAGTGTTAAAGTGAGTGTTGCTAACATTTTCCTTTTACTTTTGTTACATGAA TACTCTACATAATTTGTGCTGACTTAGTTAGTTAGTTGATGAAGTTATTATTCTGTTTTTGGTGTCTATTACCAAACTAC CTTTGTGTATATATTACAATGTATCAATGAAGATTACTTTTTCCCTTTTACCATTTCTACATGGTATCATTGCCATCTAC ATGATATTTGACTCAGCTTGCGCGGGTGTGTTAGATAACAATGTAGATAATTTTGTAGTGACTTAGTTAGAAGGGGAGCC TTTGAGCAATGATAAAAAGTTGTTATCATGTGACAAAGGTCACTTCAAGTCCTGGTAATAGCCTCTTGCCTTAAAACAGA ATAAGTTTGCGTATAATAGACCAAGTTGTTGTCATACCCTACCCCGGACCCATGCACTTGTGCACCGGCCTGGCCTTTTC TTAGTTAGTTGGTTAGTTGATGAAGTTGTTATTCTGTTTTTTGTAACCTTTGTGTATTACAATGTAATTATCAATGAAGA TTACTTTTTCCCTTTTATCATTTCTTCAACAAGAACTCATGAATCATGATATCCAGCAAGTACTTGATATATTGATAACC TCATCATGCAAAAAGGAAACAATGCATAGATAAATAACTCAATTTGCTTCTACAGGTGTGTAATATGTTTGGCAGATTAC AAAGAAAGAGAAGTATTGCGCATCATGCCGAAATGCGGTCACACTTTCCATCTTTCTTGCATTGATATATGGCTGAGAAA ACAATCTACTTGTCCGGTATGCCGTCTTCCATTGAAAAACTCTTCTGAAACAAAACATGTGAGACCTGTAACATTTACTA CTACCATGAGCCAATCTCATGATGAGTCTCATACATCAGAAAGGAATGAAGATGTTGAGAGGCGTGTTGAACCTACTGCT AGCAACTCCTTACAACCAACCTCTGCAGAACCAGAAGCAAGGCAATGACCTTAGAGGGCTAAAAAGGTTGTTCTGCTCAA AAAGAGAGTAGTGTGTACATTTTCTGCTTCTCCAGAGGAATGCTTCTGATTAGATTGGGTTCAAATTCTTTGTCTGCGTT ATGGCCTTCATATATTCACTTGGTGGTGCAAAACGGATCAGGATCCTCTCTTGACAGTGCCGTGAAACATTGTGTCAGTC TCTCTCTCTTCATAAATATTCAGAGGGTCTCACCTTATGAAGAGTGTTAGACACATAGTTTCAACATGACAGTTGACAGT GTCATGTGAAGTTTCCACATGAAAGGATCCCGATCGGGTGTAGACATACCTGAGTCATGTACATAATTTGTCTCATTATG TAGAATATGCAGGCCAGCCAGGCCTAGGCCTAGATTTTGATGAAATTTCATGCACGCCAAGTTAGATCTACTCTAGCAAG ACACTATTACTCTTGTTTATGCATAACAGATTAAACAGATATTTAATGACATGTATTGGCTCTTGTACAATTAATTTTTA GTTGCAACTTTCTTCTAAATAATGCTCCTTGTCATATGACGGATCTATAAATTCTTTATATTGGGCTAGGGTTTATCAAA TGCAAGAAATTTATTTGCAATCAAAAATTATGTTTGGATACTGGTTGATACTTGACACTAATGACACCAACGACGAAC
CDS sequence (LotjaGi1g1v0469400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGGTTCAGGTACCAATCTGGTGACCACGGTCATTGGATTTGGGATGAGTGCTACTTTCATTGTGTTTGTCTGCAC AAGAATAATCTGTGGAAGGCTACGAAGGGGTGCTGAATCTCGGATGATATATGAGTTTGAATCAAGATTTGATCTAGAAC AGCCAGAACATCATGTTAATGACCATGATCCTGAACCTGTTTTGCTTGATGCAATCCCCACTTTGAAGTTCAACCAAGAG GCTTTCAGTTCAATTGAAGATACACAGTGTGTAATATGTTTGGCAGATTACAAAGAAAGAGAAGTATTGCGCATCATGCC GAAATGCGGTCACACTTTCCATCTTTCTTGCATTGATATATGGCTGAGAAAACAATCTACTTGTCCGGTATGCCGTCTTC CATTGAAAAACTCTTCTGAAACAAAACATGTGAGACCTGTAACATTTACTACTACCATGAGCCAATCTCATGATGAGTCT CATACATCAGAAAGGAATGAAGATGTTGAGAGGCGTGTTGAACCTACTGCTAGCAACTCCTTACAACCAACCTCTGCAGA ACCAGAAGCAAGGCAATGA
Protein sequence (LotjaGi1g1v0469400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGSGTNLVTTVIGFGMSATFIVFVCTRIICGRLRRGAESRMIYEFESRFDLEQPEHHVNDHDPEPVLLDAIPTLKFNQE AFSSIEDTQCVICLADYKEREVLRIMPKCGHTFHLSCIDIWLRKQSTCPVCRLPLKNSSETKHVRPVTFTTTMSQSHDES HTSERNEDVERRVEPTASNSLQPTSAEPEARQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 1 | 188 | 188 | 1.7E-84 | – | |
| PANTHER | 1 | 188 | 188 | 1.7E-84 | – | |
| TMHMM | 10 | 32 | 23 | - | – | |
| Phobius | 12 | 31 | 20 | - | – | |
| Phobius | 32 | 192 | 161 | - | – | |
| Gene3D | 67 | 142 | 76 | 6.3E-22 | ||
| SUPERFAMILY | 80 | 138 | 59 | 9.84E-22 | – | |
| CDD | 89 | 132 | 44 | 4.56847E-17 | – | |
| Pfam | 89 | 132 | 44 | 3.7E-14 | ||
| ProSiteProfiles | 90 | 132 | 43 | 12.991 | ||
| SMART | 90 | 131 | 42 | 2.9E-8 | ||
| MobiDBLite | 144 | 192 | 49 | - | – | |
| MobiDBLite | 158 | 174 | 17 | - | – | |
| MobiDBLite | 175 | 192 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0469400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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