Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0470100 |
| Transcript ID | LotjaGi1g1v0470100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SPX and EXS domain-containing protein 1; TAIR: AT5G35730.1 EXS (ERD1/XPR1/SYG1) family protein; Swiss-Prot: sp|Q55B06|SPXS1_DICDI SPX and EXS domain-containing protein 1; TrEMBL-Plants: tr|V7B265|V7B265_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0470100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:98058426..98064845) extracted from Lotus japonicus Gifu genome v1.2.
ATCTGTTATTTTATAAAACCTAGTGTTTATGAACCTCTGCCTATTATTATGTTTTTTCCAGGTGACACTCTTTCTGATAT GGGGCTGTACTTGCTGCAAGGTCAAAGCCTGTCCTTTCTCTATTATAACATTTATGATTTTCCAGGGGTAGCAATGAATG TCACTTGATAAATCGCTTATAATTTCTTTACCTATTTCCACACGTAATACTCACCTTTCCTTCTCTTAATCAGATTGGTT GGGATTCTGTCATGAGAATGGATGCAAATCTGCGAGATCTGTTTTTGTATGAGGCATTTTTGTATTACAACCCTCTTCTT CTTATGGTGCGTTAGGGGTTATTTCTTCTGTTTATGTCATACATTGAAGACAATTTTTGTGAAACCTTGCCTGATGGTTT GTTGATACCGTTTACAGACTATGATGGTCTGGCTTTGGGGAGTGAATTTGTGGGTATTTCTACAATCCAATGTAAGCTAT ACCAAGATTTTCGATCTTGATCAAAATCACCTTACTCATAACGAGATATGGAAGGTAGTCAACTTCTTTGCCTTCCTCTT TCAGAAAACTAATTTCAATACCAAGTGGAAAGTTGTTTGTTGCTTTTCTTGATTCTCGATTTTGACTATTAATATTTCAA CCATGAAGTTGTGGTGCGTATCTAGTTGTTTGAAACATACCGATAATCAAATTAATAAATGCCCATGTACTAAAAAAAAA TTATGCCTTTGTATGGGTTGTCAACAGCCGAGAAAATTTTAAAACTAAGAATTTGTAAAGGGACAGTTGGCGGTTAGCCA AAGTTAGAGGGGGCGTCGTGTCCAGGCTTACACTTGAATATGGACTAAATGGCAGTGATTGTCTGCATTACAAATCAAGA ATATTCAATCAACATTGTAATCACACTATAATTATCCATCAACATACCTAAAACATATCAGCAATCAACTATCTGCCACA TCAACATTTCTCATGTACATCTTGGTAACATTTGGATGGAAAAGCCTCCCGCAAATACCTTTTAGTAATGACATCTGCAA GTTATCTTCTTATTTTACTGAGGATGTGCAATGTATTCTTCAGTTTCTCTATGATAAATGCATGTTAATCTATATTTGCT TCATTCTATGACGTTACACAGATTGTAAGATAGAGATGTAGTCTAAACGCCAATCCTTGTTCTTACATCAACTTCAAACT TTTTTATTTGACAGAGCGTCTAGAGGTTGTGTCAATAGCATGGTTTGATGATGCTACTACTATAAACTCATTATGTATGT TTATATATTAACTTCAACTAGTGTGTTATTTTCAGTGTAGCACTTGGATGACAATCATTGTCCCTACTAGCATGACTGCT TATCTCTATCTCTATTCCCATGGGGAAGTAAAGTTGGCTGCATCTCAACCAGTTTAGTATCTACTCTGTTCTTTCCTTCT AGCTTTCTTTAACCAGTTGAATTTGACTTCTTCCTTAAACTTGACAATCATTGAATTGTTTTTTGTATACATTTTGTTTT TTTGATTACATGATATGTGATGTAATTTTCTTTCTTTGTATTGTTGCTTGGGACTTCTTAGTTATGCTTTCATGTAGATG CTGATGTCTTAATTTTTTTTCATAAAATAATTCTTCCTGTGTGCCAGCAAATGACTTGCTTCCTGTGATCGTTCCTATAA TAATCTTTTTGTCTACCTATATTCTGATAATCTAATATACATATTGCAGGTACTTCTCTACATTTGTGTCTCAGTAATCT TGATCTTTCCCTTTGATATTTTCTATTTGTCCTCTCGGTACTTCTTTTTGAGGACATTATTGCGGATAGCTTTCCCTTTG CAGGCAAGCTTCTTGACTATCATGCCAGATATGGACTTTTGAGTTTATCTGGATTTGGTTCCTTTTGTAAAGCACCTGAA ACATCCAATAAGTTATTTTAGTTTGTTGATGTGAAGCTACTAATCTATTGCTAATAGTTTGGTTCAAAGGTTTTGAATAG TTTCTATGAGTTTGTTAGTTATTTTCTCATCAATGATAAAGCTTATCATTTGCCTCACAAATAACAGTTCTTTTCTTCAT GCAGCCAATTACATTCCCTGACTTTTTTGTGGCTGATATTTTAACCTCCATGGCAAAGGTACTACATAGCCTAATAGTAC ATTTCTTGGTGCAATTTTCTATATACTTCATAAATGTGAATATCTAAGTGCTTAGAAATTTGTATATTTAGATTGTCACC TTACTACTGCTTTTGATGGTCTTTTTTGGGGGAAAACCCTCGTTGTTGTGATCTTTCTTGATTTTTTTGTCTTAATAATC AATTCCTGCTTCCTATTAGAGCAGCCAAAGGAGGAAATTAGTGAGGAAGTTAGTAGTTAGTTTAAAATGGCTTGAAAGGA AGTTATGATAGCTCAGGTGGTTAGTATGTTAGTTAATGAGGTGTAATAATAGTATGCTATCAGAAGTATGATAAGATGTA TGCACCCTAGCTAATTGCTGTATAAGTACCAGTTCCATTGTATACTCAAATCTGTTCAGTAAGAATATCAATTCTCTTCT CTTCATTTGTTCTTTCAATGTTGATGAGTTTTGTTCTCTGGTATTTCTAGTTATGGCTCCTAACTGTTCATTGCATACAG GTTTTTTCAGATTTGGAGCGTTCCGTTTGTAGAATGGTAAACAGACAGGTATTGCTTAAATCAAAGATATCAAAATTTCT TTCTTTTTATTGCTAGTAACTTGTCAACATACCTAAAATGTACTCGTATGTTTGCAGAATTTTATTAGTTAAACACAGAT CATTTGATCATTTTTAAACATTTAAGTAAAAACTTTATACAGCTATTTTGTATTTGCACTTTTTTTTTCATTGTTCTTTC TTTACGTTTATTTTCTACTACTTTGCATTTAGAACTCTGACGTAGTTGGTGCTAAGCTGGGCAATACATGGTTGTTTCAT CAAAACTATTTTTACTGTACTACGTCATCTTTTGCCTGCGTAGATTTATGTAGTTCCTTCCATATTTTTTCTATGGGGAC ATGAACGAAATATTTATCTTTTTATGATATGCAGGTTGCCACAATTGCTTGGCTTGAAGCTGACTCTGTTTGTGGTAGTC ACTCAGTTGCGATACCAATGGTTCTTGTTCTTCCTTATATATGGCGTTTATTGCAATGTCTTCGTCAATACAAAGACACC AGAGAAAAAAATTGTCTCTTCAATGGTAATTGCCTTCGCTCTCCTAAAATTTTGGGATGGAAATAGGTTGGGTTACTCAT CAGAGTCTATAACTTAGCCTACATTAGGCCTAGACCAGGCTACAAAACTCTTCAAAACTCTATTTACCAAAATAATGTCA GTGTTTGGGTCATCTAAAAAGCTTATTAGGCCTATCAGGTCGTCCTATTAATTAAAATTATAATATTTTTATACTGTTAT TATCATTATATCAGATTTTTATTAAAATGTATTGAAATTATATATTTATTGGTCAATGTAAAGATTTAATCAGGTTGACC TACTCAAAGATCTAAGTCTAAACGCCTGTTAGAAGTAGAGATGCAACCTATTTATAGATAGATTTTATTGTCTGTTTAAA TATCTTATTAAAATATAGGTTTTCGAACATACTTTCGGTTACACTAGACTTTTAAAATGTTCAGGCCAGGCCTTTAGAAT GACCTACATTAGGCATAGGTTAATAAGTTAGACTTAAGACCTTAAGTTTGAGAAGTAGGTCATTTTAGACCTTGAGAACT GCAGCCGAGTTTTGCCTATTTCCACTCCTACTTAAATTTTGTGACATGTCCTGGTTGAGTAGTTGTTGTCCACTTGGTTA TTGAACAAATTGTAACTATGCTTGGTTATATGCTCTATAATGACTTAAAGCTTTTTTATCAAAGCTGGAGTTAGGCTTTC CCTAGCTTCTAAATCCTATATCTCTTTTGTGGACGATTAGTTCATTGTGTTCATTTTGATAAATCTTAGTTCCTATTTGA TTTATTGCTTTAAATCTATCCACTTGGTTCTTAAGGGTGGAACCAGAAAAAATAGGTATGGGGCGAAAATTTAACACATT AAGCAAAGTTAAAAATGACTAACCGGAAAATACAGTATGAAAATTTTAAGGGGGCGAATACAACATTTGTATATCATGAA GATTTTTTTTTTCGACCGCCCCATTTGGGAACCAAGTGGTTCTGTCCCTGTTGGTTCTTGATAATTGATATGTTCTTATA CAGTTCTGAGTTCTGTTCTGTCATTTTTGCTGGCTGTCATATGGCTTGAGGCAATATTCTTTTGCCTGCAGAACTAGCGT ATTTTTCTGAGTCAGCCAGCTAACTCATACATATCAACTGCGAACTTGTTAATGCATAGGGGCTTACAATCAAATACCAA TCCTGCATACTAGTTACAGTTAGGGACCAAGTAACCACTGAAGCATATTCTAGATTGGTCCTCAAGGACTTGTTTGGCAT GCTGTATTAGATTTGATATTTAAGTTTACAGAGTAGATGACGACTTAGTTGTTTGGTGCAAATGCATATTCATTCATCTA TTTTAAGTAATAATTGATTTGAATTTTTTAAATGCATATCAATTTAAAATTATTAAATTTTTATAATATCCATATACAGA TCCGATCCTTTTTCCTTCCTCTTTTAATTGAATATACATAGTTGCTATGAGTTTTTATTTGGATTTATGGATTTTCTCTC CAAAGATATGTATAACACAACAAATTTGTGTAAATAACATATATTTTAAATAAAATTCATTTTGTAAAATTTATCAAATT TTATACAACCATGCCCTGTGTATCACTACTACCATGAGTACTATCAGAAATTATCTTATCATGTGTATCAAACAGGCCTT GTGTAAGTTTTCCTTTAAGATGCTCAAAACTACTTGTGCATTGATGTCTATTGTTGCAAGCACTCCATAACATCTAAGGA TGTGTTTGTGAGTTGAGTTTTGGAGTGGAGGGAAGGGAAGGGGGAGGTTTATGAGAAGCCTTCCCCATGTTTGGGAAATT TTAAAAGGGGGGAGGGGGAGGGTTAGGAGTATTTCTAAAAACCCTCCAAGACCCCTCAAAAACCCTCTTGTAGTTATATT TTGTAGTTTCCTCCAAATTGGGGGGTTTTGGGGGAATCTGGAACTTCTAAACAATGGAAGGGCTTACCCTCCTTCCCCTC TCCTACTCTCTCCTAAAAACTCCCAAACAAATCCTAAGGCACCTTAGCCTTTTATTTTTCTTTTTTCTTTTCTTATTTAA ACTAATGGTTTTGATAATTACTCCTAGTGTTCTAACTCTACTTGCTCTTGTTTTCCAGCTTTAAAATATTCGACTGCAGT CCCCGTAATTTTTCTTTCAGCCCTTAAATATCATGTCTTCCCTGAGAAATGGACAACGCTTTATCGGCCACTGTGGCTTC TTTCAAGTGTCATTAATTCACTCTATTCATTTTACTGGGATATTACAAGAGATTGGGATTTAAGGTACCGCACCTATCAT CTTTCCCTTTCAGGTTTATTGTAGCATACCTTCCCATTTGCATAGATACAAGTAACGATTACATCTATAAAATGAGTGAG TAGTCACTTAGCTCCTTAAAGATATAGGGTCAATCAGTTTTGTCCCCCTACTAAGAAAATAGGCAAAATGGTCCCGAAAT ATGAAAACATTTCCTATATAGGCCTTCCCGAGACTAAAGTGGATCACCTTTTTAATCTTTCAAGGATTACATTGATCCTT ATTTCCATCTTTTAAGGACTAAATTAACTGTTTTCCATCTTTCAGGAATTATTCTCTATTTCCGTCTTCCATGCACTAAG TTGACCGACCCCTTATCCTTTGAAGAGCAAAGTGACTATTCTCTCCTAAAAATTTGATAAGTTTAAATCTTATGACAAAA AAATAAAGAAACAACTTGACATGCACATGGGTTGAGATGCTAGTTTTGTGGTACACTTGACTTTACTTTAAATGATGAGT ATTCACCCTGATTTTGCTTCTTACAGTGGCTTTTCCCGCATATTCAAGTTCAACAAACCAAGTCTAGTTTCCAACCTGTT TCATGGACGACAATGGGTAAGAAGCTGATGCATCTTATTGCAACATAAACATATTCCCTTTGATTTGACAAATCTAACTT CTGAGTTTCAGATATACTTTTGGGCAATCGGAAGCAACTTTATTCTGCGCTGTTCATGGACGTACAAATTATCTGCGCAT CTCCGTCATAACTACCTGACAGTGTTCGCGATCACTCTAATGGAGATGCTACGGCGCTTCCAGTGGGTTTTTTTTAGAGT TGAAAATGAGTGGAACAAGATTACCCGGTCCGGTGTTCAACTCACAGAAATTCCAAGAGAGGAGGAGAAATTGCTAGGGT CCAACAATCATGATGTATAG
CDS sequence (LotjaGi1g1v0470100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACCTCTGCCTATTATTATGTTTTTTCCAGGTGACACTCTTTCTGATATGGGGCTGTACTTGCTGCAAGATTGGTTG GGATTCTGTCATGAGAATGGATGCAAATCTGCGAGATCTGTTTTTGTATGAGGCATTTTTGTATTACAACCCTCTTCTTC TTATGACTATGATGGTCTGGCTTTGGGGAGTGAATTTGTGGGTATTTCTACAATCCAATGTAAGCTATACCAAGATTTTC GATCTTGATCAAAATCACCTTACTCATAACGAGATATGGAAGTGTAGCACTTGGATGACAATCATTGTCCCTACTAGCAT GACTGCTTATCTCTATCTCTATTCCCATGGGGAAGTAAAGTTGGCTGCATCTCAACCAGTACTTCTCTACATTTGTGTCT CAGTAATCTTGATCTTTCCCTTTGATATTTTCTATTTGTCCTCTCGGTACTTCTTTTTGAGGACATTATTGCGGATAGCT TTCCCTTTGCAGCCAATTACATTCCCTGACTTTTTTGTGGCTGATATTTTAACCTCCATGGCAAAGGTTTTTTCAGATTT GGAGCGTTCCGTTTGTAGAATGGTAAACAGACAGGTTGCCACAATTGCTTGGCTTGAAGCTGACTCTGTTTGTGGTAGTC ACTCAGTTGCGATACCAATGGTTCTTGTTCTTCCTTATATATGGCGTTTATTGCAATGTCTTCGTCAATACAAAGACACC AGAGAAAAAAATTGTCTCTTCAATGCTTTAAAATATTCGACTGCAGTCCCCGTAATTTTTCTTTCAGCCCTTAAATATCA TGTCTTCCCTGAGAAATGGACAACGCTTTATCGGCCACTGTGGCTTCTTTCAAGTGTCATTAATTCACTCTATTCATTTT ACTGGGATATTACAAGAGATTGGGATTTAAGTGGCTTTTCCCGCATATTCAAGTTCAACAAACCAAGTCTAGTTTCCAAC CTGTTTCATGGACGACAATGGATATACTTTTGGGCAATCGGAAGCAACTTTATTCTGCGCTGTTCATGGACGTACAAATT ATCTGCGCATCTCCGTCATAACTACCTGACAGTGTTCGCGATCACTCTAATGGAGATGCTACGGCGCTTCCAGTGGGTTT TTTTTAGAGTTGAAAATGAGTGGAACAAGATTACCCGGTCCGGTGTTCAACTCACAGAAATTCCAAGAGAGGAGGAGAAA TTGCTAGGGTCCAACAATCATGATGTATAG
Protein sequence (LotjaGi1g1v0470100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNLCLLLCFFQVTLFLIWGCTCCKIGWDSVMRMDANLRDLFLYEAFLYYNPLLLMTMMVWLWGVNLWVFLQSNVSYTKIF DLDQNHLTHNEIWKCSTWMTIIVPTSMTAYLYLYSHGEVKLAASQPVLLYICVSVILIFPFDIFYLSSRYFFLRTLLRIA FPLQPITFPDFFVADILTSMAKVFSDLERSVCRMVNRQVATIAWLEADSVCGSHSVAIPMVLVLPYIWRLLQCLRQYKDT REKNCLFNALKYSTAVPVIFLSALKYHVFPEKWTTLYRPLWLLSSVINSLYSFYWDITRDWDLSGFSRIFKFNKPSLVSN LFHGRQWIYFWAIGSNFILRCSWTYKLSAHLRHNYLTVFAITLMEMLRRFQWVFFRVENEWNKITRSGVQLTEIPREEEK LLGSNNHDV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 3 | 17 | 15 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| PANTHER | 7 | 409 | 403 | 6.4E-259 | – | |
| PANTHER | 7 | 409 | 403 | 6.4E-259 | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 45 | 23 | - | – | |
| TMHMM | 40 | 62 | 23 | - | – | |
| Pfam | 46 | 381 | 336 | 6.5E-100 | ||
| Phobius | 46 | 70 | 25 | - | – | |
| Phobius | 71 | 90 | 20 | - | – | |
| Phobius | 91 | 115 | 25 | - | – | |
| TMHMM | 97 | 114 | 18 | - | – | |
| Phobius | 116 | 126 | 11 | - | – | |
| Phobius | 127 | 147 | 21 | - | – | |
| TMHMM | 127 | 146 | 20 | - | – | |
| Phobius | 148 | 158 | 11 | - | – | |
| Phobius | 159 | 181 | 23 | - | – | |
| Phobius | 182 | 200 | 19 | - | – | |
| Phobius | 201 | 228 | 28 | - | – | |
| ProSiteProfiles | 209 | 408 | 200 | 21.153 | ||
| Phobius | 229 | 248 | 20 | - | – | |
| Phobius | 249 | 268 | 20 | - | – | |
| Phobius | 269 | 279 | 11 | - | – | |
| Phobius | 280 | 297 | 18 | - | – | |
| Phobius | 298 | 409 | 112 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0470100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…