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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0472700 |
| Transcript ID | LotjaGi1g1v0472700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT2G22410.1 SLOW GROWTH 1; Swiss-Prot: sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial; TrEMBL-Plants: tr|A0A0R0IDM7|A0A0R0IDM7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0472700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:98330800..98333725) extracted from Lotus japonicus Gifu genome v1.2.
CCACAACATGACATCTCACATCATCGTTGAATTACAAACGATAAACCCTATAGTTCTATGCTACTAATATTCATGGATAG CTTGTAACAAGGGCAATGTTCTGCTTGAATGATCGAAACATGAAACTATCCAAACCCATGACGCGCACCTTCAATGCGTT TCTTCACACAGACCCTTCTTCCTCTTCCTCCATTTTCCACCACCTCAAACCCCTCGCACTCTCCCCTACAAACATCCACA AAGCCCAGAACATCTTCAACCAAATCCACCAACCCACCTTGCCCCTCTGGAACCTCATGATCCGCGGTTGGTCCCAAAGC GACAACCCCATCGAATCCCTTCGCACCTACAACCTCATGTTCCACCAAGGCCTGGTTGGTGACAGCCACACCTACCCATC TCTACTCAAAGCCTGTGCTCGAGTTTCTGATGTTTCCTTCACTGCAATGGCCCATGCCCGTGTTTTGAAACTTGGGTTTG ACTCCCTTTTATTTGTAACTAATGCTTTGATTAATGCCTATGGTTGTTGCGGTGAAATGGGTCTTGCCCGGATGGTGTTT GATGAAATGCCTGAACGGGATTTGGTCTCTTGGAATTCGTTGATTTGTGGGTATCGTCAGGGGAAAAAGTTTAGGGAGGT TTTGGGTGTTTTTGAAGCGATGCGGGCGGCTGGTGTGAAGGCTGATGCTGTGACATTGGTGAAGGTTGGTATGGCTTGCT CTGTTTTGGGTGAGTGGGGTGTTGCTGATGCCATGGTTGAGTACATTGAGGAAAATGAGGTGGATATTGACGTTTACCTT GGGAATACGCTGATTGACATGTATGGGCGGCGTGGGATGGTTGATCTAGCTCGAGGAGTGTTTGATAGGATGCATGACAG CAATTTGGTTTCTTGGAATGCCATGATCATGGGTTATGGGAAAGCTGGGAACTTGGTTGCTGCTCATGAGCTGTTCGATG CTATGCCACAGAGGGATGTGATCTCATGGACTAATTTGATCACAAGTTACTCTCAAGCAGGCCGTTTTTCAGAGGCAGTG AGGCTTTTTAAAGAAATGATGAAGGCTAAGGTGAAGCCAGATGAAAAAACCGTTGCCAGCGTGCTCTCTGCGTGTGCTCA TATTGGTTCGCTTGATGTTGGGGAGGCTGTTCATAACTATATAAGGAAATATGATGTGAAAGCTGATATTTATGTTGGAA ATGCCTTGATAGATATGTATTGCAAGTGTGGTGTGGTTGAGAAAGCATTGGAGGTGTTTAAAGAGATGAGGAAGAAGGAC TCTGTGTCATGGACTTCAGTGATTGCAGGCCTTGCTGTGAATGGTTTTGCAGATTCCGCACTTGATTATTTTTCACAGAT GTTGAGGGAAGGTGTTAGGCCATCTCATGGAGCCTTTGTTGGAATTTTGCTGGCTTGTGCTCATGCTGGATTGATTGATA AGGGGTTGGAATATTTTGAAAGTATGGAAAAGGTTTATGGACTGACTCCGGAAATGAAACATTATGGATGTGTTGTGGAT CTTTTGAGTCGCTCTGGCAATTTACAGAAGGCATATGTGTTCATCACTAAGATGCCTGTGCCTCCAGATGTTGTTGTGTG GAGGATATTGCTAAGCGCCTGTCAGCTTCATGGAAATATACCCTTGGCTGAGCTTGCCACAACCAAGCTTCTTGAACTGG ATCCTTCTAATAGCTGTAACTATGTGCTCTCCTCTAATACTTATGCGGGGTCCAATAGATGGGAAGATGTTATTAAAATG AGAGGACTAATGGAGGAGAGTAATGTACAGAAACCATCAGGTAGCAGTTCCATAGAAATAAATGGTTCAACTTCAAACAG TGTAAAATGACTGTTATATAGAATAATTCATTGCTGTATAAATTGATTTCGGCTGTGGAACAGCATGGTTTATGGAAGGG AGATAAACCAAGGGCCTGAAAATTTGAACCTGACCCTGATGGCCTTATCGACTTTGATTCGTCACAAGTGACTTATCTCT AAATCATATAAGTTTCCATCGAGCAATATTTTTGACGCGGAACTAGTAGAGTAGAGTTGTTTATTGTGGATTCCAGATCG GGTTGGTAAACAGGAAAAGGCTTGGTGTTGTCTGAATTGCCTTTATGTTTTGTGCTGAAACTGGATTGATCAGTGGCTAG ACAAGATTGCAAACCATGTCTCAGCTATAAGCGTAAGTGACTGCTGCAGTCGCACCCATCCGCTAAATTCGATGTATATA TTATTTATGTATTTATCGTTCTGTTTTTTTACTGGGACAGAAAACTGAGGCAACCATCCGCTAATCAATGATAAGTATGC AAAAGGAATGAGCGGAAGTGAGTGTAGCAGAAGGAATGCCTATACGTTTTGGATGGTCAGCCATGGGAGAAGCACGATGA GGCACATTCTTGCACGTGGATTTCAAATGTTTGATTTATTTTCTATTATTGCAATTCTAACCCTTTTGCACATTCTGGAG ATATTTGATAGTTCAAGGACTCCAATTTCAGACCAGAAGCTATAACCATTCCACATAAAATGGTGATCTTCTTTTCTTTT TTCAATTCAACAAGTTGTTTTTAAATAGCTTCGTTACTGCAATATTTGTTTTCATTTTACCCTGTTCATAGTCCTTGAAA TTCATTGATTGTCTCCCGAATCTGGTTTGCAGTTTGTGCAGTAAAGGTTGTGAGTGATGTCTTAAATTTGTTGGCTACAT GAATTGTAAGCCATCTGCAATACCCAACCTTTGTAGTTTTCTTTTTCATATTAAGTTGATGGGCTAGACGATTCTGTTGT CATGTTTCTCCACTTGATGTACTTAACTTAAAAAGCATTGCCTGATACAACTGATTCAATAAATGGTTCAGATATTTTCA ATGTCGTTGGATTCATATGACAATTTTCAACTGCTTTTTCCTTTAT
CDS sequence (LotjaGi1g1v0472700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCTGCTTGAATGATCGAAACATGAAACTATCCAAACCCATGACGCGCACCTTCAATGCGTTTCTTCACACAGACCC TTCTTCCTCTTCCTCCATTTTCCACCACCTCAAACCCCTCGCACTCTCCCCTACAAACATCCACAAAGCCCAGAACATCT TCAACCAAATCCACCAACCCACCTTGCCCCTCTGGAACCTCATGATCCGCGGTTGGTCCCAAAGCGACAACCCCATCGAA TCCCTTCGCACCTACAACCTCATGTTCCACCAAGGCCTGGTTGGTGACAGCCACACCTACCCATCTCTACTCAAAGCCTG TGCTCGAGTTTCTGATGTTTCCTTCACTGCAATGGCCCATGCCCGTGTTTTGAAACTTGGGTTTGACTCCCTTTTATTTG TAACTAATGCTTTGATTAATGCCTATGGTTGTTGCGGTGAAATGGGTCTTGCCCGGATGGTGTTTGATGAAATGCCTGAA CGGGATTTGGTCTCTTGGAATTCGTTGATTTGTGGGTATCGTCAGGGGAAAAAGTTTAGGGAGGTTTTGGGTGTTTTTGA AGCGATGCGGGCGGCTGGTGTGAAGGCTGATGCTGTGACATTGGTGAAGGTTGGTATGGCTTGCTCTGTTTTGGGTGAGT GGGGTGTTGCTGATGCCATGGTTGAGTACATTGAGGAAAATGAGGTGGATATTGACGTTTACCTTGGGAATACGCTGATT GACATGTATGGGCGGCGTGGGATGGTTGATCTAGCTCGAGGAGTGTTTGATAGGATGCATGACAGCAATTTGGTTTCTTG GAATGCCATGATCATGGGTTATGGGAAAGCTGGGAACTTGGTTGCTGCTCATGAGCTGTTCGATGCTATGCCACAGAGGG ATGTGATCTCATGGACTAATTTGATCACAAGTTACTCTCAAGCAGGCCGTTTTTCAGAGGCAGTGAGGCTTTTTAAAGAA ATGATGAAGGCTAAGGTGAAGCCAGATGAAAAAACCGTTGCCAGCGTGCTCTCTGCGTGTGCTCATATTGGTTCGCTTGA TGTTGGGGAGGCTGTTCATAACTATATAAGGAAATATGATGTGAAAGCTGATATTTATGTTGGAAATGCCTTGATAGATA TGTATTGCAAGTGTGGTGTGGTTGAGAAAGCATTGGAGGTGTTTAAAGAGATGAGGAAGAAGGACTCTGTGTCATGGACT TCAGTGATTGCAGGCCTTGCTGTGAATGGTTTTGCAGATTCCGCACTTGATTATTTTTCACAGATGTTGAGGGAAGGTGT TAGGCCATCTCATGGAGCCTTTGTTGGAATTTTGCTGGCTTGTGCTCATGCTGGATTGATTGATAAGGGGTTGGAATATT TTGAAAGTATGGAAAAGGTTTATGGACTGACTCCGGAAATGAAACATTATGGATGTGTTGTGGATCTTTTGAGTCGCTCT GGCAATTTACAGAAGGCATATGTGTTCATCACTAAGATGCCTGTGCCTCCAGATGTTGTTGTGTGGAGGATATTGCTAAG CGCCTGTCAGCTTCATGGAAATATACCCTTGGCTGAGCTTGCCACAACCAAGCTTCTTGAACTGGATCCTTCTAATAGCT GTAACTATGTGCTCTCCTCTAATACTTATGCGGGGTCCAATAGATGGGAAGATGTTATTAAAATGAGAGGACTAATGGAG GAGAGTAATGTACAGAAACCATCAGGTAGCAGTTCCATAGAAATAAATGGTTCAACTTCAAACAGTGTAAAATGA
Protein sequence (LotjaGi1g1v0472700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFCLNDRNMKLSKPMTRTFNAFLHTDPSSSSSIFHHLKPLALSPTNIHKAQNIFNQIHQPTLPLWNLMIRGWSQSDNPIE SLRTYNLMFHQGLVGDSHTYPSLLKACARVSDVSFTAMAHARVLKLGFDSLLFVTNALINAYGCCGEMGLARMVFDEMPE RDLVSWNSLICGYRQGKKFREVLGVFEAMRAAGVKADAVTLVKVGMACSVLGEWGVADAMVEYIEENEVDIDVYLGNTLI DMYGRRGMVDLARGVFDRMHDSNLVSWNAMIMGYGKAGNLVAAHELFDAMPQRDVISWTNLITSYSQAGRFSEAVRLFKE MMKAKVKPDEKTVASVLSACAHIGSLDVGEAVHNYIRKYDVKADIYVGNALIDMYCKCGVVEKALEVFKEMRKKDSVSWT SVIAGLAVNGFADSALDYFSQMLREGVRPSHGAFVGILLACAHAGLIDKGLEYFESMEKVYGLTPEMKHYGCVVDLLSRS GNLQKAYVFITKMPVPPDVVVWRILLSACQLHGNIPLAELATTKLLELDPSNSCNYVLSSNTYAGSNRWEDVIKMRGLME ESNVQKPSGSSSIEINGSTSNSVK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 8 | 124 | 117 | 1.8E-7 | ||
| PANTHER | 49 | 213 | 165 | 5.0E-110 | – | |
| ProSiteProfiles | 61 | 95 | 35 | 7.476 | ||
| Pfam | 65 | 92 | 28 | 0.17 | ||
| ProSiteProfiles | 96 | 130 | 35 | 6.807 | ||
| Gene3D | 125 | 205 | 81 | 2.2E-16 | ||
| ProSiteProfiles | 131 | 161 | 31 | 7.125 | ||
| Pfam | 136 | 162 | 27 | 1.5E-4 | ||
| TIGRFAM | 136 | 163 | 28 | 7.2E-5 | ||
| ProSiteProfiles | 162 | 196 | 35 | 10.841 | ||
| Pfam | 164 | 194 | 31 | 2.2E-5 | ||
| TIGRFAM | 164 | 197 | 34 | 1.9E-6 | ||
| Gene3D | 206 | 293 | 88 | 1.8E-18 | ||
| SUPERFAMILY | 223 | 423 | 201 | 4.45E-6 | – | |
| ProSiteProfiles | 232 | 262 | 31 | 8.879 | ||
| PANTHER | 234 | 290 | 57 | 5.0E-110 | – | |
| TIGRFAM | 237 | 265 | 29 | 5.4E-6 | ||
| ProSiteProfiles | 263 | 293 | 31 | 10.052 | ||
| Pfam | 263 | 290 | 28 | 1.7E-5 | ||
| TIGRFAM | 265 | 294 | 30 | 3.8E-6 | ||
| Pfam | 294 | 341 | 48 | 2.8E-12 | ||
| ProSiteProfiles | 294 | 328 | 35 | 13.055 | ||
| PANTHER | 295 | 353 | 59 | 5.0E-110 | – | |
| TIGRFAM | 296 | 330 | 35 | 1.3E-9 | ||
| Gene3D | 296 | 460 | 165 | 2.8E-44 | ||
| ProSiteProfiles | 329 | 363 | 35 | 7.081 | ||
| PANTHER | 349 | 559 | 211 | 5.0E-110 | – | |
| ProSiteProfiles | 364 | 394 | 31 | 10.907 | ||
| TIGRFAM | 369 | 395 | 27 | 2.1E-7 | ||
| Pfam | 369 | 394 | 26 | 1.3E-7 | ||
| ProSiteProfiles | 395 | 429 | 35 | 11.641 | ||
| Pfam | 397 | 427 | 31 | 6.0E-6 | ||
| TIGRFAM | 397 | 430 | 34 | 7.0E-6 | ||
| ProSiteProfiles | 430 | 460 | 31 | 6.182 | ||
| Pfam | 440 | 459 | 20 | 0.53 | ||
| Gene3D | 461 | 582 | 122 | 1.6E-8 | ||
| ProSiteProfiles | 466 | 496 | 31 | 5.415 | ||
| ProSiteProfiles | 532 | 566 | 35 | 5.974 | ||
| MobiDBLite | 561 | 584 | 24 | - | – | |
| MobiDBLite | 563 | 584 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0472700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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