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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0481800 |
| Transcript ID | LotjaGi1g1v0481800.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Late embryogenesis abundant protein Lea14; TAIR: AT1G01470.1 Late embryogenesis abundant protein; Swiss-Prot: sp|P46519|LEA14_SOYBN Desiccation protectant protein Lea14 homolog; TrEMBL-Plants: tr|I3STX2|I3STX2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0481800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:99520051..99521886) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGACTGGGTTTGGTGTCATTAAGCGTTATCAGTGGAGTGAGTCTGATATTTGCAGTGTTGAAAATGTCGCAGTTGTT GGATAAAGCCAAAGCCTTTGTTGCTGAGAAAGTGGCCAACATGCCTATGCCTGAGGCCAGTGTTACAGACGTTGACTTCA AGAAGGTGAGTCGCGAGTGTGTTGAGTACCTGGCTAAGATCTCTGTTTCCAACCCTTATTCAACACCGATTCCTATCTGT GAGATCAACTACACCCTCAAAAGTGCTGGCAGGTTGCTTCCTTTTCTCGATCTCTTCTTTCTTCTTGTTATTTTTAACGT TGATCATCTATTTATATGTGTTGGTTTTGATTTCAGATTCTTGTGTTTGATTTTGATATATTGTTTTGGTGAATTGTCTC GATGATCATGCATTGCTGATTGATTGGGTTCATTTTTTAATTGCAATTTGCAACTCATGGATCATGGATTATAGTTGTTG GGTTAACTATGCAGGATCTGTTTTTACTAATTTGTTTATTTGGTTGTTTTTTTTTCTTCTTCTTTGACGGTGCACCTATC AGTGCCGATGGCAAGACTAATTTAGTTCAAAGACCAATGATTCATAAACCAACCATCAAATAGTGCACACATTTTGGAAT AGTTTTTTTTTTCCTCTATATCTCATTCTTCTTATTACATCACATCATATATCACATTTATTATTTATCTCTTCACTCTT CCTATATTTCTCTAATGGTCTATACCGTTTGAGATAAGTGATAAGAAGATAAAAAGAGATAAGTGATAAATGTGATATAT GATGTGATGTGATAAGAAAAAAAAAATTAGAAAAAAAAAAGTGTTCTGATGTATGCACTATTTGGTCTGGTGGTCTATGA ATCAATGTTGTAGTTGGAAATAGTGTAACATTTACTCTTAACTAGTGTTAGAAGAATTGAACCAAATTGATTGGCCCGAC CAGGAGTCAAGATCCTGATTGGTTCAATTCACTCTCTCGTAACCGATATGGCAAATAATTTATCATAATCGGTCCAAAAT CAGTAAAACCAATTAGAACCGAATAAAAATCGATATAAATGGGTTCAGTCATTTTCTTGTACTTTTCCGAGTTTCATTTA TGCACACACATTCCTAAAATAAAAGGTTAAAAATTTATGTATTGAAGATTAAAAATTTGATTTCTTTTACTATTGAAGGT TAAAAAGTTATATATCCTGTGTTATTTTCATCGTATGTAATTATAAATGTATTTTTAAAAAATATTATTCGATCAATTAT CGTTTTGGTTTAATTACGGTTAAATCTTTGATACTTGATATTACCCAAAATATCATTGAATCTTGAATCAGTGTCTCAAG TGTTTGATAATCAAGTTCGAGTTCCATGAACACTCTATATCTTAATTTATTACTTTCGTGGGATTTGAATTTGTTAGCTT GCCTACTCCTTAACAAAACCTTGTTGGTGATTTGGTTATCTTTACTCATGTCTTAAAGAATTTCAATTTCAATAAATAAT ACTTTTGAATTTGATTTTCATATGCCTAATCATATTTTTTGTTTGGACCTGGTAATTAATCAGGGAGATAGCATCAGGCA CCATACCAGACCCAGGTTCACTGAAGGCAAGTGACACAACACTGCTGGAAGTGCCGGTGAAGGTAGCTCACAGCATATTG CTGAGCATAGCAAAGGACATTGGTGCTGATTGGGACATAGACTATCATTTGGATATTGGTCTTGTCATTGACCTCCCAGT CATTGGCAACTTCACCATTCCTCTTTCTCAGAAGGGAGAGATCAAGCTCCCAACCATCACTGACATGTTTGCCTAG
CDS sequence (LotjaGi1g1v0481800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGACTGGGTTTGGTGTCATTAAGCGTTATCAGTGGAGTGAGTCTGATATTTGCAGTGTTGAAAATGTCGCAGTTGTT GGATAAAGCCAAAGCCTTTGTTGCTGAGAAAGTGGCCAACATGCCTATGCCTGAGGCCAGTGTTACAGACGTTGACTTCA AGAAGGTGAGTCGCGAGTGTGTTGAGTACCTGGCTAAGATCTCTGTTTCCAACCCTTATTCAACACCGATTCCTATCTGT GAGATCAACTACACCCTCAAAAGTGCTGGCAGGGAGATAGCATCAGGCACCATACCAGACCCAGGTTCACTGAAGGCAAG TGACACAACACTGCTGGAAGTGCCGGTGAAGGTAGCTCACAGCATATTGCTGAGCATAGCAAAGGACATTGGTGCTGATT GGGACATAGACTATCATTTGGATATTGGTCTTGTCATTGACCTCCCAGTCATTGGCAACTTCACCATTCCTCTTTCTCAG AAGGGAGAGATCAAGCTCCCAACCATCACTGACATGTTTGCCTAG
Protein sequence (LotjaGi1g1v0481800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRLGLVSLSVISGVSLIFAVLKMSQLLDKAKAFVAEKVANMPMPEASVTDVDFKKVSRECVEYLAKISVSNPYSTPIPIC EINYTLKSAGREIASGTIPDPGSLKASDTTLLEVPVKVAHSILLSIAKDIGADWDIDYHLDIGLVIDLPVIGNFTIPLSQ KGEIKLPTITDMFA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 15 | 19 | 5 | - | – | |
| Phobius | 20 | 174 | 155 | - | – | |
| PANTHER | 23 | 174 | 152 | 3.4E-84 | – | |
| SUPERFAMILY | 23 | 172 | 150 | 7.32E-51 | – | |
| PANTHER | 23 | 174 | 152 | 3.4E-84 | – | |
| Gene3D | 23 | 173 | 151 | 4.2E-62 | – | |
| SMART | 46 | 163 | 118 | 1.1E-39 | ||
| Pfam | 66 | 162 | 97 | 1.1E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Response to desiccation | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a desiccation stimulus, extreme dryness resulting from the prolonged deprivation of water. |
Expression pattern of LotjaGi1g1v0481800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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