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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0482300 |
| Transcript ID | LotjaGi1g1v0482300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT2G46160.1 RING/U-box superfamily protein; Swiss-Prot: sp|O82353|ATL67_ARATH RING-H2 finger protein ATL67; TrEMBL-Plants: tr|G7KQJ3|G7KQJ3_MEDTR Anaphase-promoting complex subunit 11 RING-H2 finger protein; Found in the gene: LotjaGi1g1v0482300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:99571534..99572668) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAACCATGTCAAAATCAAACCCTCCTTACCTAAGCTGGCTAGTTCCAAAAACACCACCACCAATTATTTCATGTCCT CCCCAAATTTGTCTTCTCCCGCCACGGCCGCCACAAACGACGACCAACCTCATGGCATGACAACCGTTGATGAGGTAGAC GCATTCACAAGGTTGTTCCTCTTGTGCATCTTCCTCACCCTCTTCATTCGAGTATGTTATGTTTACTTTACCTCGTACCG TTTCCAAAACCTTGGTAACACATCAACAAGACATTTCAATGAGAAAAAAGCACCCACAGGGCTTCACATTGATGTTATTA ACTCCTACCAAACGTTCCCTTATGCAAAAGATAATGTTGTGATGACAATCACAAATGATCATGACACTGTGTGTTCCATT TGCATTTCGGATTATGTGGAGTCGGAGATTTTGAGGATGATGCCGCAATGTCGCCACTATTTTCATCGAGATTGTGTTGA TCAATGGTTGAAGGTTAATGGGTCGTGTCCCATTTGTCGGAGCTCGCTAATATTGCAAGGTAGCAACAATGGTTCCTCAA ACTTAGAATTCGTGTAAATTTACAACAGAAGTTGATTCAATTGGTAAATGCATAATTCTCCTTAAACAAGACCTCGATAG GTTTGAGCCTAGCATATAGGTAAAAGCATCAATGGAAGAGTCGCACGAGAATGTGAATATTCAGGATTCGAACACCATTA CCTTCTCACGAGAATGTTGATGGTTTGAACCGTTTTGTTTTCAGTCAAGAATACATGTCTTAGATAAAACAAAATCTAGC TGAATTAGCTATATAGTTACGTTAGCCATCTAAGGTGAAGGAGGCAGAGAGAAAGTTTTTATTCTTGCGGTGCTTTTTCT AGTTTTTGTCGTTTGTAACTTTGGTTTTACGTGACATTTGGGACACCATGAATTGTAGAACGTTTTTTAATATTTTGTTG ATGATCAAAAGCTTTGGGTTCTTTTTTTTCTTCTCATTTTCTCAAGGCAAAGAAAGGTGCAATATTGTGTATTTTCTCAC CTTTAAGGTTTGAATCTGAATTCTGTGACTTTTTTTTTTTTGCTGTAATTCTACAATACCACTGATTGAGAATTTTGAAA TGCGCGCATTCTTCC
CDS sequence (LotjaGi1g1v0482300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCTCCCCAAATTTGTCTTCTCCCGCCACGGCCGCCACAAACGACGACCAACCTCATGGCATGACAACCGTTGATGA GGTAGACGCATTCACAAGGTTGTTCCTCTTGTGCATCTTCCTCACCCTCTTCATTCGAGTATGTTATGTTTACTTTACCT CGTACCGTTTCCAAAACCTTGGTAACACATCAACAAGACATTTCAATGAGAAAAAAGCACCCACAGGGCTTCACATTGAT GTTATTAACTCCTACCAAACGTTCCCTTATGCAAAAGATAATGTTGTGATGACAATCACAAATGATCATGACACTGTGTG TTCCATTTGCATTTCGGATTATGTGGAGTCGGAGATTTTGAGGATGATGCCGCAATGTCGCCACTATTTTCATCGAGATT GTGTTGATCAATGGTTGAAGGTTAATGGGTCGTGTCCCATTTGTCGGAGCTCGCTAATATTGCAAGGTAGCAACAATGGT TCCTCAAACTTAGAATTCGTGTAA
Protein sequence (LotjaGi1g1v0482300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSPNLSSPATAATNDDQPHGMTTVDEVDAFTRLFLLCIFLTLFIRVCYVYFTSYRFQNLGNTSTRHFNEKKAPTGLHID VINSYQTFPYAKDNVVMTITNDHDTVCSICISDYVESEILRMMPQCRHYFHRDCVDQWLKVNGSCPICRSSLILQGSNNG SSNLEFV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 29 | 29 | - | – | |
| PANTHER | 15 | 165 | 151 | 4.9E-63 | – | |
| PANTHER | 15 | 165 | 151 | 4.9E-63 | – | |
| TMHMM | 30 | 52 | 23 | - | – | |
| Phobius | 30 | 52 | 23 | - | – | |
| Phobius | 53 | 167 | 115 | - | – | |
| Gene3D | 62 | 153 | 92 | 6.2E-20 | ||
| SUPERFAMILY | 98 | 155 | 58 | 3.53E-20 | – | |
| Pfam | 106 | 149 | 44 | 5.6E-13 | ||
| CDD | 106 | 149 | 44 | 5.16194E-16 | – | |
| ProSiteProfiles | 107 | 149 | 43 | 12.696 | ||
| SMART | 107 | 148 | 42 | 1.5E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0482300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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