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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0484100 |
| Transcript ID | LotjaGi1g1v0484100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin efflux carrier component; TAIR: AT5G16530.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9FFD0|PIN5_ARATH Auxin efflux carrier component 5; TrEMBL-Plants: tr|A0A0L9U3R1|A0A0L9U3R1_PHAAN Auxin efflux carrier component; Found in the gene: LotjaGi1g1v0484100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:99761289..99764989) extracted from Lotus japonicus Gifu genome v1.2.
TTAACATGCACTTTCCTTACAGCTCTTAATTAGCTTGCTAGTTAGAAGCCTTGTGCATGCAAATTATTCATAATTTTTTC TTGAGAAGTTGAAGGAATTAAGATCATAAAGGGCACAAAAGGGAAGAGAGCGAGAGACAAGAAAAAAATTAAAAAAAGAT GATCGGCTTAGAAGATGTGTATAAGGTGATAGTAGCGGTGGTGCCACTCTACTTCGCCCTGTTTTTAGGCTACGGCTCCG TGCGGTGGTGGAGCATCTTCACAAGAGAACAGTGCGATGCGATAAACAAGCTCGTCTGCTACTTCACCTTGCCACTCTTC ACCTTCCAATTCACCGCTCACATCGACCCTTTCAAGATGAACTACTTGTTCATCGCCGCTGACACCATCTCCAAGTTCAT CATCATCGCGGTTCTCGCCCTTTGGGCCAAGTGCAGCAGCAAAGTGAGCTTCTGCTGGTTCATAACGAGCTTCTCTCTGT GCACTCTCACGAACGCGCTTGTCGTGGGAGTGCCGATGGTGAAGTCCATGTATGGACCACTAGGCGTGGACCTGGTGGTC CAATCTTCGGTCGTGCAGGCGATCATATGGCTCACTTTGCTTCTCTTTGTGATGGAGTTTCGAAGGGCGGGAATTGAGGG CACTACCACCACCACCTTCAACGCTAAACCAAAAATGACGGTTGTTAGCGGCGGTGGTAACTTGCCGGACCGTGAAGATG GAGAAAGGAAAGAAGTAGCTGTTGATGTGGAAGACAATAGTACTGATATTAGGCCTCCTTTATACAAGGTGATGAAGCTT GTGGGGATTAAGCTTGCAGTGAATCCAAATACATATGGTTGTGTCATTGGTATTTCATGGGCTTTCATATCTAACAGGTA CTCCATTTCTTAATTTCATGCCCATTTGTCTATATGTTGAAATCATTTAACAAAACATTGGTTGTTTTGAGTGATACATA CTTGATTTTATTTAAATAAAGTACTAAGTTTGAGTCTTGTGCATGAAAAGTCATTATTATTAAGAGATTTGAGCCAACTA TAATGTGTATGTTCTCAGCTCGAACATAATTATTTTATTTAAATAATAACTAATAATTTATGATGTTTTGCAAGCGTTTA TTCTTTTGGAGAATGTTTATTGACATATAGCAAGTTTTGACACATATTGAAACACGTGATTTGTGGCAATTTTTAATCAA ATAAAATATTTTTCTGACAACTTAGAAAAGAGGCACAAACTTCCACAAAGTTTTGCGTATTTATTTTTCAGACGTTTTAA AACTCTTAGTAACGTCTTTTTTTTCTATTCACATTTAGCAGATATATATGGTAAAAACCATCGTTGAACACGTATGTCAA TAACATGTCACGAAGTGTCAGAAACTATTGATTGATTCCTTTTAAGAGACTCTCACTTTATTTGCCAATTGCTGCTTTTG TATATCAAATATTTTTATTATTTATGTGAGTGTGATGTGCATGTATGTTATATATATATATATATATATAGGTGGAATTT GGAGATGCCAAGCATGGTTGAAGGGTCTATATTGATCATGTCAAAAGCAGGGATGGGAACTGCCATGTTTAGTATGGGTG AGTGACTTACTTAATATTGTTATATATCATGTATATAACAATATAATATGGTACTTAATGCCAAGCATGGTTGAAGGGTC TATTTTGATTATCACTAATTCACTATGTATTTTTATTGACAACTTAATTAGATAAATAAAAAATAAGCGGTTAATTCGGA TTAGTAGGTGATATATATTGTGTGATGTGCATATATGCAGGTATTTTCATGGCACTTCAGGACAAGCTGATTTCGTGTGG ACCAACTCTGAGTGTGTTTGGTTTGGTTTTAAAGTTCATTGCGGGGCCAGCAGCTATGGCTATTAGTGCTATCGCTGTTG GATTGCATGGTGACGTTTTACGAGTTGCTATCATTCAGGTAACTTCATTCAATTCACCAAACATGCATATATGCTTCCAC TCCCATACACAAAAATTCCATATAAAAAAAATACTCGTAACACTCTTTAATTAATTAAAAGTCATGAGTGCACTAAAAAT ACAGGTCACTCTTTCAATTTAGTAGAATCCGCGTGAATATGATCAACCAATCAATGAGAGTATTGTAAAAAAGTATTAAA GTGTTATATGTTTATCCTAAAATAGTTTCAAGGATGAGAGAATTCTAGTCACTATTCATCTATTGTAAATTGGTAAGCGA GTGGTGAAATTGGTGCATCAAAAAAATTGTGCGAGGACAAGTTTGTTCATACATAAAAGGAAGGTGTTGATATGTAAAAC GTTGGTCAAGTTAATCACTAAAAACATTGATTAATTTAACTGATATTTTACACAATTAAGAATTGTGAAAATATTTTTAC AGTCAATGAACCAATTTAATTATAAGCGTGTCAGCATCCAAATTAGTGGATGAGTGACAGTGAGGAGGAATATGGAACAA GGATGTCACACTACATGTTTGCTCTGTTAACCTTCTATTTTGATTTTTTTAAATCAATTGTAGGTAATGTCCGGTTGAAA TAAACAAAATAGTTGATTTCAAAAAAAAATAAACAAAATAATTAGTATAGTAAATTAACTTATCTAAAAATCAAACTTGA GTTAGGCATAAACATTATTTCAGAGTACCCGTCAAAAAAACATTATTTCAGAGTAAATAACAGGATTGTTTTTTTTTTTT TGAAAATAACAGGATTGTCTATATCATTTATGAAAAATAATAGACACGTTTTTTTAAATAAATATTATGTTCTTAATTTC TAGCTTAAAAACGATATCAATTATAATATTATTTTGTTCTATTTTGTGCATGCAGGCTGCAGTTCCCCAATCCATCACAT CCTTCATTTATGCTAAAGAATACGGGCTACATCCAGAGGTTCTTAGTACTGCGTAAGTTCAATATTCCTTTATCTTACAA CTGTGCATGATACGTGAACCTCAAATGGTGTCATCACATATATTTTTATTGAGGTTATAGACCGTTGTAAAGTGAAAAAT TATAGAAAAAATTATAAAATACGTTTGATGGCGGTCTAAAACCTTTACAAAATTTAGTGTTATTAGTGTCTCATGATGTC TTGCAGTAACCAATCATTACTGTTTTGCTTATTATGTTGAAGAATTCTTAAACCAACTTTATTTTTACAATTCCTATGCT AAAACTTTGAAAGAAATTGAGGAACAAGTGTAGAGTAATATGTTGCAGTTTATGCTAATATATATTTTAAATTTTATTGT CTTCAGGGTGATCTTTGGAATGATTGTTTCGCTTCCTGTCTTAGTTGCCTACTATGCAATATTGGAGTTTATGCATTGAT CCTCTCAGAGATCCATTTTTAAGACAAAAAACATAAGAAAAGGGGGATAATTCAAGCTTTCTTCGTCAAAGTTGAACTAA AACTTTGGCAACCAAAACCATCATGTGTTAACTTGTAATTTTTTTATTTTTAATATTTGTTAGGCAGCTAGTCAATTATT ATTTATTTTCCATGAAATGTAACACAAATGTTGAAACCATCCATGTTTAGACGCGGGGACTATTACTATCAAAACTTGAT TACTTGGAGCAATAACACAATTTGATATCTAAATGTCGTTGGAAATACACACAACTCTCTTGCCATCGTGGTCTGTCACT GTTAGTAGAGGTGGAAATAGG
CDS sequence (LotjaGi1g1v0484100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCGGCTTAGAAGATGTGTATAAGGTGATAGTAGCGGTGGTGCCACTCTACTTCGCCCTGTTTTTAGGCTACGGCTC CGTGCGGTGGTGGAGCATCTTCACAAGAGAACAGTGCGATGCGATAAACAAGCTCGTCTGCTACTTCACCTTGCCACTCT TCACCTTCCAATTCACCGCTCACATCGACCCTTTCAAGATGAACTACTTGTTCATCGCCGCTGACACCATCTCCAAGTTC ATCATCATCGCGGTTCTCGCCCTTTGGGCCAAGTGCAGCAGCAAAGTGAGCTTCTGCTGGTTCATAACGAGCTTCTCTCT GTGCACTCTCACGAACGCGCTTGTCGTGGGAGTGCCGATGGTGAAGTCCATGTATGGACCACTAGGCGTGGACCTGGTGG TCCAATCTTCGGTCGTGCAGGCGATCATATGGCTCACTTTGCTTCTCTTTGTGATGGAGTTTCGAAGGGCGGGAATTGAG GGCACTACCACCACCACCTTCAACGCTAAACCAAAAATGACGGTTGTTAGCGGCGGTGGTAACTTGCCGGACCGTGAAGA TGGAGAAAGGAAAGAAGTAGCTGTTGATGTGGAAGACAATAGTACTGATATTAGGCCTCCTTTATACAAGGTGATGAAGC TTGTGGGGATTAAGCTTGCAGTGAATCCAAATACATATGGTTGTGTCATTGGTATTTCATGGGCTTTCATATCTAACAGG TGGAATTTGGAGATGCCAAGCATGGTTGAAGGGTCTATATTGATCATGTCAAAAGCAGGGATGGGAACTGCCATGTTTAG TATGGGTATTTTCATGGCACTTCAGGACAAGCTGATTTCGTGTGGACCAACTCTGAGTGTGTTTGGTTTGGTTTTAAAGT TCATTGCGGGGCCAGCAGCTATGGCTATTAGTGCTATCGCTGTTGGATTGCATGGTGACGTTTTACGAGTTGCTATCATT CAGGCTGCAGTTCCCCAATCCATCACATCCTTCATTTATGCTAAAGAATACGGGCTACATCCAGAGGTTCTTAGTACTGC GGTGATCTTTGGAATGATTGTTTCGCTTCCTGTCTTAGTTGCCTACTATGCAATATTGGAGTTTATGCATTGA
Protein sequence (LotjaGi1g1v0484100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIGLEDVYKVIVAVVPLYFALFLGYGSVRWWSIFTREQCDAINKLVCYFTLPLFTFQFTAHIDPFKMNYLFIAADTISKF IIIAVLALWAKCSSKVSFCWFITSFSLCTLTNALVVGVPMVKSMYGPLGVDLVVQSSVVQAIIWLTLLLFVMEFRRAGIE GTTTTTFNAKPKMTVVSGGGNLPDREDGERKEVAVDVEDNSTDIRPPLYKVMKLVGIKLAVNPNTYGCVIGISWAFISNR WNLEMPSMVEGSILIMSKAGMGTAMFSMGIFMALQDKLISCGPTLSVFGLVLKFIAGPAAMAISAIAVGLHGDVLRVAII QAAVPQSITSFIYAKEYGLHPEVLSTAVIFGMIVSLPVLVAYYAILEFMH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 369 | 369 | 1.4E-174 | – | |
| PANTHER | 1 | 369 | 369 | 1.4E-174 | – | |
| TIGRFAM | 1 | 366 | 366 | 1.2E-87 | ||
| Phobius | 6 | 25 | 20 | - | – | |
| TMHMM | 10 | 32 | 23 | - | – | |
| Pfam | 10 | 363 | 354 | 1.3E-93 | ||
| Phobius | 26 | 44 | 19 | - | – | |
| Phobius | 45 | 62 | 18 | - | – | |
| TMHMM | 45 | 62 | 18 | - | – | |
| Phobius | 63 | 67 | 5 | - | – | |
| TMHMM | 67 | 89 | 23 | - | – | |
| Phobius | 68 | 90 | 23 | - | – | |
| Phobius | 91 | 96 | 6 | - | – | |
| TMHMM | 96 | 118 | 23 | - | – | |
| Phobius | 97 | 120 | 24 | - | – | |
| Phobius | 121 | 131 | 11 | - | – | |
| Phobius | 132 | 151 | 20 | - | – | |
| TMHMM | 133 | 152 | 20 | - | – | |
| Phobius | 152 | 214 | 63 | - | – | |
| TMHMM | 215 | 237 | 23 | - | – | |
| Phobius | 215 | 237 | 23 | - | – | |
| Phobius | 238 | 252 | 15 | - | – | |
| TMHMM | 252 | 274 | 23 | - | – | |
| Phobius | 253 | 274 | 22 | - | – | |
| Phobius | 275 | 285 | 11 | - | – | |
| Phobius | 286 | 308 | 23 | - | – | |
| TMHMM | 287 | 309 | 23 | - | – | |
| Phobius | 309 | 313 | 5 | - | – | |
| Phobius | 314 | 334 | 21 | - | – | |
| Phobius | 335 | 345 | 11 | - | – | |
| TMHMM | 344 | 366 | 23 | - | – | |
| Phobius | 346 | 365 | 20 | - | – | |
| Phobius | 366 | 370 | 5 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0484100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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