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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0487100 |
| Transcript ID | LotjaGi1g1v0487100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LUC7-related protein; TAIR: AT3G03340.1 LUC7 related protein; Swiss-Prot: sp|Q9Y383|LC7L2_HUMAN Putative RNA-binding protein Luc7-like 2; TrEMBL-Plants: tr|V7B1L9|V7B1L9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0487100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:100007465..100014148) extracted from Lotus japonicus Gifu genome v1.2.
AGACTTGGACCTCTTTAACTTAACCCTAAAACTCACAAAGGAGTGTGATTTGGGGGTAAAATTCCAGATCGCGCGAGAGA GAGAGAGAGAGAGAAGAAAGAAAACCAAAACCATATCACAAGTAGAAGAAGAAGAGTGGCATCTATCAACAACGCCAGTA ACAGAGGAAGCAACTGGTTTTCACTGTGAGTGGCAAAGCGAGCATGGACGCGATACGGAAGCAGCTTGATGTGTTGATGG GAGCGAACCGAAACGGCGACGTTCGTGAAGTGAACCGCAAGTACTACGATCGCGATGTCTGTCGCCTCTATCTCGTTGGT CTCTGCCCTCACGAGCTCTTTCAGCTCACGGTAACATTCTTCATCAACAACCCCTCTTTGTTTTCAGCGTCGTTTTGTTC TTAGGGCTTCGTCGTTTTGATTCTGTGACTGGTTTTGTTTTCAGAAAATGGATATGGGTCCTTGCCCTAAGGTGCACTCC TTGCAGCTCAGGAAAGAGTATCCTTCACGATCTCTGCTCTATTTCACTCTTCTGTTTCGTTTTCTCCCTTTACTTGCTGC ATATATGTTCCAACCACTTAGGGTTAGGGTTTTGAATTGGTGTACTCTTTGGCTGTAAGATATGTCAGCTTTTGAAATCA ATTAACGGCCTTCTGTTGTTTTAATTTTGAGATTCAAGTTCGCTAACAGCAATACCCTTTGAATTAGGAAAATCTGGTCC TGCCATGAATTTTCTTCTACTTCAAACCCTTTGAATTATGATGGCTTTGTGTAATGAAATAGCTTTGTAAGTTTGGAAGT CTGAAAATTTAGTGCGAATTTTATTAAATTTGGAAGATTTTGTAAGATGTGAAATTAGGGTTTGAAGGGGGTGGGATTTG ACAGAAGTTTGAAATTGGTTAATTGATTTCATTTCTGAATATTTTGGATAACAACGAGAGTGTAAGTAGAAGGAAAGTGA TAAAAAATTGAAAGATGATGTGCTATGATTATTATTGTCTTTTTGGGTATTTCCTTAACTGTTTCTAGATATGAGGAAGC GAAAGCAAAAGGTGCCGACAATTATGATAGGGAGTTGGAGGACGTCATAGATAAGCTTATTAGTGAGTGTGATAGGAAAA TTGGCAGAGCGCTCAAGCGTCTTGAGGATGATGACGCCAAAGCTGCAATTGCAATTTCTGTTTCTGAAGTAACTCAGGTG ACTTTGAGTCTTGGTCAGATTTATTTGTGAGTGATGATTTAGCTGGTGATAATTGTTTTTTCAATGTGCAGACACCTGAG GTGCTCGAGTTGTCCAAACTAATCAAAGAGAAGTTGAAAGAGGCTGATCTACATGGTATGTAAATATTTTTTGCTTCTAG ATTTACTTGCATTTCTGAGACTTCAATTGTAATGAGATAAGAATAGAATACTACAGGGGATGATAAACTGTTGATAGCAT TTGTTTATATGGTCTCATTTGAAGTTGTAGCTTTTGCCTTAAGATGAACTTGCATGTTGCTGTGGGTATCACATTTTTTT GTTCTCTCGCCCCTGGTTGCAAGCCTATGCTTTACATGTGTGAATCTGCATTCGAAAATAGGCATAATCTGAATCTGTTC TAGCCTTCTAGGTATTGAATATATCTCAGAGTAAAGATGTGGGTAGTTTCTTCCCTTGATAATTCATATTTTCAAGTCCA ATTATTAGATCTCAGGATCGTATCACTATGAAAACTCCAAATCATATTCCAACTTGATCAAATTTGAAACTATTTGATAT GGCATTAGATACTTTTATTTGTCACCCCAAATTTCAACTTCCTGTTTTTTTTTTTTCCACTTGTGTAAAATAATTTTGGG TTTGCAGATCTTGAAGGCATGACAGATTCGAAGATCCGAGCACTGGAGGTTGTAGAGGAGCTTAGAACTAAAAGAGCAGA CAAGCAGGTCAGTGATCACCCTTGAACTTGAAGATCAATGTGGATTGTCTAAGATGTGATGGTGTTGTCTTTCTTTTGCT GTTCATGTTGTTAGACTGTCAAGATAGTTATATAGTCACTATTATAGTGGAACTTACTAACAACTCTTTTGTCTTCCTAT CGATTTTCAAACAGTCTGTACTACTTTTAGACGCATTTAACAAAGATAGGGCATCTTTACCTCAACCTCTGCCTAATCCG CCACCTTTGGCGCCTCTTCCTGCCACTGCTCCTGATCCTCAGACACAGGAGATGATAAATGAGAAGATGAGAAAGGCTGA GGAACTTGGTAAGTCAATGATACTCTTATTGGTTATGTTTTCTTTTGCTAATTTGTACACACATGGCTTTTCTGCTAAGA ACTATATTTGCAGCATTTTGATTGTATTAAAATATTTAACAACAGATAAACACAACCAGCCAATCCAAACACACTGATTT GTTTGCAATTGTCTTTATAACCAATTGGAGTGTTACGTAGCTCTAAAATTTGCTATGCGCTCACTTTTCGAATGCTAATG TACTCCTTAGCATTTTAGACAGTTATGAATAAGCAAACTGATATATTTCGGGATTAACAGATAGCTCTGGGTCAAGAACC CTGGAGAATTTGAAATTGGAAGTGATGACATACGACTTAATTTGATGACAAAATCTGATCGCGATAGTTCCTAAGTTGTT TTCCATTAGGGCTTCTAAAGTTTAACAGTTCTGGCATCCTAATCAATCCATTGCACATCTTAAGTAAATCACAACACTTG GAGATTATTAAAAGGTCACATGCAATTCTGACTGACCTGAACATAATGCATAGAAAAGTTAAAATAACATCATTAAAATA TTATTACTAATCCTCCGGGAGTCCTGGTCATGTCTCACAACAACAACAGCAACAACAACAATAAAAGCCTTATCCCACTA AGTGAGGTCGGCTATATGTATCACAATTAAAAATATTTAGTGCTGATATCACAGCGAAATTTCAAGGTGTAGGAAAAGGA TTTTGGCCACAGAGAGAACGGAATCACGAATGTTGAGGAGATAATTTCCATGTCTAAGAAGATCTTTACCATTTATATAA TCTGATTTTTTAATTTAATTTCTCAAACTAATACATTTTGACTTTAGCCTCTAGGAAGATTTGGTATGCTTGTGTTCTAA TATCAACATAATTGACTGCTGCCCGGAAGTTGTTATAGAATTTTCATTTCTTTTGGATCTTGATTGTGTGTGTAACTCAA AACACCAACTTTGTTCTTTGCCTTCTGTTTTGGAACTCCAAAATGTAAACATATGCCTTCTGGTTAGCAACTCCAAAATG TAAACATATACCTAAGGTTAGGAAAGGATCTTTGCTTTTTATTTAATGATATTATTTTGAATGAACAGGCGAGCAAGGAT TGGTTGATGAGGCAAAAAAAGCAATGGAAGAGGCTGAAGCCCTTAAGAAGGTCATTCATATGTTTTGTCTATGAAGTTAT TGCAATATTTTATCGGCTTACCTGCTGCATTTTTTTATTAATCGTTTCTAGCTTTTACTTGCTAATGACTCTAAAGGTCT GATTGTTCTGTTACAGCTTCCTCCCAGGCAGGAGCCAGTATTGGATTCTTCAAAGTATACAGCTGCCGATGTGCGGATTG TGAGTGTTTCCATGATCTGTAACTCTTTGTATATGTTAGAAAGTTACATATATATTTCCTCTATAACAACAAGTAAGCTG TTGGAATAAATTAAGTGTAGGAAATGTGCTTTGAAATAACTCCCATTATAATAATTTTTGTCTCTGTCCCATAAGTTTAT ATTAGCTATTTCTCCAATGTTCACAGCTAAAGAGGTATAAAGTAATATGTTTTGTCCCAAACTGATTCATTGTGAGTTGG TACTTGAGGGAGCAATATACAGATATGCATGTAGAAGTAGACTGTGCAAAATAATTCCCCATACATAATTATATATCCAC GTTTTTGGCATGTAGGTTTTCATTTTTTGCCAACATTTTTGGTTTATTTAGTTTTAATATAACTAATGATTCTAATACCT GTTTTACTCATATATAACGATTCAGACTGATCAGAAGCTACGTGTGTGCGACATTTGTGGAGCATTTTTGAGTGTTTATG ACAGGTAAAAACCAATCCCGTGCCCCCATTTGTTTTTGCCCCTTTTAAGTTTTGCTAGGGATTTATGGTGTTAGAGTTTG GGGTTTCGAGTGCTTCAGCTTTTGATCCGTTAGTAATACCTCCTTGTCACCAGCAGGCTCTTGTGCCAGTTTTACGAGGA TAACTTTTGCAGCTAAAGAATGTGCGTCTTTTCTGTATTTTGCTTGTAGATCATGCTATTCTAGCTAGCAATTTTTGGGG AAATCATGTCATATATCATTTTGAAGTCATGATACTTTGTTAATTTTGCTGCAACATTTTGATTTATATTATTATTTACA GTGATCGCCGTTTAGCTGATCATTTTGGAGGGAAACTTCATTTAGGGTATATGCAAATTCGTGAGAAGTTAGAAGAACTT CAAGTAAGTCGTTTTTCATGCATTTCTGATCTTGTTTAATTTTATTCTATTCAAATACTGATTGCTAAATAAGTAAATAT AAATAAATATATGGAGAAATTGTTTTGTTTTGCCTGTTAGTTGTTTACAACATGACTCCTATAGCATCTCTTTTGATAAC CTTTCAGGCTTATGCTTTGTATGGTTTTGTTTTTGGGAATGCATTTAGTTTATTTTTGTATATCAAATAGCATACGGACC TTTGGTTTAATCGGTAAGAGAGTGGACCTCAGACTATGTTATTTTCTCTGGTTCAGGAAGAAAGGAATAAGAGCCGCAAG TTGGATCGGCATGAGGACAGGAGGTAAATTTCATTACTCCAAAATGTAGTAACATGTATGAAAGTGAAATGTTTCATATG CAAATAAATATCTTTTGCATTTATTTGCATAGATCAAAAGAACGGAGTCGGGATCGTGATAGGGAGCCGAGTAGGGACCG TGAACGTGGTGAGAGTCATGAACGGGGGCGAGACATCGATCGTAGGAGCAGGGACCGAGATAGGCACCATGATAGAGACC GTGGATATGACCGGGACCGTAATGGAGACCGCAACCGCTCCTATGATTCAAGAAGTCACCGGAGGTCCCGCTCACGGTCT CGGGATCGTCCTCGAGACTATGATCGTCACAGGTACAAGCTCTCTAGTCTATTCCTTGGTTACCTTTGTTAAATTCTGTC GTTCTTTTTTCGATAACTTGCTACTGTTAATCTTGGAAAATAAGTGTTGTGAGGAGCCAATAGGAGTGGCACATGTAGGT CAATGATCTATAATAAAATACGGATTACTAGATTAAGCATTATCTCTTTTGGTATCTAAATACCATAACAGATGTGTTGT CTGATGAAAGCTACTGGCTTTATCTTTGGTTAATTCATTTTCTTTTTCTCACATTATTTTTCTTTTTCTTTTTCTCACGT TATTTTCTGAATTGGTTCCTCTAGACTTGCAGTCATTTATAATTTTAAAGAGAAAAGTGAGGGATTTCAACTATAATAAC AGTCTAACCTTTTCTCCCATTAGGTGGGGCTGACCACACCGCACGATATCATAATATCCTAACTTGTATTAAGTTCAAAG ATACGAGAGGTTTCAACTATCGATGAAAATAAATAAATCAAGAGTGGATTTTAGCAAATTCATGGATTGTTAATAGGAAA ATTTTATCTTCACACCCATTCCACCCACACCTAAATTAGAGAGATAGGAATGAAAGAGAGAAATAAAAGATATAATGGGT GATGTGATAGAAAACGGAGTGAGCGATTGGAAGAAAAAGATGATGGATATGGGATGGAAGAAAAATTGGGTGTGAGTGAA TCAAAACTTGTTACATGTACACTTGTACTATCAGTAGTGGATTTTCAGATCAATGATTGAACTTTTACTTTTTTCTCTAA AATAAAGATGCACTTGGAGAAAATAAATATCAATAGTTGAAATATTTTATTTATGTATGCCTTGTACCTAACCTGTCTTA CTTTTTTGCCAGGCGTCATGATCGGTACTAGCAACTGCCGTGAGTCATATATTGTTATGGTTATCATGAAATGTCTAGTC TAGGTGGGTGTTGAACCAGGTGTTGGACAAATAATTTTGCAATGTATTGAGCTATTTCTCCAACGATGGATGTATAACTT GAGCTTAGGTGTGTAGCAAAATTATGGTTTGATGTTCCTTTGGAGAGATTAAATCTAATTTGTAATCTGCCTACTTGGAG CAGTTCTTGCAATTGTGCTTGAAGTAGTTTTCTCTAGGTCAACATTTAGGCCGTGTTTTGAATATCTTATTTGAGCTCAT TTTATAGCATAGACGCTTGTATAAGTGTTTGAGTAATCTTATGAAAAAACTTATGACCTATCTCTAAGATGCTTTGAGCT TATTTTCATAAGAAGCTCATGTTTAATGCTATAATCATAAGCTATTTTGAACTTATTTCAATAAGTTTATAAAATTATCT GCGCGCTTAGTCAAGTTGTTTACTCAAACACATTTGAGGATAATGAAGGAATTGTTATTTCAATTGAGGATTCAATTTTT TTAAAATATACTAATTAACACCCTTTGGGGTTGGGGTAGTGAACCATTTTGTTTCTAGGGCGGTACTGGTACGAAAGTTG AGTGATAATACTTACTTGAAGAATAATTGTAAGTCATGATTGAG
CDS sequence (LotjaGi1g1v0487100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGCGATACGGAAGCAGCTTGATGTGTTGATGGGAGCGAACCGAAACGGCGACGTTCGTGAAGTGAACCGCAAGTA CTACGATCGCGATGTCTGTCGCCTCTATCTCGTTGGTCTCTGCCCTCACGAGCTCTTTCAGCTCACGAAAATGGATATGG GTCCTTGCCCTAAGGTGCACTCCTTGCAGCTCAGGAAAGAATATGAGGAAGCGAAAGCAAAAGGTGCCGACAATTATGAT AGGGAGTTGGAGGACGTCATAGATAAGCTTATTAGTGAGTGTGATAGGAAAATTGGCAGAGCGCTCAAGCGTCTTGAGGA TGATGACGCCAAAGCTGCAATTGCAATTTCTGTTTCTGAAGTAACTCAGACACCTGAGGTGCTCGAGTTGTCCAAACTAA TCAAAGAGAAGTTGAAAGAGGCTGATCTACATGATCTTGAAGGCATGACAGATTCGAAGATCCGAGCACTGGAGGTTGTA GAGGAGCTTAGAACTAAAAGAGCAGACAAGCAGTCTGTACTACTTTTAGACGCATTTAACAAAGATAGGGCATCTTTACC TCAACCTCTGCCTAATCCGCCACCTTTGGCGCCTCTTCCTGCCACTGCTCCTGATCCTCAGACACAGGAGATGATAAATG AGAAGATGAGAAAGGCTGAGGAACTTGGCGAGCAAGGATTGGTTGATGAGGCAAAAAAAGCAATGGAAGAGGCTGAAGCC CTTAAGAAGCTTCCTCCCAGGCAGGAGCCAGTATTGGATTCTTCAAAGTATACAGCTGCCGATGTGCGGATTACTGATCA GAAGCTACGTGTGTGCGACATTTGTGGAGCATTTTTGAGTGTTTATGACAGTGATCGCCGTTTAGCTGATCATTTTGGAG GGAAACTTCATTTAGGGTATATGCAAATTCGTGAGAAGTTAGAAGAACTTCAAGAAGAAAGGAATAAGAGCCGCAAGTTG GATCGGCATGAGGACAGGAGATCAAAAGAACGGAGTCGGGATCGTGATAGGGAGCCGAGTAGGGACCGTGAACGTGGTGA GAGTCATGAACGGGGGCGAGACATCGATCGTAGGAGCAGGGACCGAGATAGGCACCATGATAGAGACCGTGGATATGACC GGGACCGTAATGGAGACCGCAACCGCTCCTATGATTCAAGAAGTCACCGGAGGTCCCGCTCACGGTCTCGGGATCGTCCT CGAGACTATGATCGTCACAGGCGTCATGATCGGTACTAG
Protein sequence (LotjaGi1g1v0487100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDAIRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLVGLCPHELFQLTKMDMGPCPKVHSLQLRKEYEEAKAKGADNYD RELEDVIDKLISECDRKIGRALKRLEDDDAKAAIAISVSEVTQTPEVLELSKLIKEKLKEADLHDLEGMTDSKIRALEVV EELRTKRADKQSVLLLDAFNKDRASLPQPLPNPPPLAPLPATAPDPQTQEMINEKMRKAEELGEQGLVDEAKKAMEEAEA LKKLPPRQEPVLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIREKLEELQEERNKSRKL DRHEDRRSKERSRDRDREPSRDRERGESHERGRDIDRRSRDRDRHHDRDRGYDRDRNGDRNRSYDSRSHRRSRSRSRDRP RDYDRHRRHDRY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 411 | 411 | 4.3E-176 | ||
| PANTHER | 1 | 411 | 411 | 4.3E-176 | – | |
| Pfam | 2 | 171 | 170 | 6.0E-39 | ||
| MobiDBLite | 184 | 206 | 23 | - | – | |
| MobiDBLite | 187 | 202 | 16 | - | – | |
| Pfam | 208 | 326 | 119 | 7.8E-34 | ||
| Coils | 224 | 244 | 21 | - | – | |
| Coils | 300 | 323 | 24 | - | – | |
| MobiDBLite | 312 | 412 | 101 | - | – | |
| MobiDBLite | 312 | 386 | 75 | - | – | |
| MobiDBLite | 397 | 412 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | MRNA binding | Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. | ||
| Cellular component | U1 snRNP | A ribonucleoprotein complex that contains small nuclear RNA U1. | ||
| Biological process | MRNA splice site selection | Selection of a splice site by components of the assembling spliceosome. |
Expression pattern of LotjaGi1g1v0487100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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