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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0490100 |
| Transcript ID | LotjaGi1g1v0490100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat receptor-like protein kinase; TAIR: AT3G28450.1 Leucine-rich repeat protein kinase family protein; Swiss-Prot: sp|Q9LSI9|BIR2_ARATH Inactive LRR receptor-like serine/threonine-protein kinase BIR2; TrEMBL-Plants: tr|V7B1B9|V7B1B9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0490100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:100344097..100346866) extracted from Lotus japonicus Gifu genome v1.2.
AGTACATGACTGAATGCTGAAAGTGAAGAATTTTCAAAGGTATAATACACACATATGTCTCGGAAACTTACAATTGTAAA TTTCCACCAACTTTCCTTTCTTTTTTTTTTGTAAATTTCCACCAACTTAAATATATCATTACTTTTTTCTAATCTTCTAT ATATTTCTGATGTTTAGCCCCTTCTTTTATGCAGAGTGATGCTTCTGTGCTGCTGTTTCCTGAGCTGAACTTTCCGAAAT CCCTGGTTGGTATTTGATTATCTCTGTTGAAAATTCATTTGATTTTGAATCTGGGTTCCTTTACTTCTTGCTTTTATTGA TCGATGCCATTATGTCAAAGTAAACTTTACTGAGTTTCTCTTATTTGTTTTGAAGTTTTCATTTTTAAGTCTTCGGTTAA AAAACTGTGAATTTTGGTCTGCAAGGAAAGAAAATTGGTTTGGTTAATTGGTATGGCTATGAAGTGCTGAATTGAGTTGT TGTTGTTTATTGTGTTGTGTTTTAGGGTGTGTTCTTTTGAGCTGAGGACTGAGGTGATCATGATGAAGATGGTTTTGAGT AGCCGAGTTTTCATTGCTCGTGTTATTGTTGGTTTCTTTCTGCTGATTACCTGTGGCATGACCTATGGGACTGAAAGTGA TATCTCCTGCTTGAAAAGTGTGAAGGCTTCACTTGAAGACCCTTACAATTATTTGCAATCCTGGAATTTCGAACACAAGG CAGAAGGGTTTATCTGCAAGTTTACCGGGGTCGAATGTTGGAATCTTCTTGAGAATAGGGTCTTGAATCTCAAACTGTCC AACATGGGACTCAAGGGCCATTTCCCTCGTGGCATTCGAAATTGCTCAAGCTTAACAGGATTGGATTTGTCAAATAACAG GCTCTCTAAAACCATTCCAGAAGATATATCTACCCTTCTCACCTTTGTGACATCCCTTGATCTATCTTCAAATGACTTCA CTGGGGCAATTCCTGTGTCCCTTGCAAACTGTTCCTATCTTAATACCATCAAACTTGACCAAAACAAACTCACTGGTCAA ATTCCTGAAGAATTAACTCAGCTCCAGCGGCTCAAGTCATTTTCTGTTTCCAATAATTTTTTGACAGGGCGAATTCCGAC ATTCAGATGCGGTGTAGCTTCAGCGGACAGTTATGCAAATAATTCAGGCCTCTGTGGTGCTCCCTTGGATCCTTGCAGGG CTTAGTCTTCCAAGAGCAACACAGCAGTTATAGCTGGAGCAGCTGGCCCTTGAGTAACACAGCAATCATCCTACCTCACC GCCTTCCCCTTCCTCCAACATGTACCTTTCGTTGATTTAGTCTCTTAAAATTTTATATAATAAAATTTAGGTGCCCACTA GGGTGGGTCACTTTAGAATTGGTCCATGGGTGGACCAAGAGTGTGTTTAGTAATTTACAAGATAAAAATATAAAAAAAAA AAATTAAACCCTAATATTTTCAACTCTTCCTCCACTCTAGCTACCAGCCGTTTTTACCATCTTCCTCTCCTCTCTGATCT TTTCTGCTCTCCACCACCATCACCTTCTTTTTTTTCCTCTTCTCCGGCCATCTCTGCGGCTCTCCTCTCTCCGCCGCCAT CACTTTCTTCCTTTTCTTCTCCGATTCTTTTCTTTTATGCACTTCTCCGGCCACCACCTCCGCCCCTCTCTTCTTCTTCT TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGGCTCTCTATTTTCTACACCAACCTCCTCTGCCACACTCCGCCCT CTCCAACCCTTCAACCTCCCTTAAATCATCAAAAACCTCACATTTCTCCTTGAAATCCGGCATCCCCGTCACTTCCTGTC ATCAACTTCGCCAGATCGGAGCAAAGGTGATTCCTTTTCCACCAGATCGGACCAAAGGTGGCTCCTTTTCTACTTGATCG GAGGAAATAAGGATTTTTTTCACACATGCAATCGATTTGAGGTATGTTTTTGCTGTTCCTTTTTCTTTTCTATTGTTTCT TTTACTCTATTTCTAAAACCCTCTCATCTCCCAACCAGATCGGAGCAATACTGCAAGACTGGAGATTCTCAATCAAGATC AAGCTTCTGTTTTTTTATTTTGTTTTTTTTATGTAATAGTTCAAAAATTTCCCTCTTCTATTATGCAGTTTTTGTGTTTT GTTATGTATAAAGAATTTATAAATTCGTAATAAATTTTATTTTCATTTTGTGTTCTAAAAGAAATATCAACAGAACCAGA GCCTTTGATCAAAGCTTCCACGGTCTCTGGGTCTTGTTCAAGCTATATGATTCCATAAATGAATATTAAGCATTCAATCT GGTGGATTCTGGAAGATGAAGAAGGAGAGGAAGAAAGTGGACTGATATCATGGAGAGTTTTTGGTTGGTTCGGTTCTGGG TTCCACGGCGGCAGGGATGTGGAGGTTGAAGGTGAGGGTGGTTCTAGGTCTGATGGGGAAGGGGGAAGATTATGGTGGTA TTATAATTCTACCCTTTTAGTAGAAATTAAATCTTGACCATCCATCTAAAGAATATTCTTATATTCTAAGATCCAATGGT GATTAGTGATGGTCCACCGGTGGACCAAAAACAAAGTTGCCCACCCTAGTGGGCACCTAAAATTTATATAAAATGTCAAA TAAAAAGTTATATTTTATATAATATATTAAGTCTCTTAAAATTCTTGTAATAAAAAGGCTCTTTTAACATTTTCGGCTTA GGTCCCAAAATGTCTGTACACCTCTTTGGGAGAGGTACAAGAAGAGAGAA
CDS sequence (LotjaGi1g1v0490100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAAGATGGTTTTGAGTAGCCGAGTTTTCATTGCTCGTGTTATTGTTGGTTTCTTTCTGCTGATTACCTGTGGCAT GACCTATGGGACTGAAAGTGATATCTCCTGCTTGAAAAGTGTGAAGGCTTCACTTGAAGACCCTTACAATTATTTGCAAT CCTGGAATTTCGAACACAAGGCAGAAGGGTTTATCTGCAAGTTTACCGGGGTCGAATGTTGGAATCTTCTTGAGAATAGG GTCTTGAATCTCAAACTGTCCAACATGGGACTCAAGGGCCATTTCCCTCGTGGCATTCGAAATTGCTCAAGCTTAACAGG ATTGGATTTGTCAAATAACAGGCTCTCTAAAACCATTCCAGAAGATATATCTACCCTTCTCACCTTTGTGACATCCCTTG ATCTATCTTCAAATGACTTCACTGGGGCAATTCCTGTGTCCCTTGCAAACTGTTCCTATCTTAATACCATCAAACTTGAC CAAAACAAACTCACTGGTCAAATTCCTGAAGAATTAACTCAGCTCCAGCGGCTCAAGTCATTTTCTGTTTCCAATAATTT TTTGACAGGGCGAATTCCGACATTCAGATGCGGTGTAGCTTCAGCGGACAGTTATGCAAATAATTCAGGCCTCTGTGGTG CTCCCTTGGATCCTTGCAGGGCTTAG
Protein sequence (LotjaGi1g1v0490100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMKMVLSSRVFIARVIVGFFLLITCGMTYGTESDISCLKSVKASLEDPYNYLQSWNFEHKAEGFICKFTGVECWNLLENR VLNLKLSNMGLKGHFPRGIRNCSSLTGLDLSNNRLSKTIPEDISTLLTFVTSLDLSSNDFTGAIPVSLANCSYLNTIKLD QNKLTGQIPEELTQLQRLKSFSVSNNFLTGRIPTFRCGVASADSYANNSGLCGAPLDPCRA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 14 | 14 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 12 | 12 | - | – | |
| Phobius | 1 | 30 | 30 | - | – | |
| TMHMM | 12 | 31 | 20 | - | – | |
| Phobius | 15 | 25 | 11 | - | – | |
| PANTHER | 19 | 220 | 202 | 1.4E-93 | – | |
| PANTHER | 19 | 220 | 202 | 1.4E-93 | – | |
| Phobius | 26 | 30 | 5 | - | – | |
| Gene3D | 27 | 95 | 69 | 7.9E-8 | ||
| SUPERFAMILY | 31 | 200 | 170 | 8.5E-30 | – | |
| Phobius | 31 | 221 | 191 | - | – | |
| Pfam | 32 | 74 | 43 | 2.5E-6 | ||
| Gene3D | 96 | 221 | 126 | 2.4E-36 | ||
| ProSiteProfiles | 104 | 126 | 23 | 7.011 | ||
| Pfam | 130 | 186 | 57 | 1.9E-6 | ||
| ProSiteProfiles | 153 | 175 | 23 | 4.724 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0490100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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