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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0490400 |
| Transcript ID | LotjaGi1g1v0490400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Formin-like protein; TAIR: AT3G25500.1 formin homology 1; Swiss-Prot: sp|Q9SE97|FH1_ARATH Formin-like protein 1; TrEMBL-Plants: tr|A2Q5W8|A2Q5W8_MEDTR Formin-like protein; Found in the gene: LotjaGi1g1v0490400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:100390508..100395891) extracted from Lotus japonicus Gifu genome v1.2.
CATAAATTCAACCTTTTCAGAAAAACAAAGCAGCACACTACAAAACAAACATTGAGACACAAACTCTCCCTGTTCTTCTG CTTCCTCAGTCCCTCTCTCTGTGACAGAATCCCCCACTAAAATCTCCTCCCATTACTGCATCTCAAACTCAGCCTCATTC CAATTTCACACCAGAAAAATGCTAACCCTCTTGTTCTCCTTGTTCTGTTTCCTCTTCTCCTCCAAAACTTTTGTACCATC CACCACCATAACCACCGCCACCACCACCAAAATCACCACCAGAAGAATCCTCCATGAACCCTTTATGCCATTGAACACCC AACCTCCATCTGAACCACCAAAACCACCACCACATCACCCTAACTCCCCTTCAACCCAAATCCCCAAACACCCATTTTCC ACCACCACCCCAGCCTCCACCACCACCCCAACCACAACAAATGACAACCAAGACCAGTCCCCATTTTTCCCAAATTACCC TTCTACCCCTACCCCTCCCCCTCCTTCTCCCATCACCTTTGCTTCCTTCCCAGCCAACATCTCCTCTCTTGTCATCCCTC ACTCTTCCCAACCCACCACCTCTTCCAACAAACACCTCCCCGTCGCCCTCTCCGTCACCGCCTGCGCCGCCGTCGCTGTC GCCGTCGTCGCCTTCATCTACTACCGCCGGCGCGTCCGAAACCGCCGCGACGCCGCCGACAGCAAGGCCTTCAGCTCCGA CAGCAGCTTCGGACTGTTCCCGCACAATGCCGACATTGGAGCCCGCAGCTCCGAGTTCCTCTACCTCGGCACCGTCGTGA ACTCGCGTGGAATCGACGACGCTCCACGTGGCGGCGGCATGGCTGAGACCCGGAGAATGGAGTCGCCGGAGCTCCGGCCT CTTCCGCCGCTTGCACGTCTCCCTGCGCCTCCGTTGCCTGCCCATAGTGACGCGGGTTCGGAGGAGGAAGACGAAGAGTT TTACTCGCCAAGAGGGTCATCCTTGGGTGGCCGTGAGAGCTCCATCGGAACAGAATCAGGTTCCCGGCGAGTGTTCTCCG CCGTTTCCGGCGAGAATTTCGCCGGCAGAACCTCCAGCTCGCGCTCCTCTTCCTCCTCTGTTTCTCCAGAACAGTCTCAT TCCATCACCCTCTCGCCGCCGGCGAGTTTTAGTCCCCGGAGAAGACAATCAAAGTCACCGGAAACCACCCCACCCCACAA TGCAGAACTAGTCTCATCATCAACTCACAACCAGAACGTTCAATCCTCTTCATGTTCTTGCTCTTCTTCGTTTTCTTCAT CACACTCAACGCCAGAGAGAGATTCTGTAGAAGAAGATACTCACTCTCCTTCAATCTCTCAACATTCCTCATCACCTAAC AAAATTCTGGAGAAAAATCCAAATGGGTCATCAGAAGAGAAGATTCTGGAGAGTAATGAAGATCCATCACTATCACTGAA GTTTCATTCAGAACAAGAACTACTAAGGCTATCTAATGCTTCTAGTGAAAGTGGAAACTCTGTGTCTTCATCTTCAGCTT TTTCTCTACCTTCTTCGCCGGAGAAGATGGTGCACCATCACAGTTTTGATCAGTCTCCGAGAATATCAAGTGTCTCTGAC AGGTTAAAGCTACCGGGGTTGTCATCACTGCCTCTGTCACCCACCCTGCTTTCATCACCGGAAACTGAAAGAGGTTTCAT TGGATTTTTCAATGCTGTGCCTCAGAGGAAACAATGGGAAATTCCTGTGTTGTCAACTGCATCTGTTGACAATGTTGTGG ATCAAACTGCAGGGTTTCCGGTTCCTCCACAGAGGAAACAATGGGAGGTTCCAATTCTTTCAACCCGGGTTGCTCCATTA CATCCACTGCCGCCACCACCGCCTCCTCCTCCGCTGCAGCAGCAGCGGAGACAGTGGGAAACCCCACCTCCCTTGAAGGC TGTTGGGGAACCCATTTGGGGACCGCCGGAGTTAATGCCTCCTTCCAGGCCTTTTGTGTTGAAAAAACCAGCAACCAATG TTTCTCCTGTTGAGTTGCCATTGCCACAGAGTTTGAGAGAAGCTGAAGAGCCCTTGAAACCCAGGTTGAAGGCCCTGCAT TGGGACAAAGTGAGAACAAGCTCTAGTCGCGAAATGGCGTGGGATCAGCTGAAGTCGAGCTCGTTTAGGTAAGATTTCTT AGTTATCATCATGATGGTCTTCAATGTTTATTAGTTATTTAGTTTGTGTTCAAATTATATGTTCTGGTAGCTTTTTGAGC TAGCTCAATTGATACAAGACTCATGTGCCCATGGTACTTAGCCCTCAGTTCTTAAATTATTCGGTCGAAGGGACAAGGAA ATGCTCTACGTGTACCTTTGCGGGGCAAACCTGTCCCGAGGTATCCAGTTAAAGCACACAGTTAAAGCACACATCTTGGG GGTTACATTCCTCCGAACAAAATGCTACTAAATTTTAAAACAAAAAGACCCTTAGCCTTTTAGTTATCTCTTAGTCATTT CAGTATTCCATTGAGATTGGATTTAAACAAATCATTAAGGTGTTTTTGTTCAAATTTTGATATAAATCTTGAATTGAGTT TAGCCATTATGTTTTTGTTCAAACATAATTCCATTGTTTTTGTTCAAATTTATCTTGAATTCTTCACCACAATTTTAGAG GGAGACTATGGTTATAACTTAGAAGTTATGAATTGTGAGTTGCACCTAGTAGTTGACATTTGACAATTCTTGTGTATGTG TTGCAATTAGTGTTCTTAAACTAAGCACAGTGAATTGGGTTGGCTGCAGATTGAATGAGGAAATGATTGAAACATTGTTT GTCAACACAACAAACCAGAAACCCAAGGCTGCTACTCCACGCTCTGTTCTTCCCCCACAAAATCAAGAGGACAGAGTACT TGATCCTAAAAAGTCTCAAAATATTGCGATCATGCTCAAAGCTCTTAATGTCTCTACAGAAGAAGTGTGTGAAGCACTTT TAGAAGGTATTTTCTCATTCCGACCTGAGGTTATGACTTTATTTTGTCCGGTTTGTGGTTGATCGGTAGTTATTGGTTGG ACCTGTAATTGAACTACATCTCGTACACACTGGGGAAATAATCAAGGAGGAAGAGGACAAATATGCAGTATAGTAAATCC AGTCCATTATTATGTATTTTTTACAGCCTCTTCTGTTACAGTGGCATGAACTTGTGTATACTACAATGTTAAAATATATT GATGAGATTTGTAATAATAAAGATAAATGTCACGAAGATCATATTTAAGTGATGTTACAGTCTTTGTGCACAGGAGTTTG CTGATTGTCTGTAATTCTAACCCCTGCCTGCTACTTTATTTAATACCGATGATGCGACTGAAATGATTTACCTTTGTACA GGTAAAACTGATACACTCGGAGCAGAACTACTTGAAAGCTTGTTAAAAATGGCACCAAGCAAGGAAGAAGAGCGTAAACT GAAGGAACATAAAGACGACTCATCAATCAAACTTGGTCTGGCTGAGAAATTTTTGAAGGCTGTTCTTGAAGTACCTTTCG CATTTAAAAGAGTTGCAGCAATGCTTTACATGGTCAATTTTGAGTCTGAAGTGGAGTATCTTAGGAAATCATTTCGAACT CTAGAGGTAACCAGTCACACTTTCGATGGCTTACTCATTTCTTGAGGATTATTCTTACTGATTTGAAGGTGAAATTTTGA TGTTCGGAGAGATTCTATTTTTTATGCAAGATTTGTTGAAAGTTTTATAAACATGAGAAGTTTTTATTACTTGACTTGAA GTTATTTCTTTCAGTTATGATAGTCTTGCCTTATGCATAATTTTTTTTTTTTATCAAAAAGGTGGGCGTGTATGCTATCT TAGTTTTGGTTATTTTTTAACAATTTATCCCATTTAAGTGTCAATACCAGCATAAAGTTACAATTTGCTCATGTTTCCAA CCCCAAGGGGTTGGTCGGGTGGAGCATGAGAGGGCCCCGTATTTGACAGGTTGCAGGTTGGAGCCCCAATTCATCCCCAT TGGGGTGAGGTAAATGTCTACTGCAAGTGCTCTTTGAGCCTGACAGCTTTCCCTGCCTTAGATTGGGGCGCCATCCCCTC TCCTCAAATTTTGTTATCCAAAAATATTTGCTCCTGTCTCTTGTGTGTATTTCTTAGGATGCTTCTCTTGTATGCCATGA GTTCTAGTTTTGATCCATCTTATGGTTGGTGCTTTTGCAGGCTGCGTGTGAAGAGTTGCGAAATTGTAGAATGTTCTTGA AGCTTCTACAGGCTGTACTTAAAACTGGGAACCGCATGAATGTGGGGACAAACCGCGGCGATGCAAAGGCCTTCAAACTT GATACACTTCTCAAGCTGGCTGATGTCAAAGGGGCAGATGGGAAAACCACTCTACTGCATTTTGTTGTGCAGGAAATTAT TCGAACTGAAGGTGCTCGTAGTCTCTCTGGTACTAATCAAACTCCAAGCTCTACTTTGAGTGAAGACAAAGACGCAAGGT GCAGGAAGCTTGGCCTACAAGTTGTATCTAGTCTGAGCACAGATCTATCAAATGTGAAGAAGGCTGCTACAATGGATTCT GAAGTTCTCAGCAGCGATGTCCTTAAACTTTCCAAAGGAATTGCGAACACTGCAGAGGTTGTTCAGTTAAACCAAACTGT GGCGGGATCAGATGAAAGGACTCAGAAATTTGCTGCATTCTTGAACAATTTTATTAGAATGGCTAAGGAGGAAACTCTGA AGATTCAAGCCCAAGAAAATGTTGCTTTGTCCCTTGTGAAGGAGATTACTGAGTATTTTCATGGGGACTTGGCAAAGGAA GAAGCTCATCCATTCAGAATCTTCATGGTTGTAAGAGACTTTTTAGCGGTTCTTGACCGGGTCTGCAAAGAAGTTGGGAT CATAAATGAGAGAACCATGGTTAGTTCAGCTCATACATTTCCTGTTCCAGTTAATCAAATGCTTCCAGAACCCCTTCCTG GATTGCATAAAAGGCAAGAGTGTAATAACTAATAACTCTTCAGATGATGAATGTTCATCACCCTAGCCATATAAGTGAAT TCTTGACTGCATCTTCTCCTAAGAACAACCTGGGATCAGGTGATTTTGAGACTGGTAGGAACCTACATGGTCTGGCAAAA AATCTTTGTAAAAGGTTTCAGGCTTTCAGCTTATGTAGATTATTATTATATAGATAAAAAGATACAAGATTTTTTTCGGA AGAAAATAGTATATGTAAGATAAGGTTTTTATAGTAGCATGTAAATAGCTTTTTTAATTAGAGAGAAGTTTTTCTAGCAA TTGGAATTATCCTACAGTCAAACTTCAATCGGAATATTTTTATCTGTATTAAAAGGGTTTTCGGAGAGAATATTTTTATC TTTATTAAAAGGGTTTTACCAAAG
CDS sequence (LotjaGi1g1v0490400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTAACCCTCTTGTTCTCCTTGTTCTGTTTCCTCTTCTCCTCCAAAACTTTTGTACCATCCACCACCATAACCACCGC CACCACCACCAAAATCACCACCAGAAGAATCCTCCATGAACCCTTTATGCCATTGAACACCCAACCTCCATCTGAACCAC CAAAACCACCACCACATCACCCTAACTCCCCTTCAACCCAAATCCCCAAACACCCATTTTCCACCACCACCCCAGCCTCC ACCACCACCCCAACCACAACAAATGACAACCAAGACCAGTCCCCATTTTTCCCAAATTACCCTTCTACCCCTACCCCTCC CCCTCCTTCTCCCATCACCTTTGCTTCCTTCCCAGCCAACATCTCCTCTCTTGTCATCCCTCACTCTTCCCAACCCACCA CCTCTTCCAACAAACACCTCCCCGTCGCCCTCTCCGTCACCGCCTGCGCCGCCGTCGCTGTCGCCGTCGTCGCCTTCATC TACTACCGCCGGCGCGTCCGAAACCGCCGCGACGCCGCCGACAGCAAGGCCTTCAGCTCCGACAGCAGCTTCGGACTGTT CCCGCACAATGCCGACATTGGAGCCCGCAGCTCCGAGTTCCTCTACCTCGGCACCGTCGTGAACTCGCGTGGAATCGACG ACGCTCCACGTGGCGGCGGCATGGCTGAGACCCGGAGAATGGAGTCGCCGGAGCTCCGGCCTCTTCCGCCGCTTGCACGT CTCCCTGCGCCTCCGTTGCCTGCCCATAGTGACGCGGGTTCGGAGGAGGAAGACGAAGAGTTTTACTCGCCAAGAGGGTC ATCCTTGGGTGGCCGTGAGAGCTCCATCGGAACAGAATCAGGTTCCCGGCGAGTGTTCTCCGCCGTTTCCGGCGAGAATT TCGCCGGCAGAACCTCCAGCTCGCGCTCCTCTTCCTCCTCTGTTTCTCCAGAACAGTCTCATTCCATCACCCTCTCGCCG CCGGCGAGTTTTAGTCCCCGGAGAAGACAATCAAAGTCACCGGAAACCACCCCACCCCACAATGCAGAACTAGTCTCATC ATCAACTCACAACCAGAACGTTCAATCCTCTTCATGTTCTTGCTCTTCTTCGTTTTCTTCATCACACTCAACGCCAGAGA GAGATTCTGTAGAAGAAGATACTCACTCTCCTTCAATCTCTCAACATTCCTCATCACCTAACAAAATTCTGGAGAAAAAT CCAAATGGGTCATCAGAAGAGAAGATTCTGGAGAGTAATGAAGATCCATCACTATCACTGAAGTTTCATTCAGAACAAGA ACTACTAAGGCTATCTAATGCTTCTAGTGAAAGTGGAAACTCTGTGTCTTCATCTTCAGCTTTTTCTCTACCTTCTTCGC CGGAGAAGATGGTGCACCATCACAGTTTTGATCAGTCTCCGAGAATATCAAGTGTCTCTGACAGGTTAAAGCTACCGGGG TTGTCATCACTGCCTCTGTCACCCACCCTGCTTTCATCACCGGAAACTGAAAGAGGTTTCATTGGATTTTTCAATGCTGT GCCTCAGAGGAAACAATGGGAAATTCCTGTGTTGTCAACTGCATCTGTTGACAATGTTGTGGATCAAACTGCAGGGTTTC CGGTTCCTCCACAGAGGAAACAATGGGAGGTTCCAATTCTTTCAACCCGGGTTGCTCCATTACATCCACTGCCGCCACCA CCGCCTCCTCCTCCGCTGCAGCAGCAGCGGAGACAGTGGGAAACCCCACCTCCCTTGAAGGCTGTTGGGGAACCCATTTG GGGACCGCCGGAGTTAATGCCTCCTTCCAGGCCTTTTGTGTTGAAAAAACCAGCAACCAATGTTTCTCCTGTTGAGTTGC CATTGCCACAGAGTTTGAGAGAAGCTGAAGAGCCCTTGAAACCCAGGTTGAAGGCCCTGCATTGGGACAAAGTGAGAACA AGCTCTAGTCGCGAAATGGCGTGGGATCAGCTGAAGTCGAGCTCGTTTAGATTGAATGAGGAAATGATTGAAACATTGTT TGTCAACACAACAAACCAGAAACCCAAGGCTGCTACTCCACGCTCTGTTCTTCCCCCACAAAATCAAGAGGACAGAGTAC TTGATCCTAAAAAGTCTCAAAATATTGCGATCATGCTCAAAGCTCTTAATGTCTCTACAGAAGAAGTGTGTGAAGCACTT TTAGAAGGTAAAACTGATACACTCGGAGCAGAACTACTTGAAAGCTTGTTAAAAATGGCACCAAGCAAGGAAGAAGAGCG TAAACTGAAGGAACATAAAGACGACTCATCAATCAAACTTGGTCTGGCTGAGAAATTTTTGAAGGCTGTTCTTGAAGTAC CTTTCGCATTTAAAAGAGTTGCAGCAATGCTTTACATGGTCAATTTTGAGTCTGAAGTGGAGTATCTTAGGAAATCATTT CGAACTCTAGAGGCTGCGTGTGAAGAGTTGCGAAATTGTAGAATGTTCTTGAAGCTTCTACAGGCTGTACTTAAAACTGG GAACCGCATGAATGTGGGGACAAACCGCGGCGATGCAAAGGCCTTCAAACTTGATACACTTCTCAAGCTGGCTGATGTCA AAGGGGCAGATGGGAAAACCACTCTACTGCATTTTGTTGTGCAGGAAATTATTCGAACTGAAGGTGCTCGTAGTCTCTCT GGTACTAATCAAACTCCAAGCTCTACTTTGAGTGAAGACAAAGACGCAAGGTGCAGGAAGCTTGGCCTACAAGTTGTATC TAGTCTGAGCACAGATCTATCAAATGTGAAGAAGGCTGCTACAATGGATTCTGAAGTTCTCAGCAGCGATGTCCTTAAAC TTTCCAAAGGAATTGCGAACACTGCAGAGGTTGTTCAGTTAAACCAAACTGTGGCGGGATCAGATGAAAGGACTCAGAAA TTTGCTGCATTCTTGAACAATTTTATTAGAATGGCTAAGGAGGAAACTCTGAAGATTCAAGCCCAAGAAAATGTTGCTTT GTCCCTTGTGAAGGAGATTACTGAGTATTTTCATGGGGACTTGGCAAAGGAAGAAGCTCATCCATTCAGAATCTTCATGG TTGTAAGAGACTTTTTAGCGGTTCTTGACCGGGTCTGCAAAGAAGTTGGGATCATAAATGAGAGAACCATGGTTAGTTCA GCTCATACATTTCCTGTTCCAGTTAATCAAATGCTTCCAGAACCCCTTCCTGGATTGCATAAAAGGCAAGAGTGTAATAA CTAA
Protein sequence (LotjaGi1g1v0490400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLTLLFSLFCFLFSSKTFVPSTTITTATTTKITTRRILHEPFMPLNTQPPSEPPKPPPHHPNSPSTQIPKHPFSTTTPAS TTTPTTTNDNQDQSPFFPNYPSTPTPPPPSPITFASFPANISSLVIPHSSQPTTSSNKHLPVALSVTACAAVAVAVVAFI YYRRRVRNRRDAADSKAFSSDSSFGLFPHNADIGARSSEFLYLGTVVNSRGIDDAPRGGGMAETRRMESPELRPLPPLAR LPAPPLPAHSDAGSEEEDEEFYSPRGSSLGGRESSIGTESGSRRVFSAVSGENFAGRTSSSRSSSSSVSPEQSHSITLSP PASFSPRRRQSKSPETTPPHNAELVSSSTHNQNVQSSSCSCSSSFSSSHSTPERDSVEEDTHSPSISQHSSSPNKILEKN PNGSSEEKILESNEDPSLSLKFHSEQELLRLSNASSESGNSVSSSSAFSLPSSPEKMVHHHSFDQSPRISSVSDRLKLPG LSSLPLSPTLLSSPETERGFIGFFNAVPQRKQWEIPVLSTASVDNVVDQTAGFPVPPQRKQWEVPILSTRVAPLHPLPPP PPPPPLQQQRRQWETPPPLKAVGEPIWGPPELMPPSRPFVLKKPATNVSPVELPLPQSLREAEEPLKPRLKALHWDKVRT SSSREMAWDQLKSSSFRLNEEMIETLFVNTTNQKPKAATPRSVLPPQNQEDRVLDPKKSQNIAIMLKALNVSTEEVCEAL LEGKTDTLGAELLESLLKMAPSKEEERKLKEHKDDSSIKLGLAEKFLKAVLEVPFAFKRVAAMLYMVNFESEVEYLRKSF RTLEAACEELRNCRMFLKLLQAVLKTGNRMNVGTNRGDAKAFKLDTLLKLADVKGADGKTTLLHFVVQEIIRTEGARSLS GTNQTPSSTLSEDKDARCRKLGLQVVSSLSTDLSNVKKAATMDSEVLSSDVLKLSKGIANTAEVVQLNQTVAGSDERTQK FAAFLNNFIRMAKEETLKIQAQENVALSLVKEITEYFHGDLAKEEAHPFRIFMVVRDFLAVLDRVCKEVGIINERTMVSS AHTFPVPVNQMLPEPLPGLHKRQECNN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 19 | 19 | - | – | |
| SignalP_EUK | 1 | 17 | 17 | - | – | |
| Phobius | 2 | 13 | 12 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 14 | 21 | 8 | - | – | |
| PANTHER | 21 | 1065 | 1045 | 0.0 | – | |
| PANTHER | 21 | 1065 | 1045 | 0.0 | – | |
| Phobius | 22 | 139 | 118 | - | – | |
| MobiDBLite | 42 | 114 | 73 | - | – | |
| MobiDBLite | 46 | 65 | 20 | - | – | |
| MobiDBLite | 66 | 98 | 33 | - | – | |
| MobiDBLite | 99 | 114 | 16 | - | – | |
| TMHMM | 140 | 162 | 23 | - | – | |
| Phobius | 140 | 162 | 23 | - | – | |
| Phobius | 163 | 1067 | 905 | - | – | |
| MobiDBLite | 212 | 471 | 260 | - | – | |
| MobiDBLite | 268 | 371 | 104 | - | – | |
| MobiDBLite | 383 | 400 | 18 | - | – | |
| MobiDBLite | 401 | 421 | 21 | - | – | |
| MobiDBLite | 426 | 452 | 27 | - | – | |
| MobiDBLite | 553 | 571 | 19 | - | – | |
| MobiDBLite | 553 | 573 | 21 | - | – | |
| SUPERFAMILY | 556 | 1032 | 477 | 5.49E-96 | – | |
| ProSiteProfiles | 620 | 1048 | 429 | 53.639 | ||
| SMART | 620 | 1037 | 418 | 1.1E-137 | ||
| Pfam | 624 | 1022 | 399 | 2.2E-113 | ||
| MobiDBLite | 672 | 686 | 15 | - | – | |
| MobiDBLite | 672 | 694 | 23 | - | – | |
| Gene3D | 686 | 1038 | 353 | 2.2E-85 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0490400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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