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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0491000 |
| Transcript ID | LotjaGi1g1v0491000.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AT hook motif DNA-binding family protein; TAIR: AT4G17800.1 Putative AT-hook DNA-binding family protein; Swiss-Prot: sp|O23620|AHL23_ARATH AT-hook motif nuclear-localized protein 23; TrEMBL-Plants: tr|I1L656|I1L656_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0491000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:100457395..100458908) extracted from Lotus japonicus Gifu genome v1.2.
GTGAGAATAGCTATGCAAGTTCGACCACTTTATAATTTGTCACACACTCTCTCTCTTTCTCTTTACCCTTCCAACCTCAT CTCATTCGGTTCTCTCTGCAGTACTCAATTGATCCCTTTGTTTTCTATTCGTTTCTGAGGTTTGAATCATTGGGCACTCC TATTATAACTTCCTTTTAAAAACCCCTGTACATAATTTAATTCTTCATATTACTATTCTCGTTTTTTTCTATTACATATT TTAATCATACTATATAATTCTTTTTTTCATTCCCTTTTGGTTTGTGTTTATACTTGTTTAGAGCTTTGTGTTTATGGCCG GCATAGACTTGGGTTCAGCATCACACTTTGTTCATCGCCTTCAACGCCCTGACCTTGAAGATCATGATGAGAACCAAGAC CAAGATGGAAACAACAACAGCAATGAAGGGCTTGACCTAGCTACACAAAATCAAGGTCCTGGTGATGTTGTCGGTCGGAG GCCAAGGGGAAGACCACCAGGATCAAAGAATAAGCCTAAACCACCCGTGATCATCACAAGGGAGAGTGCAAACACGCTTA GGGCTCACATCCTTGAAGTCAGCAGTGGTTGTGATGTGTTTGACTCAGTCGCTACCTATGCAAGGAAACGGCAGAAAGGG ATCTGTGTTCTCAGCGGCAGTGGCACCGTCACCAACGTCACACTACGGCAGCCAGCTGCCGCCGGCGCTGTGGTGACACT GCACGGAAGGTTTGAGATATTGTCCTTATCAGGATCGTTCCTCCCACCTCCAGCTCCACCAGGTGCCACAAGTTTGAGTG TGTTCCTTGGTGGGGGTCAAGGTCAGGTTGTGGGAGGAAATGTTGTTGGCCCTTTGGTGGCTTCTGGGCCAGTTATTGTG ATTGCTTCATCATTTACTAATGTTGCGTATGAGAGGTTGCCCTTGGAGGAAGATGAATCTCTTCAGATGCAACAAGGTCA ATCATCTGCTGGTGGCGGTAGTGGCAGTGGTGGTGGTGGAGGAGTTAATAACTCTTTCCCTGACCCATCTTCAGGGCTTC CGTTCTTCAATTTACCCCTAAACATGCCTCAATTACCAGTTGATGGTTGGGCTGGAAACTCCGGTGGAAGGCAATCTTAT TGAGTTGATCTTCGGGGCACAAAGGTGAGTAGTTGAATCTTAACATCTATATATATATATATATATATATATATATATAT ATATATATATATTAATTTTCTGGTGAATTTCCTTCTTTCCTTTGAATTGTTTGTGAAGAAGTACTGATTGTTACTGAAGT TCGTCTTCTTTTGCTAGGAATGTTGTAAGAACTCTTTTTAGGAACAATTGTAAAACGTTTGCCCTTTGTTGTTGTTCTTG TTGTTAGACTATAGTTTTGGTTGTGCATTGACCTCAAGTTGAATAAATCAGACTCAATAACATATTTTTTGAACTTTGAA GTTGGGTTTTAGATGATATGTTCTTCTCCGTCTCATAAATTTGTTTCCATGGTTTAGTTTAAAGTAGAGCAGAT
CDS sequence (LotjaGi1g1v0491000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGGCATAGACTTGGGTTCAGCATCACACTTTGTTCATCGCCTTCAACGCCCTGACCTTGAAGATCATGATGAGAA CCAAGACCAAGATGGAAACAACAACAGCAATGAAGGGCTTGACCTAGCTACACAAAATCAAGGTCCTGGTGATGTTGTCG GTCGGAGGCCAAGGGGAAGACCACCAGGATCAAAGAATAAGCCTAAACCACCCGTGATCATCACAAGGGAGAGTGCAAAC ACGCTTAGGGCTCACATCCTTGAAGTCAGCAGTGGTTGTGATGTGTTTGACTCAGTCGCTACCTATGCAAGGAAACGGCA GAAAGGGATCTGTGTTCTCAGCGGCAGTGGCACCGTCACCAACGTCACACTACGGCAGCCAGCTGCCGCCGGCGCTGTGG TGACACTGCACGGAAGGTTTGAGATATTGTCCTTATCAGGATCGTTCCTCCCACCTCCAGCTCCACCAGGTGCCACAAGT TTGAGTGTGTTCCTTGGTGGGGGTCAAGGTCAGGTTGTGGGAGGAAATGTTGTTGGCCCTTTGGTGGCTTCTGGGCCAGT TATTGTGATTGCTTCATCATTTACTAATGTTGCGTATGAGAGGTTGCCCTTGGAGGAAGATGAATCTCTTCAGATGCAAC AAGGTCAATCATCTGCTGGTGGCGGTAGTGGCAGTGGTGGTGGTGGAGGAGTTAATAACTCTTTCCCTGACCCATCTTCA GGGCTTCCGTTCTTCAATTTACCCCTAAACATGCCTCAATTACCAGTTGATGGTTGGGCTGGAAACTCCGGTGGAAGGCA ATCTTATTGA
Protein sequence (LotjaGi1g1v0491000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGIDLGSASHFVHRLQRPDLEDHDENQDQDGNNNSNEGLDLATQNQGPGDVVGRRPRGRPPGSKNKPKPPVIITRESAN TLRAHILEVSSGCDVFDSVATYARKRQKGICVLSGSGTVTNVTLRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATS LSVFLGGGQGQVVGGNVVGPLVASGPVIVIASSFTNVAYERLPLEEDESLQMQQGQSSAGGGSGSGGGGGVNNSFPDPSS GLPFFNLPLNMPQLPVDGWAGNSGGRQSY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 269 | 269 | 3.4E-145 | ||
| PANTHER | 1 | 269 | 269 | 3.4E-145 | – | |
| MobiDBLite | 1 | 73 | 73 | - | – | |
| PIRSF | 4 | 264 | 261 | 5.6E-103 | ||
| MobiDBLite | 15 | 31 | 17 | - | – | |
| ProSiteProfiles | 79 | 215 | 137 | 38.878 | ||
| SUPERFAMILY | 79 | 211 | 133 | 5.49E-33 | – | |
| Gene3D | 82 | 214 | 133 | 3.5E-9 | – | |
| CDD | 83 | 165 | 83 | 5.03345E-22 | ||
| Pfam | 83 | 196 | 114 | 2.6E-29 | ||
| MobiDBLite | 207 | 247 | 41 | - | – | |
| MobiDBLite | 209 | 240 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | AT DNA binding | Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA). |
Expression pattern of LotjaGi1g1v0491000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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