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LotjaGi1g1v0491400.1

Overview

Field Value
Gene ID LotjaGi1g1v0491400
Transcript ID LotjaGi1g1v0491400.1
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description ATP synthase subunit beta; TAIR: AT4G38510.5 ATPase, V1 complex, subunit B protein; Swiss-Prot: sp|Q9SZN1|VATB2_ARATH V-type proton ATPase subunit B2; TrEMBL-Plants: tr|I1NF84|I1NF84_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0491400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:100484460..100491597) extracted from Lotus japonicus Gifu genome v1.2.

TTAATAATCTTTATTCCAATCATTATTTTAAAGAAAAAAAATATATCTAATAATAATCATAGCCTGTTTCTAATCCCAAA AAAACTAATTCACTTATCAACTTTGCAATCTAGAATTTTATTTTCAAATAATAAAAAACAACATTTTAACTATTATCTGT CCCTGACAAATAATTGTTATTTCCTTGATGGTTCCTGCATTTGTTTGGTCCAACCATTAGATCTGTGTCACGAACCCAAC AACATCAACATCAACATCAACATCAACATCTCTCTCTTCTTCCTCAGATCAATCACACACAGGTACGCAGTTACGCACGC ACGTTCCTTAGATCAATCAATCAATCACATCCTATGTTACTGTCTTCAATCCTATAATCTTCTGTTTTTCTCCAAACCAA ACACACCCTGATCACTGAAAATCAAGGGTCACTCACAAGTTTTGTTCACAACCCGTTTGGTTGGTTTCACCATTCCCTTT GTTGCGCCTTAATTCTTAGTGGGTATTTCACTTTTTGACTTGTAGATAGTTCTTGCTTCAAGTTCTCGAAATGGGTAAGG CTCAAAACGTTGTTGATGTTGAGGATGGAACCTTGGAGATTGGAATGGGTAAGTATCGTTTCCCTTTACCCTTTTCTTAG TTTTTTCATTTGGGGTTGTTGGTTTATACGTTAATGGTTGATGAATCGAATGACCATGCTTGGTGCTTGTTGTCATCATG GGGATAAAAAAATATTTGTTTGAAGGGTTATTGGATTGATCAGTTCTTGAAGTTGATTACTTGTTGAATTGTGTGTTTAT GTTGCAGAGTACAGAACTGTGTCTGGAGTTGCTGGACCATTGGTTATTCTTGATAAAGTTAAGGTATTGGCCATGTCATA TACTTTTCTCACTGCCATGCTTAGTTCATGCTCTAAAGCTGTGAATTTTTCTCAATGTTGAGAAGATTTTAACACTCAGT ACCCTTTTATAAAACTGATGGATTAATGACAGTTTTTGTTGAAAATTAAATAGTATGGATAACTAATCATACTTGAATAT GTCTCCTGATTTGAGTTGAAGGAGTACAGAGTACTTGGTCCACCGGGAGGACTGTAAAATGTTCTCTCAATGAGGATGTC CTGCTCCTGTATGGTATGACTAAATCTAATGCTGATTTACTGTATCAGGGACCAAAATTTCAAGAGATTGTTAATATTCG CTTAGGGGATGGTACCACTAGGCGTGGACAAGTTCTAGAAGTTGATGGTGAAAAAGCTGTTGTTCAGGTGAACCTGTAGT TGCATATATCATGAAATCTTTGAGATGAATCGATGATGATGTCTTGATTTTCATTTTTCAAACATAACCAAAATATTGTA TATTCTACTGTTGTATCTCAATCTTTGGTAAGAAAAAGCCTTCAACTATTGTCTACTTTGTTCATGTAGTTGTATTGAGT TTAATAACAAATATTTCTGTCTGTGTAGTTTTATCATCTTCTCCTGCTATCACTAACAGTGGGCTTAAATATATTTACCT TTTTGTACCGTTGACCAGGTCTTTGAAGGTACATCTGGGATTGACAATAAATTTACTACTGTGCAATTTACTGGAGAGGT ATGGAATGTTTTTTTGTTATATTCTTTTGTTGCGAAGTTATTTGTAAAATTATTTATGCAAATTTTATTGAGTTTTTCAT GAATGTATCTTCTGATTGCTGACTTGGTCACAGGAATATTGTAAATTGTAATTCTAATTCTGAAGGTGTAGTACCTAAAT AATGTGTTAACTTTTAGTTAGAGTTGTATCTTGCTGTTTGGGAGTAGTTAATAACTTAATATAGAATTGGGTTAATCCAT GGCTAGTCTTTTAGTATGCTATCTTTTAAACCTTAACAATGAATAACAATCCTATCAGCATGTCTGAATTAGTTGAAAAA ACGATACAGGGTGGCTTCATTAGTATCAAAATTTCTCTGTCTTATTGTTTATGTTCTTAGGTGTTAAAAACTCCAGTATC ACTGGACATGCTTGGCCGCATATTTAATGGTTCAGGAAAACCTATTGATAATGGTCCGCCCATATTACCTGAGGCTTACT TGGACATATCAGGTATATAATTTCTTCCAGGGATATATAAATCTGTATGTTTTTTTTTGTTTTTTTTATTTATAATATTT TCCAATAATTCAGGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCAGAGGAGATGATTCAGACAGGAATATCCACAAT TGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTCTATTCTCAGCTGCTGGACTCCCCCATAATGAAATTGCTG CTCAGATATGTCGTCAAGCTGGCTTAGTCAAGCGATTAGAGAAGTCTGATAATCTTCTTGAGGTATGGCTGTTATGTTAA ATTAAATTTACTCTAATATGTTAAATGCTCCTGAATTATGAGTTTAGGTCATCATTTTCTGTATTAATACTTACCTGGTT AAGGCAAGTAGGGAGCTTGCGTCTATTCATTGCAAGTTTTCAGACTTGAACAGAAGTAGGCTTATTTGGGCGGCCTCTTG GCTATCTTGCTACCTGCTCATCCTGTTAATGCTCATTAGTCATTACACTTGCATCAGTTTTATTGAGGGTTTTAAGTGGG AGAGTTGTTATTTTTTGGTCGAATTTATTTCTAAGTACATCAAAATAATCCCTTAGTCAATAAAAATTAAGCACATTGCT TGTTTATACCTGAATTTACCAAGATTTTGTTGCTTGAATATCAGTATTATCACTCTTATAAAGTTTACATATGATGTCTG GAATGATGTCTGGAAACAGTTCTTTTGTAGATTATTAGTTACATCAACAAGTGAGGAATTTATAATGTTTACTCATTGTG AAATTTTTTATCAAGAATCAAACACTTAGTGCTTGCAATATACGAGCTACTGGTTCCATGAAAGTCAAACATGGGGGTTT TGAATCAGCTAATTTTCTGGTTGTCTACATGGGGCTTTAAAAACTCAGACTAAATTACAGTATTACTGTTACTTTACTTA CACTTCCTTGAAAATTGAAAATCAATATCAAATGGGAAAGGGAGTTTATGATATTCGGTTCCTCAATAGCATGCCATGGA GGAGCTGACAATTTACATAATTAAATTGAAAAGGCCAAACTTTTTGTTCTACCGTTTACAGCAGATCTATTCGTTCTTAT GTTGTTCCAATTAATAAATGATATTTTCTGTGTTTATTTATTTTAACTTACAAATTTTACACTTACTAAGATGAATGTGG TTTCTAACAAATTTTATCAATATGCAGGGTGGAGAAGACGACAACTTTGCCATTGTCTTTGCAGCTATGGGAGTTAACAT GGAGACAGCACAGTTTTTTAAACGCGACTTTGAGGAGAATGGCTCGATGGAGAGAGTGACCCTTTTCCTTAATCTGGTAA TGCTTACAGCCATTATGCAAGTGTTCTTTTATTCTCATCGTTGTTTTTTTCCTTAGTAATTTTTGTCCGTGTAGTTTAGA GGATAATAAAAAGTATGCCCCCCTGTCTAGTAATTATTATAACTTACAAAAAATATGAATTGATTTTTGTTGTACATTTT TCTTAGGAACTGTGGTGCCCCAGTTCATACATTCTGAAAAGGTCATTTTATCTTTAAATCTAAAATTTTGACATATATAT GTAGTAGCGATATGTCAATGATTAATACAAAATTAATCTTTTGGCTCATTAAGCCCAACCAGTGGGAGAAGTTTGATAAA GATTTCAGGAAGTACCAACACGTTAGAAAGTTTGATTAATTATTTATCACCTTACATTTTTTTAAGGATATTATCGTGTT GTAAATATCAAATCTTGATTTCATCTCCTGCATGAACAAACTGATCCTTAGAATGTTTGTTCTCATGCTGCTGTGATTTT CGCAGGCAAACGATCCTACAATTGAGCGTATCATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCATATGAA TGTGGGAAGCATGTTCTTGTTATACTCACAGATATGAGCTCTTATGCTGATGCTCTTCGTGAGGTAATATGCCTTCTACT TTAATTGTCTGAAGGAGGAAGCAAAATGAAAGGAGAAATGAGAAACCTTTTGTCCTTTATTATTCTTGTGTAACTTTAAT TTCTTCGTCTACAAGAAATGATGTAGGCTTGCATATGCTAGTTGCTTTTTCTTTTCATCGAGCATGAGAAGTAACTTCAA ATTACTTAAAACTATGTCTCCAACTATTTGATTGTCAATGAGCCTTTGATAACTTTTGGATCCTGTAGGTATCTGCTGCT CGAGAAGAAGTACCCGGTAGACGTGGGTATCCTGGTTACATGTATACAGATCTGGCAACAATATATGAACGTGCTGGAAG AATTGAGGGGCGAAAAGGCTCTATTACACAGATTCCAATTCTAACCATGCCAAATGATGGTGATCAAATACTATTAAACT TTATCAGCTATCTTCCATGATGCACTCTTCATTATGACTAATCATCTTTCTCGAACTTTTTCGGTACAGATATTACGCAT CCAACTCCTGATCTTACGGGATATATTACTGAGGGGCAGATATACATTGACAGGCAGTTGCATAACAGGCAGGTCGGTTA TATATTAGAGCCTTTGGCTATTGCAAATATTGTACCAAATGCTGGGTTTGTTACCTGAATTATGTTCAAGAGAGAATTTA GTGCACAATGTTTCCCAAAATTGGATACTTGATATTACTTTAAGAACGGCCTCCACAGTTAAGTGTGAGAAAAGAAGGGG AGCCTTGGCGCAACGGTAAAGGGCTGTTGCCATGTGACTGAGGTCACAGGTTTAAGTCCTGGAAACAGCCTCTTGTGTAA GAAACAAGGTAAAGCTGCGTACAATAGACCATGTGGTCGGACCCTTCCCCAGACCCTGTGGTCGGACCCTTCCCCAGACC CTGCGCATAGCGGGAGCTGTAATGCACCGGGCTGCCCTTTTATTACTATAAGAGCGGTAAATTGTTTGATTTTTATTGAA TGGAAGTTACATGAGAGCTTAGTTAGTCTTCCTCAACACATAAACTTTCTTTTTATCCTCTAGTGGCCTTAACAAATAAT TAGAAATGATTTCGGTATATATTTCCATTGATACATTGAAAAGTAGAATGAAATGCTGTGACTTTTCCTTCACCTGTAAG ATTATTAGAGATTTTTTTATGAAGTTTATCCATGCATTACTGCATAAAATTAAACCAGCCTTTTATTTCTGTGATCTACT CTGTTCTTGATGTATTTAAGTAGGTATCAATAAGTTTAAAGCCACTTGATAAATTTCTTACAAAATATTAGACTGAAACT TAATCTGAAATCCTTTTGTATTCACAGATATATCCACCAATCAATGTCCTTCCATCACTGTCTCGATTGATGAAGGTGAG ATTAATCTTGTTTGCTTGATATCAAGACAATTGATAAAACATTTTGACTTTGTTTACTGCTGGATGGGTGAGATGTCCCT ACCGCTTGATTCCACCCATCAAATCACCCAATAATCTAACTGAAATTCGTCAAAATTCGGACGATTTTTGCTGGTTAAAG TAACACTTTGCTTAGTAGAAAGTTAAATTATGGGGTTTATATTTTAGTGATGCATCACGGTTTCCTCTGCAGAGTGCCAT CGGTGAGGGAATGACTCGAAGGGATCATTCTGACGTTTCCAATCAGGTCTGGTTTTGTTTGCTTACCATATTGCCATTTT TGTTTCCAAATGCAATCTCATTGGTGTTATTTTGTTTCTTTTCAGCTTTATGCAAATTATGCCATTGGAAAGGATGTCCA GGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGGTCTCTACCATTGTTCTCTGTTTTTTTTTTT CAAATTGTGTTTGTCCTTTAACTCTGATAATAAACTACGTTCTTATTTTTCTTATTTACAGTTGTATCTGGAATTTTTGG ACAAGTTTGAGAGGAAATTTGTCGCCCAAGGAGCTTATGATACCCGGAACATCTTCCAGTCACTTGATCTTGCATGGACT TTGCTCCGGATTTTCCCTCGTGAGCTTCTTCATCGTATTCCTGCCAAGACTCTTGATCAATACTACAGCCGTGATGCCGG TAACTGATGATATATATTGCAAGCTCATCCAAACCTTGATCACATGCTCAATCAGCTTGTAATGATCCTCTATTGATTCA TTTCTTAGCTCTCTCACCAACCGTCCATATTTCTTCTATGTTACATATAATAAAGGTTGATTTGAGTGCCTCATATTTTT GTTTCCTCAGATATTTTGTTCTAGTGCCAATTCATTTTCTGGGGTGGTGGGAATTTTAGTTATTACCAACTTGGGATGGT GTTAATTGCATTGTGCATTTGTGGGATATTCAGTGCAGTTAATTTTTTCTTTTATTTCCCATATATGTTGCTTGTTTCAG TATCCTATTACCTTGTAATTTGATTTTATTCAGGATATTTATAAAGAGGACAGTGGTATGTAGAGGGCACTTTGATGTTT TTTGACTGTTCTATTAGTTCATTAAGTGAAATGATCTTAAATTTTGAGAAATGTATGTGCATTTATCATTGAGGTAAGGT AAGAAGCCTTATTCTTTTTGAAAGAGGAATATATTTATTGAATGAAAATGGCTTGAGACCGTAGGAAAAATAAAAAAGAG AAATATCCCAGATGATACAGATTCTATCTGAGAAGCATCCCAGATGATACAGATTCTATCAATTCCCATATAGGATGTTC TCTTCCACACCCAATCTTAGCTAGATAGTCAGCTTAAAATTAGCTTTTCTATAAATATGAACTACCCCCAAAAATCGACC TCTTGCATAATAATTTCATTCAGATTAAGATCATTTAACAGTTTTCAAGGCCTGTAAGATTTACAACCCACCAAACCAAC TGGTAGAGAGGAATTAGTACTTTTAATTATTATGTTACTCAACTGTTTGCAGAAAATTAGCGCTGTCAAGTCCACTGGAA AAGTGAATTGACCACTGTGATCCACATATCCTCCACTATTCCACTAGGATAGGTGATAAACCTATCAGGAAGCAGGAGAG AAATGTAGAAATGTCTGG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0491400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTAAGGCTCAAAACGTTGTTGATGTTGAGGATGGAACCTTGGAGATTGGAATGGAGTACAGAACTGTGTCTGGAGT TGCTGGACCATTGGTTATTCTTGATAAAGTTAAGGGACCAAAATTTCAAGAGATTGTTAATATTCGCTTAGGGGATGGTA CCACTAGGCGTGGACAAGTTCTAGAAGTTGATGGTGAAAAAGCTGTTGTTCAGGTCTTTGAAGGTACATCTGGGATTGAC AATAAATTTACTACTGTGCAATTTACTGGAGAGGTGTTAAAAACTCCAGTATCACTGGACATGCTTGGCCGCATATTTAA TGGTTCAGGAAAACCTATTGATAATGGTCCGCCCATATTACCTGAGGCTTACTTGGACATATCAGGAAGTTCCATCAACC CTAGTGAGAGAACCTATCCAGAGGAGATGATTCAGACAGGAATATCCACAATTGATGTCATGAATTCTATTGCTAGAGGT CAAAAGATCCCTCTATTCTCAGCTGCTGGACTCCCCCATAATGAAATTGCTGCTCAGATATGTCGTCAAGCTGGCTTAGT CAAGCGATTAGAGAAGTCTGATAATCTTCTTGAGGGTGGAGAAGACGACAACTTTGCCATTGTCTTTGCAGCTATGGGAG TTAACATGGAGACAGCACAGTTTTTTAAACGCGACTTTGAGGAGAATGGCTCGATGGAGAGAGTGACCCTTTTCCTTAAT CTGGCAAACGATCCTACAATTGAGCGTATCATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCATATGAATG TGGGAAGCATGTTCTTGTTATACTCACAGATATGAGCTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCTCGAGAAG AAGTACCCGGTAGACGTGGGTATCCTGGTTACATGTATACAGATCTGGCAACAATATATGAACGTGCTGGAAGAATTGAG GGGCGAAAAGGCTCTATTACACAGATTCCAATTCTAACCATGCCAAATGATGATATTACGCATCCAACTCCTGATCTTAC GGGATATATTACTGAGGGGCAGATATACATTGACAGGCAGTTGCATAACAGGCAGATATATCCACCAATCAATGTCCTTC CATCACTGTCTCGATTGATGAAGAGTGCCATCGGTGAGGGAATGACTCGAAGGGATCATTCTGACGTTTCCAATCAGCTT TATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCT GTTGTATCTGGAATTTTTGGACAAGTTTGAGAGGAAATTTGTCGCCCAAGGAGCTTATGATACCCGGAACATCTTCCAGT CACTTGATCTTGCATGGACTTTGCTCCGGATTTTCCCTCGTGAGCTTCTTCATCGTATTCCTGCCAAGACTCTTGATCAA TACTACAGCCGTGATGCCGGTAACTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0491400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGKAQNVVDVEDGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGID NKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARG QKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEGGEDDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLN LANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIE GRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQL YANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQ YYSRDAGN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43389:SF13
1 488 488 0.0 –
PANTHER
PTHR43389
1 488 488 0.0
IPR022879
PIRSF
PIRSF039114
12 488 477 2.9E-242
IPR022879
Gene3D
G3DSA:3.40.50.12240
13 486 474 1.6E-197 –
Hamap
MF_00310
18 486 469 55.577
IPR022879
CDD
cd18118
20 91 72 2.3058E-40 –
TIGRFAM
TIGR01040
20 486 467 7.9E-289
IPR005723
Pfam
PF02874
24 90 67 3.3E-13
IPR004100
CDD
cd01135
92 379 288 0.0 –
SUPERFAMILY
SSF52540
94 383 290 2.34E-83
IPR027417
Pfam
PF00006
147 377 231 9.9E-68
IPR000194
ProSitePatterns
PS00152
368 377 10 -
IPR020003
CDD
cd18112
387 481 95 8.3681E-60 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0033180
Cellular component Proton-transporting V-type ATPase, V1 domain A protein complex that forms part of a proton-transporting V-type ATPase and catalyzes ATP hydrolysis. The V1 complex consists of: (1) a globular headpiece with three alternating copies of subunits A and B that form a ring, (2) a central rotational stalk composed of single copies of subunits D and F, and (3) a peripheral stalk made of subunits C, E, G and H. Subunits A and B mediate the hydrolysis of ATP at three reaction sites associated with subunit A.
Subterm of
Part of
GO:0046034
Biological process ATP metabolic process The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:1902600
Biological process Proton transmembrane transport The directed movement of a proton across a membrane.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0491400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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