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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0491400 |
| Transcript ID | LotjaGi1g1v0491400.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP synthase subunit beta; TAIR: AT4G38510.1 ATPase, V1 complex, subunit B protein; Swiss-Prot: sp|Q9SZN1|VATB2_ARATH V-type proton ATPase subunit B2; TrEMBL-Plants: tr|G7KSI7|G7KSI7_MEDTR Archaeal/vacuolar-type H+-ATPase subunit B; Found in the gene: LotjaGi1g1v0491400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:100485431..100490540) extracted from Lotus japonicus Gifu genome v1.2.
GAAGGAGTACAGAGTACTTGGTCCACCGGGAGGACTGTAAAATGTTCTCTCAATGAGGATGTCCTGCTCCTGTATGGTAT GACTAAATCTAATGCTGATTTACTGTATCAGGGACCAAAATTTCAAGAGATTGTTAATATTCGCTTAGGGGATGGTACCA CTAGGCGTGGACAAGTTCTAGAAGTTGATGGTGAAAAAGCTGTTGTTCAGGTGAACCTGTAGTTGCATATATCATGAAAT CTTTGAGATGAATCGATGATGATGTCTTGATTTTCATTTTTCAAACATAACCAAAATATTGTATATTCTACTGTTGTATC TCAATCTTTGGTAAGAAAAAGCCTTCAACTATTGTCTACTTTGTTCATGTAGTTGTATTGAGTTTAATAACAAATATTTC TGTCTGTGTAGTTTTATCATCTTCTCCTGCTATCACTAACAGTGGGCTTAAATATATTTACCTTTTTGTACCGTTGACCA GGTCTTTGAAGGTACATCTGGGATTGACAATAAATTTACTACTGTGCAATTTACTGGAGAGGTATGGAATGTTTTTTTGT TATATTCTTTTGTTGCGAAGTTATTTGTAAAATTATTTATGCAAATTTTATTGAGTTTTTCATGAATGTATCTTCTGATT GCTGACTTGGTCACAGGAATATTGTAAATTGTAATTCTAATTCTGAAGGTGTAGTACCTAAATAATGTGTTAACTTTTAG TTAGAGTTGTATCTTGCTGTTTGGGAGTAGTTAATAACTTAATATAGAATTGGGTTAATCCATGGCTAGTCTTTTAGTAT GCTATCTTTTAAACCTTAACAATGAATAACAATCCTATCAGCATGTCTGAATTAGTTGAAAAAACGATACAGGGTGGCTT CATTAGTATCAAAATTTCTCTGTCTTATTGTTTATGTTCTTAGGTGTTAAAAACTCCAGTATCACTGGACATGCTTGGCC GCATATTTAATGGTTCAGGAAAACCTATTGATAATGGTCCGCCCATATTACCTGAGGCTTACTTGGACATATCAGGTATA TAATTTCTTCCAGGGATATATAAATCTGTATGTTTTTTTTTGTTTTTTTTATTTATAATATTTTCCAATAATTCAGGAAG TTCCATCAACCCTAGTGAGAGAACCTATCCAGAGGAGATGATTCAGACAGGAATATCCACAATTGATGTCATGAATTCTA TTGCTAGAGGTCAAAAGATCCCTCTATTCTCAGCTGCTGGACTCCCCCATAATGAAATTGCTGCTCAGATATGTCGTCAA GCTGGCTTAGTCAAGCGATTAGAGAAGTCTGATAATCTTCTTGAGGTATGGCTGTTATGTTAAATTAAATTTACTCTAAT ATGTTAAATGCTCCTGAATTATGAGTTTAGGTCATCATTTTCTGTATTAATACTTACCTGGTTAAGGCAAGTAGGGAGCT TGCGTCTATTCATTGCAAGTTTTCAGACTTGAACAGAAGTAGGCTTATTTGGGCGGCCTCTTGGCTATCTTGCTACCTGC TCATCCTGTTAATGCTCATTAGTCATTACACTTGCATCAGTTTTATTGAGGGTTTTAAGTGGGAGAGTTGTTATTTTTTG GTCGAATTTATTTCTAAGTACATCAAAATAATCCCTTAGTCAATAAAAATTAAGCACATTGCTTGTTTATACCTGAATTT ACCAAGATTTTGTTGCTTGAATATCAGTATTATCACTCTTATAAAGTTTACATATGATGTCTGGAATGATGTCTGGAAAC AGTTCTTTTGTAGATTATTAGTTACATCAACAAGTGAGGAATTTATAATGTTTACTCATTGTGAAATTTTTTATCAAGAA TCAAACACTTAGTGCTTGCAATATACGAGCTACTGGTTCCATGAAAGTCAAACATGGGGGTTTTGAATCAGCTAATTTTC TGGTTGTCTACATGGGGCTTTAAAAACTCAGACTAAATTACAGTATTACTGTTACTTTACTTACACTTCCTTGAAAATTG AAAATCAATATCAAATGGGAAAGGGAGTTTATGATATTCGGTTCCTCAATAGCATGCCATGGAGGAGCTGACAATTTACA TAATTAAATTGAAAAGGCCAAACTTTTTGTTCTACCGTTTACAGCAGATCTATTCGTTCTTATGTTGTTCCAATTAATAA ATGATATTTTCTGTGTTTATTTATTTTAACTTACAAATTTTACACTTACTAAGATGAATGTGGTTTCTAACAAATTTTAT CAATATGCAGGGTGGAGAAGACGACAACTTTGCCATTGTCTTTGCAGCTATGGGAGTTAACATGGAGACAGCACAGTTTT TTAAACGCGACTTTGAGGAGAATGGCTCGATGGAGAGAGTGACCCTTTTCCTTAATCTGGTAATGCTTACAGCCATTATG CAAGTGTTCTTTTATTCTCATCGTTGTTTTTTTCCTTAGTAATTTTTGTCCGTGTAGTTTAGAGGATAATAAAAAGTATG CCCCCCTGTCTAGTAATTATTATAACTTACAAAAAATATGAATTGATTTTTGTTGTACATTTTTCTTAGGAACTGTGGTG CCCCAGTTCATACATTCTGAAAAGGTCATTTTATCTTTAAATCTAAAATTTTGACATATATATGTAGTAGCGATATGTCA ATGATTAATACAAAATTAATCTTTTGGCTCATTAAGCCCAACCAGTGGGAGAAGTTTGATAAAGATTTCAGGAAGTACCA ACACGTTAGAAAGTTTGATTAATTATTTATCACCTTACATTTTTTTAAGGATATTATCGTGTTGTAAATATCAAATCTTG ATTTCATCTCCTGCATGAACAAACTGATCCTTAGAATGTTTGTTCTCATGCTGCTGTGATTTTCGCAGGCAAACGATCCT ACAATTGAGCGTATCATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCATATGAATGTGGGAAGCATGTTCT TGTTATACTCACAGATATGAGCTCTTATGCTGATGCTCTTCGTGAGGTAATATGCCTTCTACTTTAATTGTCTGAAGGAG GAAGCAAAATGAAAGGAGAAATGAGAAACCTTTTGTCCTTTATTATTCTTGTGTAACTTTAATTTCTTCGTCTACAAGAA ATGATGTAGGCTTGCATATGCTAGTTGCTTTTTCTTTTCATCGAGCATGAGAAGTAACTTCAAATTACTTAAAACTATGT CTCCAACTATTTGATTGTCAATGAGCCTTTGATAACTTTTGGATCCTGTAGGTATCTGCTGCTCGAGAAGAAGTACCCGG TAGACGTGGGTATCCTGGTTACATGTATACAGATCTGGCAACAATATATGAACGTGCTGGAAGAATTGAGGGGCGAAAAG GCTCTATTACACAGATTCCAATTCTAACCATGCCAAATGATGGTGATCAAATACTATTAAACTTTATCAGCTATCTTCCA TGATGCACTCTTCATTATGACTAATCATCTTTCTCGAACTTTTTCGGTACAGATATTACGCATCCAACTCCTGATCTTAC GGGATATATTACTGAGGGGCAGATATACATTGACAGGCAGTTGCATAACAGGCAGGTCGGTTATATATTAGAGCCTTTGG CTATTGCAAATATTGTACCAAATGCTGGGTTTGTTACCTGAATTATGTTCAAGAGAGAATTTAGTGCACAATGTTTCCCA AAATTGGATACTTGATATTACTTTAAGAACGGCCTCCACAGTTAAGTGTGAGAAAAGAAGGGGAGCCTTGGCGCAACGGT AAAGGGCTGTTGCCATGTGACTGAGGTCACAGGTTTAAGTCCTGGAAACAGCCTCTTGTGTAAGAAACAAGGTAAAGCTG CGTACAATAGACCATGTGGTCGGACCCTTCCCCAGACCCTGTGGTCGGACCCTTCCCCAGACCCTGCGCATAGCGGGAGC TGTAATGCACCGGGCTGCCCTTTTATTACTATAAGAGCGGTAAATTGTTTGATTTTTATTGAATGGAAGTTACATGAGAG CTTAGTTAGTCTTCCTCAACACATAAACTTTCTTTTTATCCTCTAGTGGCCTTAACAAATAATTAGAAATGATTTCGGTA TATATTTCCATTGATACATTGAAAAGTAGAATGAAATGCTGTGACTTTTCCTTCACCTGTAAGATTATTAGAGATTTTTT TATGAAGTTTATCCATGCATTACTGCATAAAATTAAACCAGCCTTTTATTTCTGTGATCTACTCTGTTCTTGATGTATTT AAGTAGGTATCAATAAGTTTAAAGCCACTTGATAAATTTCTTACAAAATATTAGACTGAAACTTAATCTGAAATCCTTTT GTATTCACAGATATATCCACCAATCAATGTCCTTCCATCACTGTCTCGATTGATGAAGGTGAGATTAATCTTGTTTGCTT GATATCAAGACAATTGATAAAACATTTTGACTTTGTTTACTGCTGGATGGGTGAGATGTCCCTACCGCTTGATTCCACCC ATCAAATCACCCAATAATCTAACTGAAATTCGTCAAAATTCGGACGATTTTTGCTGGTTAAAGTAACACTTTGCTTAGTA GAAAGTTAAATTATGGGGTTTATATTTTAGTGATGCATCACGGTTTCCTCTGCAGAGTGCCATCGGTGAGGGAATGACTC GAAGGGATCATTCTGACGTTTCCAATCAGGTCTGGTTTTGTTTGCTTACCATATTGCCATTTTTGTTTCCAAATGCAATC TCATTGGTGTTATTTTGTTTCTTTTCAGCTTTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTGG TTGGAGAAGAAGCACTTTCATCTGAGGACCTGGTCTCTACCATTGTTCTCTGTTTTTTTTTTTCAAATTGTGTTTGTCCT TTAACTCTGATAATAAACTACGTTCTTATTTTTCTTATTTACAGTTGTATCTGGAATTTTTGGACAAGTTTGAGAGGAAA TTTGTCGCCCAAGGAGCTTATGATACCCGGAACATCTTCCAGTCACTTGATCTTGCATGGACTTTGCTCCGGATTTTCCC TCGTGAGCTTCTTCATCGTATTCCTGCCAAGACTCTTGATCAATACTACAGCCGTGATGCCGGTAACTGA
CDS sequence (LotjaGi1g1v0491400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTAAATCTAATGCTGATTTACTGTATCAGGGACCAAAATTTCAAGAGATTGTTAATATTCGCTTAGGGGATGGTAC CACTAGGCGTGGACAAGTTCTAGAAGTTGATGGTGAAAAAGCTGTTGTTCAGGTCTTTGAAGGTACATCTGGGATTGACA ATAAATTTACTACTGTGCAATTTACTGGAGAGGTGTTAAAAACTCCAGTATCACTGGACATGCTTGGCCGCATATTTAAT GGTTCAGGAAAACCTATTGATAATGGTCCGCCCATATTACCTGAGGCTTACTTGGACATATCAGGAAGTTCCATCAACCC TAGTGAGAGAACCTATCCAGAGGAGATGATTCAGACAGGAATATCCACAATTGATGTCATGAATTCTATTGCTAGAGGTC AAAAGATCCCTCTATTCTCAGCTGCTGGACTCCCCCATAATGAAATTGCTGCTCAGATATGTCGTCAAGCTGGCTTAGTC AAGCGATTAGAGAAGTCTGATAATCTTCTTGAGGGTGGAGAAGACGACAACTTTGCCATTGTCTTTGCAGCTATGGGAGT TAACATGGAGACAGCACAGTTTTTTAAACGCGACTTTGAGGAGAATGGCTCGATGGAGAGAGTGACCCTTTTCCTTAATC TGGCAAACGATCCTACAATTGAGCGTATCATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCATATGAATGT GGGAAGCATGTTCTTGTTATACTCACAGATATGAGCTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCTCGAGAAGA AGTACCCGGTAGACGTGGGTATCCTGGTTACATGTATACAGATCTGGCAACAATATATGAACGTGCTGGAAGAATTGAGG GGCGAAAAGGCTCTATTACACAGATTCCAATTCTAACCATGCCAAATGATGATATTACGCATCCAACTCCTGATCTTACG GGATATATTACTGAGGGGCAGATATACATTGACAGGCAGTTGCATAACAGGCAGATATATCCACCAATCAATGTCCTTCC ATCACTGTCTCGATTGATGAAGAGTGCCATCGGTGAGGGAATGACTCGAAGGGATCATTCTGACGTTTCCAATCAGCTTT ATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTG TTGTATCTGGAATTTTTGGACAAGTTTGAGAGGAAATTTGTCGCCCAAGGAGCTTATGATACCCGGAACATCTTCCAGTC ACTTGATCTTGCATGGACTTTGCTCCGGATTTTCCCTCGTGAGCTTCTTCATCGTATTCCTGCCAAGACTCTTGATCAAT ACTACAGCCGTGATGCCGGTAACTGA
Protein sequence (LotjaGi1g1v0491400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTKSNADLLYQGPKFQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFN GSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLV KRLEKSDNLLEGGEDDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYEC GKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLT GYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDL LYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQYYSRDAGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Hamap | 2 | 459 | 458 | 52.874 | ||
| Gene3D | 9 | 461 | 453 | 2.2E-190 | – | |
| PIRSF | 9 | 461 | 453 | 6.2E-234 | ||
| PANTHER | 11 | 461 | 451 | 0.0 | – | |
| PANTHER | 11 | 461 | 451 | 0.0 | ||
| CDD | 12 | 64 | 53 | 6.84522E-28 | – | |
| TIGRFAM | 12 | 459 | 448 | 1.3E-278 | ||
| Pfam | 13 | 63 | 51 | 3.4E-9 | ||
| CDD | 65 | 352 | 288 | 0.0 | – | |
| SUPERFAMILY | 67 | 356 | 290 | 2.02E-83 | ||
| Pfam | 120 | 350 | 231 | 8.6E-68 | ||
| ProSitePatterns | 341 | 350 | 10 | - | ||
| CDD | 360 | 454 | 95 | 7.62139E-60 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Proton-transporting V-type ATPase, V1 domain | A protein complex that forms part of a proton-transporting V-type ATPase and catalyzes ATP hydrolysis. The V1 complex consists of: (1) a globular headpiece with three alternating copies of subunits A and B that form a ring, (2) a central rotational stalk composed of single copies of subunits D and F, and (3) a peripheral stalk made of subunits C, E, G and H. Subunits A and B mediate the hydrolysis of ATP at three reaction sites associated with subunit A. | ||
| Biological process | ATP metabolic process | The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Proton transmembrane transport | The directed movement of a proton across a membrane. |
Expression pattern of LotjaGi1g1v0491400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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