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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0491600 |
| Transcript ID | LotjaGi1g1v0491600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trafficking protein particle complex subunit 2-like protein; TAIR: AT2G20930.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q54CU7|TPC2L_DICDI Trafficking protein particle complex subunit 2-like protein; TrEMBL-Plants: tr|G7KTB1|G7KTB1_MEDTR Trafficking protein particle complex subunit-like protein; Found in the gene: LotjaGi1g1v0491600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:100513909..100514949) extracted from Lotus japonicus Gifu genome v1.2.
ATGATCGTCTGCGTCGCCGTCGTCGGCCACCAGGTCAGTAGCCACCTACACCGTGATCGGCCTCGCCACTCTGCGGGAGA AAATCGCCGATCTGCTCATATTACCTCTGAATTTTTCGAATTTTGTTTCCCTAATTTTTTTGTTGGGATTCTCCGTTGAT CGCAGAACAATCCGCTGTACATACAGAGCTTCACGGAGGCCGATGATGCTCTCAAGCTCCACCACATCGTCCATTGCTCG CTCGATGTGGTCGACGAGCGAGGTGTGTTTCGATCGTGCTCATTTTTGTTGCCTAGGGTTTTTTTATGCAAAAATAGTTG AGATTCTGGGACCCTTTAGAGAAATTTTCAATTTTTGTTCCTATTCTTGTTGGGGTATTTTTTTTCTTATCGGCAAGTTT TCGTTTTTGATGCACCTGATTTAGATTCTTAGGCTCTCCGATTCAGTGAAAAAATCAGTTTTTTTGCTTTGTAATTTAGT TTTGTTTTGGGGAGGTTGAATTGAATGGTTTAGAATTTTGGGACCCTCTAATTTAGAGAAAGTTTAATTTTTTTTTGCAT TTTTATGGAATCCTCTGAATCTCATGAAATGTGTTTGCTTGGCAGTGAACAATCCTAAAAAATCTGGGCCTATGCTGAAT GAGACGTTTCTGGGACTGCTATATCCTATTGAAAATTACAAAGTGTGAGTGCATTTGTTGTCTATCTGAATAAGTTTTAT TTGATTTATCTTTAAATCAATTAATATGAGTGGTGATTTGCAGTTATGGATATCTGACGAATACAAAGGTGAAATTTATC TTGGTGACCACGGATCTGGATGTTAAAGATGCAGATGTAAGAAATGTGAGTATGGACATAAATTGTTGGTTTTCTTTCAT CTTCTCTGATGTGATTTCCTGGAAGTATGTTTTTCCTTTATACCAGTTCCCTTGTCCTCTTTAATGGAAGTATTTGACTA ATTAAGTAATTCTTTAGCAAAGGTGTTAAAGACATATTGAAGTTAATCCTGATGGATGGTAGTGTCGTACTAGTGTGCTA G
CDS sequence (LotjaGi1g1v0491600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCGTCTGCGTCGCCGTCGTCGGCCACCAGAACAATCCGCTGTACATACAGAGCTTCACGGAGGCCGATGATGCTCT CAAGCTCCACCACATCGTCCATTGCTCGCTCGATGTGGTCGACGAGCGAGTGAACAATCCTAAAAAATCTGGGCCTATGC TGAATGAGACGTTTCTGGGACTGCTATATCCTATTGAAAATTACAAAGTTTATGGATATCTGACGAATACAAAGGTGAAA TTTATCTTGGTGACCACGGATCTGGATGTTAAAGATGCAGATGTAAGAAATGTGAGTATGGACATAAATTTGTCGTACTA G
Protein sequence (LotjaGi1g1v0491600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPMLNETFLGLLYPIENYKVYGYLTNTKVK FILVTTDLDVKDADVRNVSMDINLSY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 106 | 106 | 7.7E-32 | – | |
| PANTHER | 1 | 98 | 98 | 8.4E-50 | – | |
| PANTHER | 1 | 98 | 98 | 8.4E-50 | ||
| SUPERFAMILY | 2 | 97 | 96 | 3.84E-18 | ||
| CDD | 3 | 98 | 96 | 1.67447E-45 | – | |
| Pfam | 7 | 103 | 97 | 1.3E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | ER to Golgi vesicle-mediated transport | The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi. |
Expression pattern of LotjaGi1g1v0491600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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