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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0498300 |
| Transcript ID | LotjaGi1g1v0498300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT1G14420.1 Pectate lyase family protein; Swiss-Prot: sp|P40973|PLY_LILLO Pectate lyase; TrEMBL-Plants: tr|I1N629|I1N629_SOYBN Pectate lyase; Found in the gene: LotjaGi1g1v0498300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:101443196..101446152) extracted from Lotus japonicus Gifu genome v1.2.
CTTTCTTCGCTTCCTAAATTTAGAACCACACACCTTTCGATCTTGAAGGTTTGCAACCATTATATAAGAACACACATTTG GTTCCTTCAATGATTCACCCCGAAGCAATATTATGCTACGGGCCTCATAATTTTTACTTGGTTTTATTTGGTATTGGCTT GCTAAGGTCTTTTCTCTCTGAGCTGAATTAATTTCAAGACCTTGGCTAACCTTGCCTTTTAAACCAAGAAAAACCAAAAA AAGAATTTAGATCCCAAGCAAAAACTTCGAAAAAAAAAAATACACACAACAAGGCATTGGAAATTATTATTTAACAATAT GGCAAGCAAGGTTACCTTTGTTCTATTGGCTGTTTTTGCCATTATTGTTCCATGCCTTGAGGCTGGTATTGCAGAGTTTG ATGATTATCTCAAAGCCCAAGAGGAAATTGCCCGTGAAATTGCTTTTAAGTCCTATGTGCCAAACCCTGAAAATATTACA ACCGAGCTCAACATGCACGTTCACATGTAAGTTTTAATACGTTCACACACTCGCTTTCTCTCGCATCCCTTTTTACCCGC TTTCTTTTTCTAGCTCTCTTTTCTCACACCATTACACCACACATCGTATTTATCTGGATGTGGGTGTAATTGACGTGTGA GCAAATTATTTTCTTTAACTTATTAATACATTACATGATTCAAATGCAGTTTTCCTTAATTCTATAACTATTTGACTCTT TATGCAATTATACAATAAATACAAAATGTTTATCATATGAAAAACTTGTTAGATAGAGGAAATTTAGAACACCGAACTCA TACAAAATGATGTCCCAAAACAGATTTAGATCTTTTCTTATATATTTAATAATTTAATAACATGTTTAAGAGAAAAGAAA CAAATTTTTTTTAAATGATGAAAATCATGATTCTCACAATTATTCCATGATGCAGTGCCATGGAAGAGTACACAAACAGC ACAAGGAGGGAACTAAGGCAGAGAGGTGGACGTAGAGGAAGAAAATGCATGGCGACCAACCCAATTGATCGTTGCTGGAG GTGTAGGAAAAATTGGGCCCAAGACCGCCAATTGCTAGCTAAATGTGGCAAGGGTTTCGGAAGAAGGGCAGTCGGAGGAC TCGGCGGCCCTATCTATGTAGTCACCGATGATTCTGATAACGACATGGTTAGCCCTAAACCCGGAACCTTGAGATATGCT GTGGTCCAAAAGGGACCACTTTGGATCATTTTTGCACGTAGCATGGTCATTACATTGCAACAAGAGTTGTTGATTTCATC CGACAAGACCATTGATGGTCGTGGCGCCAATGTGCAAATTAGGGGTGGTGCTGGACTCACCATGCAATTCGTCAACAATG TCATCGTCCATGGCATTCGCGTCAAAAATATCAAGGCTAGGAATGGTGGTATGATTAGGGATTCATATAACCACGTTGGA ATGAGGACCAGGAGTGATGGTGATGCCATCTCCATTTTCGGCTCATCCAACATTTGGATTGATCATCTTTCCTTGTCCGA ATGTGAGGATGGTCTTGTCGACGTTATTCAGGGATCTACCGCAATCACCATCTCAAATTGCCACATGACCAAACACAACG ATGTAACTAATTTACATTATTCCTCTTACTCTTACTCTTCCTTTCTTACTATTTTTTCTTCCTTATTAGTTAGTAGTATA AAGAAAACTATAGTTCCATTATTCAACACACCCAAACACTACATATACCTTATAGATACCTCTTTTTTTCCCCTCTATAT CACTTTTCTTATCACATATATCATTTATCACATCAATTACTTCATTTCTCTTCTCTTCTCTGCATGCTTGATGATGTGAA AAATTAATTACAATAGGATCTAAGTTAAATATATGAAAATGATACTCACTATGTTAGCCTCTTTGGAGAAGTGAAATTGT GTAGAAACATTATATGAGCTATTTTATAATGTGATCCTTCTTTAGTGTTAAAATCGATTTACAGAGAAACATTTTAATTT GTGAAATGGAATTTTTCTGTGCTAGGTGATGTTGTTTGGAGCTAGTGACAGCTACTCTGGTGACAAGATCATGCAGATCA CAGTGGCGTTCAACCACTTTGGACAGGGTCTGATCCAGAGGATGCCAAGGTGCAGATGGGGTTTCGTCCATGTGTTGAAC AATGACTACACCCATTGGCTGATGTACGCGATTGGTGGGAGTTCGGGGCCAACCATTCTGAGCCAGGGCAACAGGTTCAT TGCACCTAACAACGATGCTGCCAAGGAGATCACACACAGGGATTACGCAACCCCTGCTGTATGGTCTAAGTGGCAATGGA CTTCACAGAATGATCTTTTCATGAATGGTGCCAAGTTTGTTTCTTCTGGATCACCTATTGGAAAGTTGCCATTCAAGAAG GGTTTCATAATGAAACCAAGGCCTGGAATTTTTGCTAATAGGCTTACACGCTTTTCTGGGGCTCTCAATTGCAGGATTGG TAGACCTTGTTAGTGAATTCTATTCATTCATCATTATGTACTTGTAAAGAAAAAAATCAAGGGAAAAAAAAGAATGAATT AGAACACCTCTAATTCCTATTTTTAGTATGGACTGAAATGTTTTAGAGGGAAATGTATAGGGAATGTTCGATATTGTGGC TTTTGGGAGAGAATGAAAAAGGAAAGTTGTTGCTTGGGGTTAAGATGAAAAGAAATAAGATGGGATAGATCCAAATCGTT TTATGAATACATTTTTTGTTTGTGTTTCTCAAAATGTGTTTCTTTTGCGGGGCTGTCTAAATAACCCATGATGAAATTTG GGTTAAATAACCCATAGTCTAGGTGGACCAATCACATTTAAGATAAGTTAGTTAATTTATTTTATATTTTATTTCTTAAT TTATTTACGTTAAATATGTTTTTGTCCCTGATTTATACACATAAATATAAAATGGTACCTGAATAAAAAACACATTT
CDS sequence (LotjaGi1g1v0498300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAGCAAGGTTACCTTTGTTCTATTGGCTGTTTTTGCCATTATTGTTCCATGCCTTGAGGCTGGTATTGCAGAGTT TGATGATTATCTCAAAGCCCAAGAGGAAATTGCCCGTGAAATTGCTTTTAAGTCCTATGTGCCAAACCCTGAAAATATTA CAACCGAGCTCAACATGCACGTTCACATTGCCATGGAAGAGTACACAAACAGCACAAGGAGGGAACTAAGGCAGAGAGGT GGACGTAGAGGAAGAAAATGCATGGCGACCAACCCAATTGATCGTTGCTGGAGGTGTAGGAAAAATTGGGCCCAAGACCG CCAATTGCTAGCTAAATGTGGCAAGGGTTTCGGAAGAAGGGCAGTCGGAGGACTCGGCGGCCCTATCTATGTAGTCACCG ATGATTCTGATAACGACATGGTTAGCCCTAAACCCGGAACCTTGAGATATGCTGTGGTCCAAAAGGGACCACTTTGGATC ATTTTTGCACGTAGCATGGTCATTACATTGCAACAAGAGTTGTTGATTTCATCCGACAAGACCATTGATGGTCGTGGCGC CAATGTGCAAATTAGGGGTGGTGCTGGACTCACCATGCAATTCGTCAACAATGTCATCGTCCATGGCATTCGCGTCAAAA ATATCAAGGCTAGGAATGGTGGTATGATTAGGGATTCATATAACCACGTTGGAATGAGGACCAGGAGTGATGGTGATGCC ATCTCCATTTTCGGCTCATCCAACATTTGGATTGATCATCTTTCCTTGTCCGAATGTGAGGATGGTCTTGTCGACGTTAT TCAGGGATCTACCGCAATCACCATCTCAAATTGCCACATGACCAAACACAACGATGTGATGTTGTTTGGAGCTAGTGACA GCTACTCTGGTGACAAGATCATGCAGATCACAGTGGCGTTCAACCACTTTGGACAGGGTCTGATCCAGAGGATGCCAAGG TGCAGATGGGGTTTCGTCCATGTGTTGAACAATGACTACACCCATTGGCTGATGTACGCGATTGGTGGGAGTTCGGGGCC AACCATTCTGAGCCAGGGCAACAGGTTCATTGCACCTAACAACGATGCTGCCAAGGAGATCACACACAGGGATTACGCAA CCCCTGCTGTATGGTCTAAGTGGCAATGGACTTCACAGAATGATCTTTTCATGAATGGTGCCAAGTTTGTTTCTTCTGGA TCACCTATTGGAAAGTTGCCATTCAAGAAGGGTTTCATAATGAAACCAAGGCCTGGAATTTTTGCTAATAGGCTTACACG CTTTTCTGGGGCTCTCAATTGCAGGATTGGTAGACCTTGTTAG
Protein sequence (LotjaGi1g1v0498300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASKVTFVLLAVFAIIVPCLEAGIAEFDDYLKAQEEIAREIAFKSYVPNPENITTELNMHVHIAMEEYTNSTRRELRQRG GRRGRKCMATNPIDRCWRCRKNWAQDRQLLAKCGKGFGRRAVGGLGGPIYVVTDDSDNDMVSPKPGTLRYAVVQKGPLWI IFARSMVITLQQELLISSDKTIDGRGANVQIRGGAGLTMQFVNNVIVHGIRVKNIKARNGGMIRDSYNHVGMRTRSDGDA ISIFGSSNIWIDHLSLSECEDGLVDVIQGSTAITISNCHMTKHNDVMLFGASDSYSGDKIMQITVAFNHFGQGLIQRMPR CRWGFVHVLNNDYTHWLMYAIGGSSGPTILSQGNRFIAPNNDAAKEITHRDYATPAVWSKWQWTSQNDLFMNGAKFVSSG SPIGKLPFKKGFIMKPRPGIFANRLTRFSGALNCRIGRPC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| PANTHER | 2 | 440 | 439 | 1.1E-258 | – | |
| PANTHER | 2 | 440 | 439 | 1.1E-258 | – | |
| Phobius | 5 | 17 | 13 | - | – | |
| TMHMM | 7 | 24 | 18 | - | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 440 | 418 | - | – | |
| Pfam | 24 | 76 | 53 | 4.0E-16 | ||
| Gene3D | 90 | 433 | 344 | 3.2E-115 | ||
| SUPERFAMILY | 91 | 431 | 341 | 1.98E-94 | ||
| PRINTS | 113 | 130 | 18 | 7.4E-80 | ||
| PRINTS | 137 | 162 | 26 | 7.4E-80 | ||
| SMART | 165 | 362 | 198 | 2.1E-99 | ||
| PRINTS | 173 | 189 | 17 | 7.4E-80 | ||
| Pfam | 174 | 356 | 183 | 5.5E-21 | ||
| PRINTS | 237 | 258 | 22 | 7.4E-80 | ||
| PRINTS | 317 | 336 | 20 | 7.4E-80 | ||
| PRINTS | 339 | 358 | 20 | 7.4E-80 | ||
| PRINTS | 381 | 405 | 25 | 7.4E-80 | ||
| PRINTS | 411 | 434 | 24 | 7.4E-80 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Pectate lyase activity | Catalysis of the reaction: a pectate = a pectate + a pectate oligosaccharide with 4-(4-deoxy-alpha-D-galact-4-enuronosyl)-D-galacturonate end. This reaction is the eliminative cleavage of pectate to give oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. |
Expression pattern of LotjaGi1g1v0498300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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