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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0504900 |
| Transcript ID | LotjaGi1g1v0504900.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lipoate-protein ligase A; TAIR: AT3G29010.4 Biotin/lipoate A/B protein ligase family; Swiss-Prot: sp|O13629|LPLA_SCHPO Putative lipoate-protein ligase A; TrEMBL-Plants: tr|K7LFQ5|K7LFQ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0504900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:102286702..102288620) extracted from Lotus japonicus Gifu genome v1.2.
TGTAGAATGGCTATGGCGGGTAAGGCAAGAGAAGCTGGAGTACCATTGATGAAGCTGGTTAGGTTAAGAGGGCTGCCTAT TTTGCAGCAATTGCATTTAGAGGAACGGCTGCTTCGCACCAGTTCAGATAATTGGTGCCTTATTAATGATGGAACCAGTT CCGCTGCCATTGTAATGGGATTGTCTGGGTACTTCTTTATAACTTTAGAATGTTTTTCTGCCTCAGATTCATGATCCAGT TTTGCTAATATTCCTGTACCTGATGTTTTTTTGTTCCATTATTTGGCACTATTCCATGAACATAAGTGTTTGAAGTAGGT CTCTTATTTATAAGTTTACATTGAGTTTAGGAATCTGATGCACATGCGCTTGTGAAAACTGAAAAGTTTATACATTGCAA GTAGTTATAGATGGAGTATAAAAATCTGATACACATGTGGAAACTGAATATAAGCATTGATTGTTTTCCTGCAGTCTAAT TTTTTTTTCTTGATTTTGTACCATGTTGCTGTTAAATTGGGTATTTAAATCACTGTCAAGCATTAAGTTCATGGAGTCTT TTTGATTCTGAGGAATTTCCTTGTGTTTTTCACTTTTTCTTTCTTTAAAGCATTCTGTAATATTTTTTTCAAATTCTCTG GAGATTTTTTTTTTCTATTGATTCAAACTGAAAGTCCAACCAATCTTGGCCATTTTCTCCGAAATCCGAATTTATGCTTG GAGGGTGGTAAGTGGGTGATGTCATGTTCTTACTTGTTAAAATTGTTGCACGTTTTAGGAATGTACATTTTTCACCTCTC CCATGGAATTGGTTTTAATCAATCTTGTGGGATGTTGCATTCCTTGGTATGAAAAATACCTCAGACTTCTAATAACACTT GTATCTAGCAAATGTATGTTACATATACTTGTTGATTTTTCTTTATTTGTGTAAATGCCAAAATGGACTTAATTTAAATG TGGATATTTACTTAGGAAACTTTCAGAACTTATCGAAGTCAAGCCGGTGCTGCGAGATCATATACCCATCATCAGAAGGT TTACCGGAGGAGGAACTGTTGTTGTTGACCATGGCACTATATTTGTTACACTGATATGCAATAAAGATGCTGTTCCACAC GTGCAACCGTTTCCCCGCTCCATCATGTCTTGGAGTGGTCAATTATACAGTGAAGTTTTCGAAGGGCATGCTGATTTCCG CCTCCGTGAGAATGGTACATTGATCGAGTCCAGTATCAATATGCTTTTGCAATGTTCCTAGGGCCATTACACTACCAGTT TACATGAAATGGACACAGAAAATGGATAGTATGGAGTTGTGTTTTAATTCAATAATGATATTTCTCTTCTTATCTTCCCC ATCAAAACTTTAATGAGTTACAAAAAGCATTTGAAAAATTATATTTAAAAAAAAGCATACAAAAAATGAAATTAGTGCAT TTCTGTCTACTTCTGTAGTTTCTTTTGGCATTTTCCATTTTCTCAGCCAATCATGTTTCAGGCATCTATATCGAGCACAT GCTGCTTTTTATTTTTCTCTGAGAAGCAACTAGAATCATTCAATGAATTCATTTAATTTCTTTGTTTAAATTTCCATATC TGTTTAATTGAAACTTAAAATGAAGTTCTGATTGATTCTCATTTCCTTTGCGCTTTAAGATTATGTGTTTGGTGATCGTA AGTTCGGCGGGAATGCTCAGTCTATAACCAAGCACCGGTGGGTACACCACACGTCTTTTCTATGGGATTATGAGGGCAAG AACATGGCTTATCTCAAGTTACCTGCAAAGGCTCCTAAGTATCGATTAGTAAGCTTACAATTTCATTCTTTTCTCTGCAT TGGAGTTATTAACTTGTTATATGCTCTGTGCTCCCTGTCTCCTTGGGTTGGATTGATATGCTTTATGCCACTCATATAA
CDS sequence (LotjaGi1g1v0504900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTATGGCGGGTAAGGCAAGAGAAGCTGGAGTACCATTGATGAAGCTGGTTAGGTTAAGAGGGCTGCCTATTTTGCA GCAATTGCATTTAGAGGAACGGCTGCTTCGCACCAGTTCAGATAATTGGTGCCTTATTAATGATGGAACCAGTTCCGCTG CCATTGTAATGGGATTGTCTGGGAAACTTTCAGAACTTATCGAAGTCAAGCCGGTGCTGCGAGATCATATACCCATCATC AGAAGGTTTACCGGAGGAGGAACTGTTGTTGTTGACCATGGCACTATATTTGTTACACTGATATGCAATAAAGATGCTGT TCCACACGTGCAACCGTTTCCCCGCTCCATCATGTCTTGGAGTGGTCAATTATACAGTGAAGTTTTCGAAGGGCATGCTG ATTTCCGCCTCCGTGAGAATGATTATGTGTTTGGTGATCGTAAGTTCGGCGGGAATGCTCAGTCTATAACCAAGCACCGG TGGGTACACCACACGTCTTTTCTATGGGATTATGAGGGCAAGAACATGGCTTATCTCAAGTTACCTGCAAAGGCTCCTAA GTATCGATTAGTAAGCTTACAATTTCATTCTTTTCTCTGCATTGGAGTTATTAACTTGTTATATGCTCTGTGCTCCCTGT CTCCTTGGGTTGGATTGATATGCTTTATGCCACTCATATAA
Protein sequence (LotjaGi1g1v0504900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMAGKAREAGVPLMKLVRLRGLPILQQLHLEERLLRTSSDNWCLINDGTSSAAIVMGLSGKLSELIEVKPVLRDHIPII RRFTGGGTVVVDHGTIFVTLICNKDAVPHVQPFPRSIMSWSGQLYSEVFEGHADFRLRENDYVFGDRKFGGNAQSITKHR WVHHTSFLWDYEGKNMAYLKLPAKAPKYRLVSLQFHSFLCIGVINLLYALCSLSPWVGLICFMPLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 197 | 197 | - | – | |
| PANTHER | 5 | 200 | 196 | 2.8E-105 | – | |
| PANTHER | 5 | 200 | 196 | 2.8E-105 | – | |
| SUPERFAMILY | 14 | 192 | 179 | 1.16E-36 | – | |
| Gene3D | 14 | 199 | 186 | 6.7E-32 | – | |
| ProSiteProfiles | 40 | 212 | 173 | 9.624 | ||
| Phobius | 198 | 225 | 28 | - | – | |
| TMHMM | 198 | 220 | 23 | - | – | |
| Phobius | 226 | 226 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cellular protein modification process | The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification). |
Expression pattern of LotjaGi1g1v0504900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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