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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0505200 |
| Transcript ID | LotjaGi1g1v0505200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CASP-like protein; TAIR: AT5G15290.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|P0DKC2|CASP1_LOTJA Casparian strip membrane protein 1; TrEMBL-Plants: tr|W9R0I2|W9R0I2_9ROSA CASP-like protein; Found in the gene: LotjaGi1g1v0505200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:102310779..102319745) extracted from Lotus japonicus Gifu genome v1.2.
ACGGCACATGTAAGGCGGTGAAAAAACAAAAACAAGTGCTACAAGAAACCCTAGCGGCTACACCTTCATTCTGTTGTTTT TTCTCTTCACTCGAAACCGTTCAGCACTAGCCAAATTGCAAGCGATGACCGGTCAACGCGGTTCTTACGGCAAACGCTCC CACTCCCAATCCGACTCCGACCACCACAACGGCGGCGGTAACAGGAACAAACGCCGGAACCCTGGCGGCGACGACCAGCA ATCCCACATCGGCCCCGACGACACCGTCTACCGCTACCTCTGCCCCATTCGCAAGATCGGCAGCGTCATCGGCCGCGGCG GTGACATCGTCAAACAGCTCCGGGCCGAAACCAAGGCCAAGATCCGCATCGGCGAGACACTCCCTGGATGCGACGAACGT GTTGTTACCATCTACAGCTCCTCTGAGGAGACTAACGATGTTGAGGACTCCGGCGAACCTATCTCCCCGGCGCAGGATGC GCTCTATAGGGTTCACCAGAGGGTGATTGCTGAAGACCAGCGCTACAGTGAGGATGAGATGGAAGAAGATGGAGCGAACC AGGTCACTGCGAAGCTTCTGGTTCCGTCTGATCAGATCGGTTGCGTGATTGGAAAAGGTGGCCAGATTGTTCAGAGTATT CGGAGTGAAACCGGAGCGCAGATTCGGATCCTTAAGGATGATCGCTTGCCTCCTTGCGCCTTGAGCAACGATGAACTTGT TCAGGCAAATTGAATTTACCCTCTTTTTACATTGATTGAGATGATTGCAACCAGTATCTAATTGGAATTTAATTTGCTTA TAATAATTAGTTTCATACTGAATTCAATAGGCTTAAATTGAGGGATGGTTAGCTTCAATTTCAATTTGATATGCTGCTGA TATTACAGCATTAGTATGACTTGTTTGAATTTGGATTTGATGATATTATGGACCATCAGGAAAAAAATTATTGAGATGAA GTGATGAACACTCATTTGAATCTGAACTCGAAGAATTAAAACAAAAGAGAATGATTAGGAGGGTGGTTTTGGGATGAGTT TAGTGAGTCAAGATCCGCATTCAGTAGCGACTAGCGAGGCATAGGAGTCTTGTTTAATAATTAATATATAGGAGTAGATC CTATAGTTATTGTTGGTCATGAATGAAAACTTATGGCATGTCTTTGTTTAATTGTAATTGTCAGTTTTTGTTGGTTGTGA ACTGCAGATTTCTGGGGAGGCTGCGGTTGTGAAGAAAGCACTGGTTCAAATTGCAACTCGGCTTCATGACAATCCGTCAC GTTCTCAGCATCTGCTTACTTCTGCGGCTCCTGGTGTTTATGCAGCTGGCGGTCCAATGGTGCCGGCTGCAGGCCCTCCA ATTATGGGGATGGCTCCTCTTGTGGGTGCTTATGGGGGCTATAAAGGTGATGTTGGAGATTGGTCAAGGTCCATGTATTC AGCCCCTAGGGATGAAGGGTCTATGAGGGAGTTTTCGGTTCGAGTTGTTTGTCCAACCGGAAACATTGGGGGAGTGATAG GTAAGGGTGGTGCTATAATAAATCAAATTAGACAGGATTCTGGTGCTACGATCAAAGTTGATAGTTCAGCAACTGAAGGA GATGACTGCTTAATAGCCATTTCAACAAAAGAGGTAAAATTTTGATCATTATGCATACTCTTTTATTTATTAGCTTTGTT TTTTGTGATGGAATATCATGTTTTTCTTCCATTCACGATATTGATTGTTTTTAAATTGTTTTTTTATGTAGTTCTTTGAC GATTCTTTCTCCCCGACAATTGAAGCAGCTGTGCGTTTGCAACCCCGGTGCAGTGATAAAGTTGAAAGGGATTCAGGGAT TGTCTCTTTTACTACCCGGTTACTGGTGCCATCCTCACGAATTGGTTGCCTTATTGGTAAAGGAGGAACTATCATAACTG AAATGAGGAGGCTTACGAAAGCTAACATCCGCATCCTACCTAAGGAAGATCTTCCTAAAATTGCATCTGAAGATGATGAA ATGGTGCAGGTATAGGAAAATCTTGTTTTCTTTTTGGGTGATTAAAAGTTGCAATTCTCTATAATTCTGAACTATGGTGG TCTTTTCTTTCCATTCTTTATTAGATATCTGGAGACCTTGATGTTGCCAAGGATGCTCTCGTGCAAGTGCTTACACGCCT AAAAGCAAATCTTTTTGATAAGGAGCGGGCTGTTCCAGGATTCCTTCCTGTAATGCCATATCTCCCTGCTTCTGTTGATG GATCAGATGGTTTGAACTATGACAGTAGAGATGGTAAACGGCATGGACGTGGACATTCTTACTCTAGTGGCTATGGAGGC TTAAGTGATTTGCCACCGGGTGACAGTTATGGAAGCTATGGAAGTCCACAGGTTCTTTTTACAACCATACTAGTTTGTTA AGATTTTCTGTGGATGAGTTCCACAAGTTCAATTGTTATTTCTCAATTCATTGTTTTTAATATTGTTCCATATGTCTGTA GGTTGGTAGTGGTGGTCCTTATGGAGCTTATGGAAGTTATGGTTTGGGACGGACCAGTACTTCTGGGTAACCATTCAAGT TATTTAATGTTCTGAGTATCATGATTATCTTCTTTTCCTGATTTCACTATTGTCCCCTGTCTATCCTTGAAGTGGCTAGT CTCACTGATATTTTATTCTGCGTTTTTCAAAATTCATCGATGCTGATATTTTGTATCTATTGTCAGATTGTCTAGCCAGA ATGGTGTTTCTCGGAGGAGAAACCCAGGATACTAAAACTTGATGGGTCTCTACAGGTAGATTGTAGTTTCATGATTTATG TGGTATTTTATCTGGCAACTTCCTATAGTATAGGCAATTCACATTAATATATAACACATTGATATCTTAATCTGACCAGT GTACCGTTTAGAATTCTGATGCTCTTCTTTTCCCTTTTTTCCTTTCCCCTTCCCATCCAAACAGCTGAGTCCTGTGAAGC CCGCAGCCTCTGCCTAAACCAGAAGACCAGCTGAACCAGGGTTTGACAAAATGGCCCCCCTAGACGCCTCCACCTAGTGG ACCAAACATATGGAGACTAATGAAACTGGCCATGTCCGTTTTACCTTATTTCCCAAGCTTGATAACTCGTGTCCCATGAA CCTTTAAAGCCGGCTTGCCTTTGTGGCTGTTTTTTTAATTCCTGTTCACTGTCTTTAGATCTGAAACACCATGTAGCTAT GATCCTCTGGCAGTTGTATACCTGTATTAATATTATTGTGTTTTGTTTTCCTTATAGTTCATTGTTTCATGCAGCATGAA CTTTTATAGATATTTGAATTTGATGATGTTGATTCTTGGTAAGTAGACCTCATTACATCAAAATTTGGTAGGGCTTTTGT GTCATCTGTATTGCAGGGTTCAATATCTTACTATATCTTTAGCAAGGGTGTGCGGCGTCTTCTGAATGTGTAAATTCAGA TTTATGGCTGTAGTTTTGAGTACTTCAAATATGATGAATTAAAGGTATGAAGGCTGTTTTCCTACATGCTGTTGCTGTAG CTCAGATTTGATTCATGTGATTCTGACTGTAATGATCTAAACCACTGTGCTAGATTTGGAAGTACCATATTGCTTTTCAT TTTCTGTTTGGTTTATTTAGGCAACCGCCTAGTCCACACGTGTACTATATAGTGCAAATGCTTACATGGTGGACAAAAAG GGGAGACACACCATTGGTGAATATCTCTTTCATTGATCTAGTCTGTCATGCTTTTACCCTTGAAAATAATGTCTGGAAGT TTTGGCTTTAATGAACTAGGAACAGGAGGCTTGGAGTACCCGAGTTTCTTTGGGATGTTAATCTTGCCCCTTTTTTAGGT TGTTGGTTAAACATGAATCAAGTGTAACATGCCACTTTCATAATTCCTGGTATTTTAGAAATTATTCAAAACAATATTTG GAGATATAATGGATAATTGAAATTATGTGGCTTATTGTTCTCTCATTATTGCCCGGGTCTCCTGATCTGAAATTGAATGC TTCTGAAGTTTTCTTTGCGACTTAGTTGTCAAAGGAATCACATTGTAGAATTTCAATGGATGAGGTGGAAGAGTCTTTTT CCCGCCATTTGTTGCCTTTGATTAGAGAAGTTATGATAGTGGACTAGTGGTTCAAGAAAATGGGTAAAGAAAATGATTGA GCGGTTTATTTAATTCAACCCGATGTCTTGGTTAAACCGACTTTTTACATTCTATCTGGTAATTAAGATCTTAGTTGATC CAACGTATATAATAAAACCATTGCTCTGAAACAGCTTAAACTAGATCGTAATATGTTGACCATAAATAAAGAAAAAAAAC TAGATCAAAGTATGGTTAAGTGAAAGAATAGATGAAGAAGTTAGTGTGGAGAGATCTTACTTGGAAATAATTGGCTTGTT GTGATGATATTGTTAGCTAATGTCTTGAGCCAACTATGTGAGCAATGACCGGTCAAGTGTTTGATAAGTTGATGTATGTT ATGGTTGCTCTTCTACATTGCGCTCCAACAATTCGTTATATCATATGATGTAATGTGTCAAACAATCAATTTCCCCAAAA GTTTAAGTTATTAGTAAAGGTCACATGAGTGATTTCATATTATATTTCTAACACGCCTCATTACATAAGAGCTCACAATG AAGTGTGTACAATGCATAGTCTAACCTACCATATGTCAAAATTTCAATTTTTGGATACTGTGAGCAGCAAACAACCAGTT ATCTGAAAAGCATAAACTATTGGTAAAAGTTTAAGCATTTCTATTAATTTCCACATTCCCTTTGCTTGTAAACTATCTCT ACGTTCGCATTTTATACCTGGGTTCCTTTTCTACTTATCACTTTAAAATTATTCATATGCCCCTTATCTAATCGCATAAA TTTTGGAGATAATTGTTTTTTTTTTGTGTATGAACATTTTATTTTTATATTCGCGTTAATGTATGGAAACAATAAAACAA ATAGATGCGCTTAATTTGAACTGGTATGAATGATCAAATCTCAGAAAGATAAGTTTCTTATTATCGTGGGAATCTCAGTG GAGTTGGATGAAGACCATTATATTAAAAAAAAATAAAAATAAATGATAGAGCAAGTACGGCAGGTTGTCTCTGATTCACT ATTAATAATATAAAAAACAAACTTTCCTAAATGAGGAAAAAGATATAGCATTGTCAAGCAAAGGAAATTTCTTCTTCTGT TTTTTTAGTCAACTAGCAAATTTCAAATCAATGGATTTGTTTATTTTGATTAGGTTCAGTTTCTGGATGTGGATATCTTA ATTTATGCATGGCAACTAATCAGCATTATTATTGCATGGATGAATTTGAAGAGAGTGCCTATAAATGCCCAGTATTCTCC CATTCAAGTTCATCAATACATTCTATCCTTTCAAAGTCTTTTGAAGAATTGAGGTTCATATTAGTCACAATTCCTTCATT TGAGATAAAAATGAAGTCAAGTCCTGCTGAGCTAATTAGTGAGGCAAAGAGTTCCACCCAAAATAGCAAGATGAAGAGGG CAGTGTCTGTGCTTGATTTCATTCTGAGGCTAATTGCAGTTGTTGCCACCTTAGCAAGTGCCATTGCAATGGGAACAACG GATGAGTCACTTCCCTTCTTCACTCAGTTCATTCGGTTCAGGGCTGAGTATGATGATCTTCCTACTTTGAGGTGTGCATT TATGGGCTTCTATTATGAATGTCATTGAATTCATGTGTGTTTGTTTAAATGTTGGATGAATGTAAAAGAGTGTTTGCCCA ATCCAACCTCTCACATCTATTGACTTCTTAGCATTATAATGTGTATGAATATGCTTTGGGAAGGAGGCCAACAGAAAAAT AAACAATCGAATCATAACCCAAACCTTGCATTATTTTAGGCTACGACCATATTTTTGCCTCCAAACATGATCAGGATCAG GGTAAAAAGAAAACTACTATGCTAACCCATTTGAATTTTGATTTGAAAACAGGCTTTTTGTAGTTGCCAGTGCATTTGCA AGCGGCTATCTCATTCTTTCCCTACCATTATCCATCTTGCATATCACAAGGAGCAGCGCTCGAAGGACTAGAGTTATCTT GATTATCTTGGATATGGTAAGTCGTTAATACCAAATTTTGATATACTTCTATACATGTTTTTTTTTATAATAATCAAATT ATAACATGACAGTGAGTTGGAAAAGAAGTTGAGGAAGGTTATAACATCAAAAAAATAAAGTGAAAGTGACCAAGACTTTC ACATGACAACATGAGAGAATTTAAATATGAGGAAACATAATACAATTTTCACATGAGAGCATCCTAATCTTAACAAACTA AGTGTTAGTAGCATTTTTCTTCAGCTAATCGTCTTTTTCATCTTTCCGGGATGAAATTAATTGCATTTTTTATTTTTCAG GGATTAAATTGAATTTTATCTTTTGGAGCTAAAATAACAATTTTCATTTAGAACTAGTAGATATTACTAAAGTGACTTAC CAGTTATCTTAAAATGTGCAAAATGAGTATTTACTCCTAAATCTAAATAAATAAGCAACATAAATGGGTAATTTATGTCT GTTTAATATACAAGTTGAGAAGCCAGCAAATTCTGAAATGTTTAACTATATATATGCAGGTAATGCTAACTTCATTGACA GCTGCATCTTCTGCAGCAGCAGCTATTGTTTATTTGGCTCACAAGGGGAATGCCAAAGCAAATTGGTTTGCCTTTTGCCA ACAGTATGACTCTTTCTGTGAGCGCATATCTGGATCTTTGATTGGATCCTTCATTGCAATTCCACTGTTCATCATGCTGA TCCTTTTCTCTGCTTTGGTTCTCTCAAAACGTTAAACAAATCTTTGAACCACTCCAGCTACCAATACCATGACCAGACAT GCTTTGTTTGGATAAAAATGTGTGTGAGATGTATTCCACTTTGTTGTGTACTTTATATGTTCTCTGTTTGATGTTCAATA CTTGTATTGGTTTTCTTCACAAGCTCCAGCTTCAGCTTAATTTACTTGAACATTTATCACCTGTAATCCTGTATGTGCAT GTTTAGAAATCATTCTAAAGGAAAAATCAATTCTAAGGAAAGCTTCTGAGTAGTTTCTGAATGTCAGTTGATCCAAAATT TCTATAATTGCAACCATTGTTCATCAGGTATATGCTTCAACGAAGCTTGAACCACGATTTTTTGTCACACCACTATCATC CATTAACTTCCTTACCTTCGCAACCCCATCCCACTCACCTCGAGAAGCATATGTGTTTGACAACAGCACATAGTCACCAC TCTGGTCCGTTCTCATTTGAAGCAGCTTCTCATTCGCGTGTTTTGCCAACTCCATATCCCCATGAACTTTGCAAGCCCCA AGCAAAGTCCTCCAAACAATTGCATTAGGTTCAATCTTCATGGAGGCTATGAAGTCAAATGCTTCCTTCAAAAGTCCCGC ACGTCCTAGCATGTCCACCATGCACCCACAATGCCTAATGTTTGGCTCAATCTTATACTCACTTCTCATAAGATCAAAAT ATTGATAACCCTCATCAACTTTCCCTGCATGACTGCAAGCTACCAAAACACCAACAAATGTGATCTCATTTGGACAAATC TTGCTCTTTAGCATCTCCCTAAACAGACCAAGTGATTCCTCAGCATGGCCATGAAAAGCCAACCCGCCAATCACCGAGTT CCACGAGGTCACATCTTTATCTCTTATTGACCAAAACACATGAAGCGCTTCTCCAATGCTTCCACACTTAGCATACATAT CAACAAGAACATTCCCCAACAACGTGCTCAACACTCCCCTGCTCATCTCCATGACCTTGGCATGCATCTTTCGACCATTT TCTAAATCCCCTAACTCGACACAAGCAGACAACAAGCTCAGCATTGTCACTTCATCCGGGCGAACCCCGATTCCACTCAT CTCATCAAACAAATCCAATGCCGGTTGGTTCAAGTTGCAAAGCACGTAACCAGCAATCATTGCGTTCCAACTAACCACAT CCCTCACGGGAGCCTCATCGAAAAGCTTCCTTGCGCTAACCATCTCCCCTTGCTTGGCATACCCGGTGATCATCACGTTC CATGCAACCAAATCTTTGACAGGCATTTGATCAAACAACCTGCGCGCAACCTTCAAATCCCCTCGTTTAGCATACCCAGC AATAAGTGCAGACCAAGCAACCACATCACCCTTATCCGAATCATCAAATATTTCAGTGGCAACCTTCAAATCTCCACATT TAGCGTGAAATACCAAAAGGGTATTCCTCACAAACCGGTCTGAACCAAACCCCAGCCTGAAAACCCGACCATGAACCGCT GAACCGGTGTTGACCCAGAGAAGCTTGGTGCAAGCCTTGAGGACGAAGGGGAAGGTGAAGTGATCAGGCTTCACAGAACG GTGGTCCATCTGGGTGTACAATGCCACCGCCCGCAGGGGATCGAGGCTCTGAGATGAGCCTCGGATCATGGTGTTCCACA TGAAGGTGTCTGGTTGGGGAATTTGAGCGAACATTTGGTGTGCATATTCTGCGACGGTGGCGGCGGCTCTGGGGCCCACC AGTGACGTGGCGGCGGCGGAGACAAGTTTTCTGAGGAAACTAATGTTTGAAGTGAAACCGTTGATGATGATTAAAGCGTG GATCTGTTTGAGGGTTACGAGGTTGGTAATGGTGGTGGCTCTTGTTTTTCTGATCATTCTGCAGCAAAACTCTGTTTCAT TGCGTGGCTAGTTTTCATTCTAACACAAAATTAATGTCATTAGAACTACATTGATAATACTACATATATATATTTGTTGT AAAACTAAAAGCTGTCAAAAGGAGTTGGAGTATTTGGATTCAAATATAGAAGTTTTCTCTTCTGTGTCAGTCAAGAAAGA AGGCTCGAACAAAGTGTTTCTTTGAGAATTCAATAATGAAGATAGAGGTGATCCCTTCTCTAGTTTCACTTGTCTATTTC ATTTTAT
CDS sequence (LotjaGi1g1v0505200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACTAATCAGCATTATTATTGCATGGATGAATTTGAAGAGAGTGCCTATAAATGCCCAGTATTCTCCCATTCAAG TTCATCAATACATTCTATCCTTTCAAAGTCTTTTGAAGAATTGAGGTTCATATTAGTCACAATTCCTTCATTTGAGATAA AAATGAAGTCAAGTCCTGCTGAGCTAATTAGTGAGGCAAAGAGTTCCACCCAAAATAGCAAGATGAAGAGGGCAGTGTCT GTGCTTGATTTCATTCTGAGGCTAATTGCAGTTGTTGCCACCTTAGCAAGTGCCATTGCAATGGGAACAACGGATGAGTC ACTTCCCTTCTTCACTCAGTTCATTCGGTTCAGGGCTGAGTATGATGATCTTCCTACTTTGAGGCTTTTTGTAGTTGCCA GTGCATTTGCAAGCGGCTATCTCATTCTTTCCCTACCATTATCCATCTTGCATATCACAAGGAGCAGCGCTCGAAGGACT AGAGTTATCTTGATTATCTTGGATATGGTAATGCTAACTTCATTGACAGCTGCATCTTCTGCAGCAGCAGCTATTGTTTA TTTGGCTCACAAGGGGAATGCCAAAGCAAATTGGTTTGCCTTTTGCCAACAGTATGACTCTTTCTGTGAGCGCATATCTG GATCTTTGATTGGATCCTTCATTGCAATTCCACTGTTCATCATGCTGATCCTTTTCTCTGCTTTGGTTCTCTCAAAACGT TAA
Protein sequence (LotjaGi1g1v0505200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATNQHYYCMDEFEESAYKCPVFSHSSSSIHSILSKSFEELRFILVTIPSFEIKMKSSPAELISEAKSSTQNSKMKRAVS VLDFILRLIAVVATLASAIAMGTTDESLPFFTQFIRFRAEYDDLPTLRLFVVASAFASGYLILSLPLSILHITRSSARRT RVILIILDMVMLTSLTAASSAAAAIVYLAHKGNAKANWFAFCQQYDSFCERISGSLIGSFIAIPLFIMLILFSALVLSKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 83 | 83 | - | – | |
| PANTHER | 62 | 240 | 179 | 4.4E-77 | – | |
| PANTHER | 62 | 240 | 179 | 4.4E-77 | – | |
| Pfam | 77 | 223 | 147 | 7.2E-45 | ||
| TMHMM | 84 | 103 | 20 | - | – | |
| TIGRFAM | 84 | 235 | 152 | 1.5E-45 | ||
| Phobius | 84 | 102 | 19 | - | – | |
| Phobius | 103 | 126 | 24 | - | – | |
| Phobius | 127 | 150 | 24 | - | – | |
| TMHMM | 129 | 151 | 23 | - | – | |
| Phobius | 151 | 161 | 11 | - | – | |
| Phobius | 162 | 189 | 28 | - | – | |
| TMHMM | 163 | 185 | 23 | - | – | |
| Phobius | 190 | 215 | 26 | - | – | |
| TMHMM | 215 | 237 | 23 | - | – | |
| Phobius | 216 | 237 | 22 | - | – | |
| Phobius | 238 | 240 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0505200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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