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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0510100 |
| Transcript ID | LotjaGi1g1v0510100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Biotin carboxyl carrier protein of acetyl-CoA carboxylase; TAIR: AT5G15530.1 biotin carboxyl carrier protein 2; Swiss-Prot: sp|Q9LLC1|BCCP2_ARATH Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic; TrEMBL-Plants: tr|I3SZG2|I3SZG2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0510100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:102881143..102884822) extracted from Lotus japonicus Gifu genome v1.2.
AAGAAATCCAAGAGCAGTGACCAAAAAATGATGGTTCCAAGTTGGTTAACCTGTGTGACGTTGATGTTTGTTCTCATAGA TATCATCGAAGCCGTAGTGTAAAAACCAGAGTGTTGTGTTCCATCTTCGTTGTTTCCATCATCCATCATCCATCCCTAGC AGCTAGCACCACCTTCTCTTCATTCCCAACAACACTCTCATCATCGATCTCATCGCCCTTTCAAAACCCTTATATAACAC GCCTTACCGACTTCAACCCCCAACCCAGAAATCTCGGTTTTTCATTCGTGGGGTTGGTTCAGAATGGCGTCGTCTTTCAC TGTCCCTTGCCCCAAATGCCTCTCTTTTACCGGTTCTGGGTTGAACTCTCGGACCCCTCCGCCGCAGAACATGCAGATTC GGAGCGGGTTGGGGTTGAAGGAATCCGGGTCGTTTGGATCTTTGAGCCATGATTCAGCAGCACCAAATGGGATTCAGGTG TGTGGTTTTTGTCTAATGTGAATCTTGGTTTGAAATTTGAATCTGAATTGATAGTATTAGTACCACCATGTTGATTTCTT CTGATTTTGGATAGATGTCACTGGATGTGATGAATTGTTTTGAATGTGTGCTTGTATGCATGATGTTTGAGATGTTAATT GTGCACTAATTGTATGGTGAAAGTTCCAGAATGCTCAATTTGCCATTTCCCACTTGAAGGTTAGATAGTGATAGGGAGAA ATGTGATTCAAGTTTTTGGGCTGAGTATTTATAGTTTGAGCATATAATTTGATTAGTTATTGTATATGTTCTCATTTTAA CTATTATGTTATTTTCAGCATAAATTAGTAATACACACATCCCCTGCCAATGACTTTTCAGTGCTTAGTGTCCTTTACTT TTGTTGGGAAAAAATACAAAATTAAAAGGAAACCTTTTGTTCCTTGAAATCCTATTTAATTTGAAGATTTCGTGCGTGTT TGGATACACCAAGGTGAAGCTGAATTCATGATGGACGGCCACAAAAGCTAAGAGAAGTTGCTTTTGTCCACCGTGTATTC AACATGTTGAGAGTATTTATGTTATGGAATTTGGAATTGGGTTTACATTTCTAGTTCTAATATCGAGATTTATAGTTTTG AATTCCTGGTGATTTTTACACACAAATAATATGCTCTATAAAGAACTTCTGTATTTATTTGATTTCCTGAAATGGGGATG GCTCAAATTTTCGTCTTGTTATAGCCAGATGAATTGTGTTATTTTCATTGTATTTGGTGGATCTGTTACCGCTGGTGCAG CCCACGATCATGTAGCGTGTAGTTTTCAGCCGTCAGTCTATAACGTGCTTAAAACTGGAGAAGTCCATAGTTTATCCATT AAAACAATTTCAGTTTGTGAATTGTATTCTGATTCAGCGAGTACTAGTAATGAAGTTAAACTTTGTCAGACGCTTGGAAG TTGGAAGCTATATTTTCTTTCTGATAATTTTTATGATTCCATTGTTATTGTTGTGTCCTGCAGGCCCTTAACAGAAAACA ATATTCTGTCTGGAAGTTTCAAGCATTACCTAGTGAGGTTTGTTCACATTGAGTTTTACTCTGAACGAAAAAATGTCATC ATCTCTAATCTTGCTTTACAAATTATTTCTCCGTAAGATTAATTAACAATAACCATAATTACATGATTTGTATGTTTTAG GCTGCTACAGTTGGAAATTCTTCAAATTCTGCTCCTGTACTGGTCAAAGAACCTAAAGTCGCTTCACTAGAAGAGAAAGA TAATGGGAAACCCTCTGGTCCAAGCACTTCTACAGATGCATCTTCAATATCTGCTTTTATGAATCAAGTTTCAGACCTTG TTAAGTAAGGCTTGCACTCTGCCATGCTCTTGCGTGTTTGTTTTTTATTTTTAAATTGACATTAGGATATGAAACATTTT ATTCTTCAATATTAACATTGTTTCCTTTGGCAGACTTGTGGATTCTAAAGATATCGTGGAGCTGCAACTTAAGCAAGCGG ACTATGAGCTGATGATAAGAAAAAAGGAAGCTTTGCAGCCTCCACCAGCTACTTTTGTAGCTCCAGCATCACAGCCATAT CCCTATCCCGCACATGCTTCTCCGCAAGCACCACCACCACCACCACCTGCTGTTGCTTCTGCTCCTACAAAAGCAGCTCC TGCCCTTCCACCTGGAAAATCAAGCTCATCATCTCTTCCACAGTTGAAATGTCCAATGGCGGGAACCTTTTATCGGAGCC CAGCACCTGGTGAACCACCATTTGTCAAGGCATGTATCACTAGTACTGTATAACCATGTGTATTTTATATAGTTAACTTC TTTTGAGGTGTCTATTTTCCAATCATTTTACTAGGTATTAATGACTAATTATTCCATGTTTGTTGATGAAAATAATTGAT AGCCTCATTCTTTTGTTACTGTTTCAGGTGGGAGATAAAGTGCAGAAAGGGCAGGTTATTTGCATTATTGAGGCCATGAA ACTGATGAACGAAATTGAAGTATGTATCCATTTTATGCTGGTTTTGTATATCATTCTGCTTAACTTTCTCTTTTTACTGT TATTACTATTCCTATTACTATCTTGGTTTTTTTTCTTCTGTTCATTCTGGAGATATATCTCATACTATTTATATTACTAT TCTGGGCTTTAATGGGACAACATGAGAAAAAATTGGAGTAGCATAAATGAGAATGTTAAGATGGATGTGTGGCCACACTA GAAAGGATAGGAATAAGATACACAATAATTGTAAAGAGGTGATATTGGGGTGTTTCGTATCGATGAGAAGCTAATGGAAA ATCAGTTAAGGCATGTACAAAAAAGACCTTTGCAGGCACCTGTGAGAAGGGTTGATAACATAGTCTTTAGTTCCGTGAAG AGGGGCAGAGGAGGCCAAAAGAACATTGGAATATATTAAAAATGACCTCATTGACAAGACTTTTGTGGGATAAGACTTTT GTTTTCATTGTTGTCACAATTTAGATTATGGTCCCATATTGTAAAATACGTAAAGTGATAAATCCATATCAAAGTTTCTT AGTAAAGCAAACACAAACAAATCTATAAAAGCTGTATGCACAATGCACACTTTGTGTTTCCTACTTTCTCATTCTTTCAT TGCTTCCCAGGCTGATAAATCAGGAACAATAGCTGAGGTACTGGCGGAGGATGGGAAACCAGTCAGTGTCGACTCGGTAT GCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACTTTGACTCATTTCTCAAACTAAAATAC TTGTGCACCCTGCATGCAGCCTCTTTTTGCAATTGCACCATGAGTTCCAGAAGGTACCTTACTCCAAAGTTTGATGGAAA CCTCTGTTGGCTCAAGACTGATAATATCACTAGATTTTCATTATTCAGATATTTCTTGTGCAATAATGTTTGTCCCATTT TAGGAAAATCCTTCTCCCTATTTATTCAAGAGACATTCTAAGACATAAAAGCCACGGCATATCAGAAGGAATGTTGGAAT TTGTACTTCTAAACAGTTTTAATATTGTAGTCTCAAAAGATTTTTATACATTTGCTTTCTCAAGTGCCCATCATTCTCGT TGAGCACCCTGGCTGGTTTTACAAGAACTTGCTACAGCATGGTTTATTTGCAATAGAAGATTAATTACAATCAAAACAAC
CDS sequence (LotjaGi1g1v0510100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCGTCTTTCACTGTCCCTTGCCCCAAATGCCTCTCTTTTACCGGTTCTGGGTTGAACTCTCGGACCCCTCCGCC GCAGAACATGCAGATTCGGAGCGGGTTGGGGTTGAAGGAATCCGGGTCGTTTGGATCTTTGAGCCATGATTCAGCAGCAC CAAATGGGATTCAGGCCCTTAACAGAAAACAATATTCTGTCTGGAAGTTTCAAGCATTACCTAGTGAGGCTGCTACAGTT GGAAATTCTTCAAATTCTGCTCCTGTACTGGTCAAAGAACCTAAAGTCGCTTCACTAGAAGAGAAAGATAATGGGAAACC CTCTGGTCCAAGCACTTCTACAGATGCATCTTCAATATCTGCTTTTATGAATCAAGTTTCAGACCTTGTTAAACTTGTGG ATTCTAAAGATATCGTGGAGCTGCAACTTAAGCAAGCGGACTATGAGCTGATGATAAGAAAAAAGGAAGCTTTGCAGCCT CCACCAGCTACTTTTGTAGCTCCAGCATCACAGCCATATCCCTATCCCGCACATGCTTCTCCGCAAGCACCACCACCACC ACCACCTGCTGTTGCTTCTGCTCCTACAAAAGCAGCTCCTGCCCTTCCACCTGGAAAATCAAGCTCATCATCTCTTCCAC AGTTGAAATGTCCAATGGCGGGAACCTTTTATCGGAGCCCAGCACCTGGTGAACCACCATTTGTCAAGGTGGGAGATAAA GTGCAGAAAGGGCAGGTTATTTGCATTATTGAGGCCATGAAACTGATGAACGAAATTGAAGCTGATAAATCAGGAACAAT AGCTGAGGTACTGGCGGAGGATGGGAAACCAGTCAGTGTCGACTCGCCTCTTTTTGCAATTGCACCATGA
Protein sequence (LotjaGi1g1v0510100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSFTVPCPKCLSFTGSGLNSRTPPPQNMQIRSGLGLKESGSFGSLSHDSAAPNGIQALNRKQYSVWKFQALPSEAATV GNSSNSAPVLVKEPKVASLEEKDNGKPSGPSTSTDASSISAFMNQVSDLVKLVDSKDIVELQLKQADYELMIRKKEALQP PPATFVAPASQPYPYPAHASPQAPPPPPPAVASAPTKAAPALPPGKSSSSSLPQLKCPMAGTFYRSPAPGEPPFVKVGDK VQKGQVICIIEAMKLMNEIEADKSGTIAEVLAEDGKPVSVDSPLFAIAP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 289 | 289 | 7.7E-135 | – | |
| PANTHER | 1 | 289 | 289 | 7.7E-135 | – | |
| MobiDBLite | 16 | 36 | 21 | - | – | |
| MobiDBLite | 16 | 37 | 22 | - | – | |
| MobiDBLite | 94 | 117 | 24 | - | – | |
| TIGRFAM | 124 | 287 | 164 | 5.1E-42 | ||
| MobiDBLite | 162 | 213 | 52 | - | – | |
| MobiDBLite | 165 | 194 | 30 | - | – | |
| Gene3D | 212 | 287 | 76 | 1.1E-29 | – | |
| ProSiteProfiles | 212 | 288 | 77 | 26.048 | ||
| Pfam | 214 | 287 | 74 | 4.2E-25 | ||
| CDD | 214 | 287 | 74 | 2.7774E-27 | – | |
| SUPERFAMILY | 214 | 287 | 74 | 3.8E-23 | ||
| PRINTS | 217 | 230 | 14 | 1.8E-20 | ||
| PRINTS | 234 | 248 | 15 | 1.8E-20 | ||
| ProSitePatterns | 244 | 261 | 18 | - | ||
| PRINTS | 249 | 262 | 14 | 1.8E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Acetyl-CoA carboxylase activity | Catalysis of the reaction: ATP + acetyl-CoA + HCO3- = ADP + phosphate + malonyl-CoA. | ||
| Biological process | Fatty acid biosynthetic process | The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. | ||
| Cellular component | Acetyl-CoA carboxylase complex | A protein complex that catalyzes the first step in long-chain fatty acid biosynthesis. For example, in E. coli the complex is heterohexameric and composed of biotin carbonyl carrier protein, biotin carboxylase and the acetate CoA-transferase complex. |
Expression pattern of LotjaGi1g1v0510100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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