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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0510600 |
| Transcript ID | LotjaGi1g1v0510600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Expansin; TAIR: AT5G39280.1 expansin A23; Swiss-Prot: sp|Q9FL79|EXP23_ARATH Expansin-A23; TrEMBL-Plants: tr|I3SEA3|I3SEA3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0510600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:102982012..102983398) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTCTGAGTCTTGATTAATTCACCAGACATGGCCATGACTCCCTGTTTCCTTGCTTTAGCCATTTTCATTGTTCTTTT TGTTCAAACCATGTCAGCTGGTATTGACCCAAATTGGTATGCTGCTCATGCAACCTTCTATGGAGACATGAGTGGTAAAG AAACCATGCGTAAGTGTACAACTTCCCATCTAATTTCTTTCTCGTAAAAATCATGATCATGCATACTCATCAAGTATGAG TTATTTTCTAATTTTGATATATGATTAATCATTTGGATTGAAACACTCACTTGTGCTTCTTTGAATGCATTCGGGAATTT TTTTTTATGATTATTCACGCACATTTATGGGCACGTTTGTCTCAGTTTTTTCAGAAAATAATCACTTATTTTTTTGAAAA ATAATCTCTTACATATATTTTTAACTGTTTCTGTATACTTTTGATAAAAAAACATAATTTGCAAAAAAATTAAATTAAAT TATTTCATAGAGATATTTCTTTTTTATATTCGTAAACAAACATATCAATTTCAGTTTCTCAACAATTTCTTAAAATAAAA TAAATTTTTAATTCAACTTGAAAATCACTTATTATTTAAGCGGACACAAATTATTATCCAGTATCAAAGGTTGATAACTT CATAAGCGTATAGTGTAATCTCATTATTTCTATATATAACAATTTATATATTTATTTGGCATGCATGCAGAGGGTGCTTG TGGTTATGGTGATCTTTTCAAACAAGGGTATGGGCTTAATACCGCAGCACTAAGCACAGCACTATTCAACCATGGACTTA CTTGTGGTGCATGTTTTGAGATCATGTGTGTCAACTCCCCCTTTTGCATAAAGAACGCAGGCACAATCAAAATTACAGCA ACAAATTTTTGTCCTCCCAATTATACCAAGAAAGTTGACATTTGGTGCAACCCGCCACAAAAACACTTTGACTTAACCAT GAAAATGTTCACCACAATTGCTGCATACCGTGCTGGGGTTGTCCCTGTTCAATATCGCCGTGTTCCATGCAACAAAATTG GGGGTGTCAAGTTTGAGCTTAATGGGAACCCTAATTTTTTGCTTGTGTTGGTGTACAACGTTGCAAATGCTGGAGATGTT TCTAGCATGAGTGTCAAAGGATCCGGAACAGGATGGCTTCCAATGTCACACAATTGGGGACAAAATTGGAATGTCGGAAC TAATGTGGCAGGACAAGCCTTGTCATTTAGGGTTACTACTAGTGATGGTAAAACCTTGTACTTTATGAATGTTGTCCATC CTCGATGGCTATTTGGACAGACGTACCAGTCCAACTTAAATTTTTAGATATTCTTTGATTTAGTTGATAATGACATGTGG TCATCGATTAAATTTGTAATTTCAAAA
CDS sequence (LotjaGi1g1v0510600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCATGACTCCCTGTTTCCTTGCTTTAGCCATTTTCATTGTTCTTTTTGTTCAAACCATGTCAGCTGGTATTGACCC AAATTGGTATGCTGCTCATGCAACCTTCTATGGAGACATGAGTGGTAAAGAAACCATGCAGGGTGCTTGTGGTTATGGTG ATCTTTTCAAACAAGGGTATGGGCTTAATACCGCAGCACTAAGCACAGCACTATTCAACCATGGACTTACTTGTGGTGCA TGTTTTGAGATCATGTGTGTCAACTCCCCCTTTTGCATAAAGAACGCAGGCACAATCAAAATTACAGCAACAAATTTTTG TCCTCCCAATTATACCAAGAAAGTTGACATTTGGTGCAACCCGCCACAAAAACACTTTGACTTAACCATGAAAATGTTCA CCACAATTGCTGCATACCGTGCTGGGGTTGTCCCTGTTCAATATCGCCGTGTTCCATGCAACAAAATTGGGGGTGTCAAG TTTGAGCTTAATGGGAACCCTAATTTTTTGCTTGTGTTGGTGTACAACGTTGCAAATGCTGGAGATGTTTCTAGCATGAG TGTCAAAGGATCCGGAACAGGATGGCTTCCAATGTCACACAATTGGGGACAAAATTGGAATGTCGGAACTAATGTGGCAG GACAAGCCTTGTCATTTAGGGTTACTACTAGTGATGGTAAAACCTTGTACTTTATGAATGTTGTCCATCCTCGATGGCTA TTTGGACAGACGTACCAGTCCAACTTAAATTTTTAG
Protein sequence (LotjaGi1g1v0510600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMTPCFLALAIFIVLFVQTMSAGIDPNWYAAHATFYGDMSGKETMQGACGYGDLFKQGYGLNTAALSTALFNHGLTCGA CFEIMCVNSPFCIKNAGTIKITATNFCPPNYTKKVDIWCNPPQKHFDLTMKMFTTIAAYRAGVVPVQYRRVPCNKIGGVK FELNGNPNFLLVLVYNVANAGDVSSMSVKGSGTGWLPMSHNWGQNWNVGTNVAGQALSFRVTTSDGKTLYFMNVVHPRWL FGQTYQSNLNF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| PANTHER | 12 | 251 | 240 | 1.5E-120 | – | |
| PANTHER | 12 | 251 | 240 | 1.5E-120 | – | |
| Gene3D | 16 | 154 | 139 | 3.5E-42 | ||
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 251 | 229 | - | – | |
| PRINTS | 28 | 43 | 16 | 4.6E-40 | ||
| SUPERFAMILY | 28 | 176 | 149 | 3.84E-49 | ||
| PRINTS | 46 | 64 | 19 | 4.6E-40 | ||
| ProSiteProfiles | 47 | 158 | 112 | 27.623 | ||
| PRINTS | 59 | 73 | 15 | 8.0E-56 | ||
| Pfam | 64 | 148 | 85 | 6.3E-19 | ||
| SMART | 64 | 148 | 85 | 6.8E-50 | ||
| PRINTS | 68 | 86 | 19 | 4.6E-40 | ||
| PRINTS | 99 | 109 | 11 | 8.0E-56 | ||
| PRINTS | 116 | 133 | 18 | 8.0E-56 | ||
| PRINTS | 133 | 146 | 14 | 8.0E-56 | ||
| PRINTS | 141 | 157 | 17 | 4.6E-40 | ||
| SUPERFAMILY | 157 | 247 | 91 | 4.32E-32 | ||
| Gene3D | 157 | 251 | 95 | 1.4E-25 | ||
| PRINTS | 157 | 169 | 13 | 8.0E-56 | ||
| Pfam | 159 | 235 | 77 | 2.1E-25 | ||
| ProSiteProfiles | 168 | 247 | 80 | 21.393 | ||
| PRINTS | 169 | 190 | 22 | 8.0E-56 | ||
| PRINTS | 195 | 209 | 15 | 4.6E-40 | ||
| PRINTS | 204 | 225 | 22 | 8.0E-56 | ||
| PRINTS | 233 | 249 | 17 | 8.0E-56 | ||
| PRINTS | 233 | 247 | 15 | 4.6E-40 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Extracellular region | The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. | ||
| Biological process | Plant-type cell wall organization | A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. |
Expression pattern of LotjaGi1g1v0510600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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