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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0510700 |
| Transcript ID | LotjaGi1g1v0510700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Expansin; TAIR: AT5G39280.1 expansin A23; Swiss-Prot: sp|Q9FL79|EXP23_ARATH Expansin-A23; TrEMBL-Plants: tr|I3SEA3|I3SEA3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0510700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:103018418..103020313) extracted from Lotus japonicus Gifu genome v1.2.
CTCCTGAGTCTTAAATTGTCAGTCATGGCCATGTCTTCCTATTTGGTTCCTCTGGCCATTATCGTGGTTCTTTTTGTTCA AACCGTGTCAGCTGGTAATGGTATTGACCCAAATTGGTATGATGCTCGTGCAACCTTTTATGGGGACATGGGTGGTAAAG GAACCATGCGTAAGTATACAACTTTCCCTTTGATTTCTTTCTCTTAAATATCATGATTATGCATTCTAATCAAGTATTCC TTCTGTTTCAATATAAGTGTCCACTTAGAGAAGATGCACATATATTAAGAAATGTAATTAATTTTGCTAATTTCTTAAAA CATATCATTTGTTTCTCTATTTTACCCTGTACAATGTACTTTTATTTCTCCTCATTTATTCTTCTCATAGGGGTATTATA TGTAAAAACTTCAATTAATACTCCATTGAAATTCTAAGTGGACAGTTATTGTGAAATAATTTTTTTTTTCTCTAAATGAA CAGTTATTATGAAACGGAGAAAGTACGAGTTATTTTGATGATTAGTCACGCAGCGTTTATCTTTGTTTATTTCTAAAAAT AATCTTTTATTTTCATAAAAGTAACTACTTATGTATTTTTAGAACTATTTATGTATACTTTTGATAAAAATATATTTTTT TAATTTTTTAAGCTATTCATAGTAGTTTTTTAAATAATAAAATATTTATTGTGGATTTCTAAAGTGAAAGGTAATTTTAT ATTTGAAAACAAACTAAATCAATTTGTCCCTGAATGATAGTTCAAGTGGTAATCGATATGGGACATATGGGTTGAGATGA GTAAGGTCCAAGATCAATCCCTGGAGGATGCAATTTATCGTCCCAATGTAAAAAAAAAATCAATTTCTGCTTTTCAAAAA AGTTCTAAATAAAATAATTTTTTATTCAACTTTAAAATCACTTAATTATTTTTTATTTTAGATTTTCTCTTGTAAAAAAT AATTCATTATTTAATTTTTTTCACTTGACACAAACAAGTATCAAAGGTGTATCTTCATATTTTACATACATAGTTATTTC ATTGTTTTTATCTGGTTGACATGCAGAGGGTGCTTGTGGTTATGGTGATCTCTTCAAAGAAGGATATGGGCTTAATACTG CAGCCCTAAGCACAGCACTATTTAACCATGGACTCACTTGCGGTGCGTGTTTTGAGATTAAGTGTGTCAATTCCCCTAAT TGCATAAAGGGTGTAGGCACAATCAAAATTACAGCAACAAATTTTTGTCCTCCAAATTACAGCAAGACCGTTGACATTTG GTGCAACCCACCACAAAAGCACTTTGACTTCACCATGAAAATGTTCACCACAATTGCATTATACAAAGCTGGAGTTATCC CTGTTCAATATCGTCGTGTTCCATGCATTAAAGTTGGGGGTGTCAAGTTTGAGATTAAAGGGAACCCTTACTTTTTCATG GTTTTGGTGTACAATGTTGCAAATGCTGGTGATGTTTCTAGCATGAGTGTCAAAGGTTCCAACACTGGATGGCTTCAAAT GGCACACAATTGGGGACAAAATTGGGATGTAGGAACTAAATTGGTAGGACAAGCCTTGTCATTTAGGGTGACTACCAGTG ATGGTAAAACCTTAGACTTTGTTAATGTTGCCCCTCCCCAATGGCAATTTGGACAGACCTATCAGTCCAACATAAATTTT TGGCTTAAATACTCTAGGGGTCCCTGAAATTGTACCCCGTATCAAAATAAGTCCCTGAAATTTTTTTTTCCGATTCCGGA TCCCTGGAATTGTTTTTTTAATCAGAATAAGTCCCTACACATGTTTTTAGCCTATCTGGCAGATTTTTTGCTGACTCAAC ATTTACACATGGCTTTTTCATTTATTTTAAATACACATGGAATAAAAATAAAAAAA
CDS sequence (LotjaGi1g1v0510700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCATGTCTTCCTATTTGGTTCCTCTGGCCATTATCGTGGTTCTTTTTGTTCAAACCGTGTCAGCTGGTAATGGTAT TGACCCAAATTGGTATGATGCTCGTGCAACCTTTTATGGGGACATGGGTGGTAAAGGAACCATGCAGGGTGCTTGTGGTT ATGGTGATCTCTTCAAAGAAGGATATGGGCTTAATACTGCAGCCCTAAGCACAGCACTATTTAACCATGGACTCACTTGC GGTGCGTGTTTTGAGATTAAGTGTGTCAATTCCCCTAATTGCATAAAGGGTGTAGGCACAATCAAAATTACAGCAACAAA TTTTTGTCCTCCAAATTACAGCAAGACCGTTGACATTTGGTGCAACCCACCACAAAAGCACTTTGACTTCACCATGAAAA TGTTCACCACAATTGCATTATACAAAGCTGGAGTTATCCCTGTTCAATATCGTCGTGTTCCATGCATTAAAGTTGGGGGT GTCAAGTTTGAGATTAAAGGGAACCCTTACTTTTTCATGGTTTTGGTGTACAATGTTGCAAATGCTGGTGATGTTTCTAG CATGAGTGTCAAAGGTTCCAACACTGGATGGCTTCAAATGGCACACAATTGGGGACAAAATTGGGATGTAGGAACTAAAT TGGTAGGACAAGCCTTGTCATTTAGGGTGACTACCAGTGATGGTAAAACCTTAGACTTTGTTAATGTTGCCCCTCCCCAA TGGCAATTTGGACAGACCTATCAGTCCAACATAAATTTTTGGCTTAAATACTCTAGGGGTCCCTGA
Protein sequence (LotjaGi1g1v0510700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMSSYLVPLAIIVVLFVQTVSAGNGIDPNWYDARATFYGDMGGKGTMQGACGYGDLFKEGYGLNTAALSTALFNHGLTC GACFEIKCVNSPNCIKGVGTIKITATNFCPPNYSKTVDIWCNPPQKHFDFTMKMFTTIALYKAGVIPVQYRRVPCIKVGG VKFEIKGNPYFFMVLVYNVANAGDVSSMSVKGSNTGWLQMAHNWGQNWDVGTKLVGQALSFRVTTSDGKTLDFVNVAPPQ WQFGQTYQSNINFWLKYSRGP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| PANTHER | 10 | 253 | 244 | 2.8E-122 | – | |
| PANTHER | 10 | 253 | 244 | 2.8E-122 | – | |
| Gene3D | 17 | 155 | 139 | 5.7E-42 | ||
| Phobius | 19 | 23 | 5 | - | – | |
| Phobius | 24 | 261 | 238 | - | – | |
| PRINTS | 30 | 45 | 16 | 1.4E-40 | ||
| SUPERFAMILY | 30 | 178 | 149 | 1.01E-46 | ||
| PRINTS | 48 | 66 | 19 | 1.4E-40 | ||
| ProSiteProfiles | 49 | 160 | 112 | 27.289 | ||
| PRINTS | 61 | 75 | 15 | 1.1E-57 | ||
| Pfam | 66 | 150 | 85 | 3.9E-18 | ||
| SMART | 66 | 150 | 85 | 2.3E-48 | ||
| PRINTS | 70 | 88 | 19 | 1.4E-40 | ||
| PRINTS | 101 | 111 | 11 | 1.1E-57 | ||
| PRINTS | 118 | 135 | 18 | 1.1E-57 | ||
| PRINTS | 135 | 148 | 14 | 1.1E-57 | ||
| PRINTS | 143 | 159 | 17 | 1.4E-40 | ||
| PRINTS | 159 | 171 | 13 | 1.1E-57 | ||
| SUPERFAMILY | 159 | 249 | 91 | 1.31E-33 | ||
| Gene3D | 160 | 254 | 95 | 5.8E-27 | ||
| Pfam | 161 | 238 | 78 | 4.9E-26 | ||
| ProSiteProfiles | 170 | 249 | 80 | 21.925 | ||
| PRINTS | 171 | 192 | 22 | 1.1E-57 | ||
| PRINTS | 197 | 211 | 15 | 1.4E-40 | ||
| PRINTS | 206 | 227 | 22 | 1.1E-57 | ||
| PRINTS | 235 | 251 | 17 | 1.1E-57 | ||
| PRINTS | 235 | 249 | 15 | 1.4E-40 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Extracellular region | The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. | ||
| Biological process | Plant-type cell wall organization | A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. |
Expression pattern of LotjaGi1g1v0510700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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