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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0517600 |
| Transcript ID | LotjaGi1g1v0517600.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Regulator of chromosome condensation (RCC1) family protein; TAIR: AT3G02300.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|K7MV24|K7MV24_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0517600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:104107920..104112556) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATATTGATGCAATTTTTGGGGCCATCAAACCTGTGAACGTTCCAAGGAAGAGTGCTATTTATGTGTGGGGATACAA TCAATCCGGGCAGACAGGTCGAAAGGAGGAAGACGATCAGTTGAGGATTCCAAAACAGCTTCCTCCTCAGCTGTTTGGAT GTCCAGCTGGTACCAATGTCCGGTGGTTGGATGTTGCTTGTGGTCGCGAGCACACAGCAGCAATAGCCTCTGATGGCTTG CTTTATACTTGGGGTTTGGACTTTTTACTCTTATTTGTTTTACTGATTGTTCATTGACTTCATTCATTTAAACACACTGT TTTTAAGTGTTGGAGCTTTTTTCCATGATTGTTATTTCTGTGACCGACAACGGAAAAGAAGGAAGAAAAGGGAGCGGAAT GCGACTCGACAAGAGGGAAAGTCCTCTGAAAGCCGTGTTATTTAGGCAGTCAAACACATAAAAATAATGACAAACCTGGT GCTATAAAGCTCCCGCTATGCGCGAGGTCCAGGTCGGGTCAGGTCCACTTTGTGGATCTAATGTAGACAGCCTTACCTTG CATTTTTGCAAGAGGCTGATTCCACAGCTCAAACCTATGACTGAAAAGTCACATGATAGTGACCTTACCGTTGTGTCTAG GTTCGTCCTCTCAGTCAAACATATATGAATTAAATAATTTTAGATTGAATTTCGTATCCATGATTAGACCCTGATATGGA TTAAATGAGGCGGTGTCATCGAAGTGGTGGCTAAGGGATGCCTACTAGGGTGTGTTGGACCTCCTTCTTGGAAATTGCAA GCAAATGTCTCAACCATGTAACTAAGTTCATGGGACTTCCCTTCCCTAATTCAAACGTATACATTGAGTTTTAGTCCAAT GTTCAAACGTCAGAAGCACAGTTGACAACTGACATGTATTTGTTAATGAGAGAGTAAAAACAGTTATGTAATTCGAATTA GTAACCACAACAAGTATTATTGGGCTTTGTATCTCTAGTGCGAAGATTCATGCAGTAAGCTTATTTCACGCACTGAAAAC TCAAACCAGGGGATGTTTTTGTTGGTTTGGAAAATAGAGGGACCAAAATTGCAAGTTTAATTTTAGGAGTGGGACATACT CTCATTGATTAATGGTCTTGCCAGAACTGGATTTTAGTATTCTACTGTGGCAAACACGTGTATGATCAGTGTTCTCACTA CAATTCATATATGGAATTGATATGTATCAGTAAAGACTATCTTTGCCCTGCACCTGCAGTTCTTTCCTTATTGACAATTG TGATTAGAATTCATGGCATTTGATGATTTTTACTAATAGGGAACAATATGCATAAGAATTAAATAGCCTTTAATAACTTT TAATTTGTTTTTCCTTTTTTTAAGGTACGATTCTAATTGTATGTTTGTTCGCTATTACTGATAGTTCATATAGCAAATGG TTTGAAAACATGAAAGTGCCAAGTGTCGAAGATTCATGCATATATTTCATATATTAGGGGCTAATGACTTTGGTCAATTG GGTGATGGAACGGAGGAGCGAAGGAAGCATCCTAAGAAAGTAAAAGAATTAGAGTCAGAGTTTGTAAAATCTGTATCCTG CGGAGCACATTGTTCTGCTTGCATTGCAGACCCTCGTGAAAATGATGGTACCGTCTCGACTGGAAGGCTCTGGGTGTGGG GCCAAAATCAGGTAATACTTTTTTAAGGGTTAATGCTTGTTATAATATTCTTCATTGTCAGAAATCCTTCATCTTCAACT TATTTTTTTATATTTCAGGGATCAAATCTTCCTAGATTGTTTTGGGGGGCTTTCGAACCTAACACAGTAAGTATTTATGT CTGAGACTGAGTTTGAGTGCATACCAGTATATTTATATGTATATATTTGCATGTATGTAAACATTCATAATGACTAAAGG AAATAATGCGTGATTTATTTGATTTATTTGATTATTTTGTTATTTTCATTGTTTATATGGAAAAAGATCGAAATTCCACG TTCTATTTTTATTTTACTAGGTAGAGAGCTGTGATAAAGAAGAAGTACACTTAAATAGGAATCTTTCCAAGCAATGCCTA ATCACCTGCCTTTATTTTTACTCCTAGAGTCAACCCCACCATAAAATCTGACTACTGGTGTTGGATATACATAGAGATAC TTTTGTTCTTACACATTTGTTACCCATTATTTTTTGCCATGCCTTACTATGATTTTAGGTTCTTCTAAACATTGTCTATT GTATAGTTTATACATTACTTTTGTACTCTGTAATATGCTCAACATCACTTTTTTCCACCATATGTAAAATCTATTCGTTA GGTCTAATATGTTCTGAGGCCCATGAAGGATGATAATTGCTTCTTTGGTGTCATGTAACTTCTTCCATGAATGTAATTCT TTCCTGTATTCTTGTTTCCCAAATTTTTGTTAGCCTTGCTAGGAATTATGATATATGAATACCTCTATTCTCCTAGGTTT GAGTTTAATTTTATTAAATGCTATGTAGAATGCAGTCTCTCTTCCTTACCTTTGGGGGATACAATATTTATATGTTGCAA TTTTTATCTTGTTTACTTTTCTCCTATCATTCATATTATCATACTTACAGATTATTCGTGAAGTGTCATGTGGAGCTGTC CATGTGGTTGCTTTATCTGAGGAAGGCCTACTACAAGCTTGGGGTAATTCAGTAATTGCCTTGCTTTGTTCGCTATTTTC TTTATAAATATATTATTTGTCATATTTGTTTTGTAAATTTTATGTAATAATTGCCTTTATGGAGTTGACATGGTTAGAGG CTTATAAATTCACTCAGCATTAAATGTAGAAAAGTAAATCAAGCATTCACAAAGTGGGTTTCTGCTTTCATATGACCTAC TAATCAGGTTTTTCTCACTGTTTTCATAAACCAGGCTATAATGAGTATGGTCAACTTGGCCGAGGTGTTACTTGTGAAGG ACTACAGAGGCCTCGTATTATAAATTCTTATGCTAAGTTCCTTGATGAAACCCCTGAGCTTGTGAAGATTACCACAGTGT CATGCGGGGAGTACCACACAGCAGCCATTTCTGATAAGGGCGAGGTGTAAGTGATTTGAAGGACTTTCTTGATGGATATA AATTTAAACATGAAATTGTGGTTTTCCGCATGACACATTAGGGAATCTCACATCAGGAGACAAGATGCAATGGAAATGCT GTTGAGCTTAGTAATTTATTTGTGTGTTTGCAGAAGATACTCAATCTTTGTTTAGTTTCTTTTGCTCATTTGATTTAATA CATGAACACAATGGTGTATTTATCTAGCCTAAGGAATAACTTGTTTTGCTTATATGTATTGTTTGGGATCCATAAACAAT ATTAAAAGTGATTACTTATGGAATTTAGCTTCTTGTGATAATATTTCGTCACTTTTAATATTTGTCCTTCTACCTTGCAG TTACACATGGGGGCTAGGAAATATGGGCCAGCTTGGGCATTCTTCACTTCAGTATGGGGATAAAGAGTTAATACCAAGGA GGGTGGTTTCCCTCGATAGTATTTACATAAAAGACGTGGCGTGTGGTGGTGTACATACATGTGCTTTAACTCAGGGAGGA GCTCTTTATGCTTGGGGTGGCGGTCAATCTGGACAGTTAGGCCTTGGTCCCAACACCGGATTGTTCTCGTGTGTTGCTAA TGACTCTCAGACGTTTTTCCGAAACATTCCGGTTTTAATTGTTCCGAAAGGCGTGCAACTCATTGCTTGCGGACATTCCC ATACTCTTATTTCTATGAGTGATGGTCGAATTCATGGATGGGGTTACAATAATTATGGTCAGGCAGCCAATGAGAAATCT ACATATGCTTGGTATCCATCACCAGTTGACTGGTATGTATTTCTAGCTTAAGTAACTTCTTCATTATAATAAAAATAGGG GCAAACTTGGTGCTATAAAGCTCTTGCTATATGCATGAGATCCAGGAGGGGCCGGACCCACTTTGTGGATCTAGTGTAGG CAGTCTTACCTTGCATTTTTGCAAGAGGCTGATTCCACGGCTTGAACCTGTGATTGCATCGCACAACCTTACTGTTGCGC CAAGACTCGCCCTCAACATCTTCATGATAGCATAGTTTTTTATTTTAAACTTCCTCAATCACAGGTGTGTTGGGGAGGTT AGAAAACTAGCTGCTGGTGGGGGCCATTCAGCTGTGTTGACTGATGCTTGTTCATTAAAGGAGTTGTGTGAGTTTGTACT TGCTGAGAGTATGACTTTATCTAATGCTGCTAAAGTTGAGGATATTGCATACAGAACCGGCTCAGACGCCTTAGCTCGCC TTTGCGGAAGACTCAGGTACTTCATGTGATACATGTGATTCTAATATGCTCTTCAACTCAATTAGAGTATCATCAGTTTT AATTAGGATTTGAAAAGACTAATAGTTAACAATTGGTAATTCATTTTCAAAATGATAAACTGCATACTTTGTGATATCCG TTATCTGAAGTTCTTTTGGTAATAAATTTATACACTCTCAAAGTCCTTCTTACCCATGTACTTCAAAGGGAAAACGTGGT GCTATAAAGCTCCCGCTATCCGGGAGGTCCTTGAATGGGTCAGACCCCACTTTGTGGATCTAATGTAGGCAACCTTA
CDS sequence (LotjaGi1g1v0517600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATATTGATGCAATTTTTGGGGCCATCAAACCTGTGAACGTTCCAAGGAAGAGTGCTATTTATGTGTGGGGATACAA TCAATCCGGGCAGACAGGTCGAAAGGAGGAAGACGATCAGTTGAGGATTCCAAAACAGCTTCCTCCTCAGCTGTTTGGAT GTCCAGCTGGTACCAATGTCCGGTGGTTGGATGTTGCTTGTGGTCGCGAGCACACAGCAGCAATAGCCTCTGATGGCTTG CTTTATACTTGGGGGGCTAATGACTTTGGTCAATTGGGTGATGGAACGGAGGAGCGAAGGAAGCATCCTAAGAAAGTAAA AGAATTAGAGTCAGAGTTTGTAAAATCTGTATCCTGCGGAGCACATTGTTCTGCTTGCATTGCAGACCCTCGTGAAAATG ATGGTACCGTCTCGACTGGAAGGCTCTGGGTGTGGGGCCAAAATCAGGGATCAAATCTTCCTAGATTGTTTTGGGGGGCT TTCGAACCTAACACAATTATTCGTGAAGTGTCATGTGGAGCTGTCCATGTGGTTGCTTTATCTGAGGAAGGCCTACTACA AGCTTGGGGCTATAATGAGTATGGTCAACTTGGCCGAGGTGTTACTTGTGAAGGACTACAGAGGCCTCGTATTATAAATT CTTATGCTAAGTTCCTTGATGAAACCCCTGAGCTTGTGAAGATTACCACAGTGTCATGCGGGGAGTACCACACAGCAGCC ATTTCTGATAAGGGCGAGGTTTACACATGGGGGCTAGGAAATATGGGCCAGCTTGGGCATTCTTCACTTCAGTATGGGGA TAAAGAGTTAATACCAAGGAGGGTGGTTTCCCTCGATAGTATTTACATAAAAGACGTGGCGTGTGGTGGTGTACATACAT GTGCTTTAACTCAGGGAGGAGCTCTTTATGCTTGGGGTGGCGGTCAATCTGGACAGTTAGGCCTTGGTCCCAACACCGGA TTGTTCTCGTGTGTTGCTAATGACTCTCAGACGTTTTTCCGAAACATTCCGGTTTTAATTGTTCCGAAAGGCGTGCAACT CATTGCTTGCGGACATTCCCATACTCTTATTTCTATGAGTGATGGTCGAATTCATGGATGGGGTTACAATAATTATGGTC AGGCAGCCAATGAGAAATCTACATATGCTTGGTATCCATCACCAGTTGACTGGTGTGTTGGGGAGGTTAGAAAACTAGCT GCTGGTGGGGGCCATTCAGCTGTGTTGACTGATGCTTGTTCATTAAAGGAGTTGTGTGAGTTTGTACTTGCTGAGAGTAT GACTTTATCTAATGCTGCTAAAGTTGAGGATATTGCATACAGAACCGGCTCAGACGCCTTAGCTCGCCTTTGCGGAAGAC TCAGGTACTTCATGTGA
Protein sequence (LotjaGi1g1v0517600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDIDAIFGAIKPVNVPRKSAIYVWGYNQSGQTGRKEEDDQLRIPKQLPPQLFGCPAGTNVRWLDVACGREHTAAIASDGL LYTWGANDFGQLGDGTEERRKHPKKVKELESEFVKSVSCGAHCSACIADPRENDGTVSTGRLWVWGQNQGSNLPRLFWGA FEPNTIIREVSCGAVHVVALSEEGLLQAWGYNEYGQLGRGVTCEGLQRPRIINSYAKFLDETPELVKITTVSCGEYHTAA ISDKGEVYTWGLGNMGQLGHSSLQYGDKELIPRRVVSLDSIYIKDVACGGVHTCALTQGGALYAWGGGQSGQLGLGPNTG LFSCVANDSQTFFRNIPVLIVPKGVQLIACGHSHTLISMSDGRIHGWGYNNYGQAANEKSTYAWYPSPVDWCVGEVRKLA AGGGHSAVLTDACSLKELCEFVLAESMTLSNAAKVEDIAYRTGSDALARLCGRLRYFM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 428 | 428 | 7.0E-257 | – | |
| PANTHER | 1 | 428 | 428 | 7.0E-257 | – | |
| Gene3D | 13 | 156 | 144 | 4.1E-33 | ||
| SUPERFAMILY | 19 | 150 | 132 | 1.1E-28 | ||
| ProSiteProfiles | 19 | 78 | 60 | 13.037 | ||
| PRINTS | 20 | 36 | 17 | 7.4E-16 | ||
| Pfam | 21 | 75 | 55 | 6.5E-8 | ||
| ProSitePatterns | 65 | 75 | 11 | - | ||
| Pfam | 78 | 127 | 50 | 2.9E-15 | ||
| ProSiteProfiles | 79 | 130 | 52 | 14.926 | ||
| PRINTS | 81 | 97 | 17 | 7.4E-16 | ||
| SUPERFAMILY | 138 | 412 | 275 | 1.13E-60 | ||
| ProSiteProfiles | 140 | 183 | 44 | 8.856 | ||
| Gene3D | 163 | 442 | 280 | 1.1E-62 | ||
| PRINTS | 170 | 186 | 17 | 7.4E-16 | ||
| ProSiteProfiles | 184 | 244 | 61 | 14.001 | ||
| Pfam | 184 | 241 | 58 | 1.1E-9 | ||
| PRINTS | 186 | 200 | 15 | 7.4E-16 | ||
| ProSitePatterns | 231 | 241 | 11 | - | ||
| Pfam | 244 | 296 | 53 | 1.1E-12 | ||
| ProSiteProfiles | 245 | 299 | 55 | 17.157 | ||
| PRINTS | 289 | 307 | 19 | 7.4E-16 | ||
| ProSiteProfiles | 300 | 361 | 62 | 12.795 | ||
| Pfam | 300 | 356 | 57 | 9.9E-10 | ||
| PRINTS | 357 | 378 | 22 | 7.4E-16 | ||
| Pfam | 361 | 409 | 49 | 3.0E-5 | ||
| ProSiteProfiles | 362 | 412 | 51 | 11.67 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0517600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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