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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0520100 |
| Transcript ID | LotjaGi1g1v0520100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|A0A0B2SQZ5|A0A0B2SQZ5_GLYSO F-box/kelch-repeat protein; Found in the gene: LotjaGi1g1v0520100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:104405506..104408575) extracted from Lotus japonicus Gifu genome v1.2.
ACCTCAACCGCCGCAACCACCACCTCAACTGGAGCAACCGCCACCTCTTCTTCCTCATTTTCGAGGTGTCTTTCTTCTGC CACCACGCCATTGCCACCCGTAGGCGCAACCGCCGCAATCACCACCTCAACCGGCGCAACCGCCACCTCTTCTCCTCCAA TATCTTCTTCCTCATTTCAGCAGCAAAATCTTCTTCCGCCGCAACGCCATTGCCACTCCCATACTTCACCAACCTTCCAT TCAAGTCGTAACCGCTCACGGAGCCATTGTCGCTACCTCGTTTGCTCGCAGAACACCCTCTCTTTGCTACTGAAACATTG AACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCATGATGGACCCGTGCTTCAATGCTCTCCCTATCGATTTGATTC CACTGATTCTGGTGAGGTTACCTGTTCGATCTCTCCTCCGTTTCAAATGCGTCTGCAAATCGTGGCGGTCTCTGATTTCC GATCCCGAATTTGGTAAATCACATTTTGACCTAGCTGGTGCACCCACTCACCGTCTTCTTCTCAAAAGAATCAATGATGG TTCTGAAATTCAATCATTGGATTTACAAGCATCGCTTCACGACGATTCTGCTGTGGTAAACCTCAAATTCCCACCCTACA CTGCCCCCTTTTTTCAATCCCTGGGTTCTTGCAGAGGGTTTGTTCTGTTAACCAAGAGGTTGTGTCCAACAAATGATCTC ATCCTGTGGAATCCATCAACTGATGCTCACAGAGAAATTCCAGCGATCTTTCTTGGTGGTTTGTTTAATTCACTCTATGG TTTTGGGTATGACCAATCGAAGGATGATTATGTGCTTGTTCTAATCCGATTGGGTGTTCGATTGCTCGAAGAACGGTGTC AAATTGATGTTTTATCTCTGAAAACCAATGTACCCTCCTTTTATTACTATCGTGTTGTTCAATATCTGGAAGCTGGACAT GAGTCCCAATGTGGGGTTTTCTTGGATGAGTCTCTACATTGGCTGGTTAAATCCAAGGCTACACAGCATCATCTAGTCCT TGCCTTTGATTTGGTGAAAAGAAGCTTTTCGAAGATTCCTTTTTCACCTGATTTGGCAGCGGAATTGGCAACTCATGGCC GAGGTTGTTTGAGGGTATTGGGAGGGTGTCTTAGTGTGTGTTACTCGAGTGGAGGTGGTGGCCATGAAGTGGCTGAGATA TGGGTCATGAAAGATTCTTGGAGTAAATTGTTTGTTTTGACAATTCATGACCTTGTTGGCAGCAAGTTTTTTCCATTGTT TTCCACTGAAGGTGGTGGTGTTTTCGGATCTGATGAGAGTGGAACATTCAGGAAATTTAATGCTGAGGGTGAACTGACTG AACTGACTGAGAATTACACAGATGGACTGGATGACGACAAAGGTGCACTACAATTTCTCAACATGTATAGAGAAAGCCTA CTAACCCTCCCTGGTGACGTTGAGGAAGAAAATGTAGATGCCTGACAAGTAAGCATTTGTCTCCAACCCTTGTTACCTTT TTGTTTTAATTCATCTTTCATTATGTAATAGAGACTAACTATATCACTAGTATTCCCCCCTTGAACTGAGAGAAGTGATG GTTTCGAAACTGCTGAGTTTATATTTTAGTTCTAAGTATCTTTGTTTAGATGGAGCTTAGTGAGAATTTCATCAACTTGC TCATGAGTTTGAACATGAGAAACAGCAAGAGTCATATCTCTCAACTTGTTTCTTTTGTAGTCTATGTAATAATCAAACTT TATACAATTAGACTATCACAAGTTTCACGATCTTATGCAACTTTGTAGGTCAAATTAGTCTGCCATGCATTGCATCAATC AAGCAGAGTAGCAGGCAACTAAATGGACTCATCACCTGTTTGTATAAAGTATCATAGCAGTTACTAGCAGTGCTTTGATT ACCAACACAAACTAACATTGTCCTGCATTAGCTCAACATTTTATAAAACAAGGTCCAAAATAAACATAAACACTCAGAAA ATGCACGCATGACACTATTCTAAATAACTTTACCCATGGAATTAATATGCCTTATATTATGTGCCCACCCTTGACCCTAC TACTACTAGTAGTCATTATTTACACAGTTATTACTAATACATTTGATTTCTTTATATGGAGAATTTATTTTAGAGAAAAA GTGAGACATTATAGTCCATTGCCCGTTTGATGTGGCATGTGGGCTCAGAAGTCCTTGGGCTCACCTCTTTATCACTATCT AACTTTAAAGTGAGTTCTCCATAAATACTCTGTCACAGCAATTTGCTTGAGAAAATTTCAAGTACTCTTTTTCTTTCTTG GCCAAACTGGAAGGATTCTGTTAATAAATAATTATTCATGTTTCTTGCAAGCAATAAAATATGTTAGAATATTTTATACA CTCTCCTTGATGTTCTAGTTTTTCTTCAAAAGATGATACTGCTAGTGTTATTGAATGTCCTATATGGAAATCTATCACTT CTCTCTCTTCTATTCTCATCCCTCTCTAAGTATGGAAAGATGGAGGTGGAAATGGGTGTGAAGAAAACATTTTCCTGATT TCTATAAGATTGGAGTTTGAAAGGAATTTTAAAATTAACAATGCTTGGAAGTAGGATTTGTCAAATTTTAGTTGGAGTTA GTCCATGCTACATTGCTACTTAGTATCATCTTGTTCTTTCTTCTCGGTATTGTTATTGCCCTTGTTCCTGTTACCTCTTT TACATGGTTTTCAGTTAACTACTTAGGGTGTCTTCTTTGCAAAAACAATTCCTGATTTTTATAAGCTAATGTGCTGTTAG ATGTTTTGACTTTAAGTTGTGCAGATGTTGTTGATCTTAGCCATTTTGGAGGCTTGGAGCTTAAAGATGGTATGGAGTGA GAGGGAATCAAGTTGTAGTATGCATTGAGCTTGCTTGTAATTGGTTTAACCACTTCATCTCAATGATCTAGTGCTGATAA GATTTTCTGTTATAGTTTCATGATATCCCTAAAGATACTTTGTAGTTTGTAATAAGTAGGACCTATTGAATGAGTAATTA CATTAGTGCTGTCAGAATAATGGACCCTTT
CDS sequence (LotjaGi1g1v0520100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGACCCGTGCTTCAATGCTCTCCCTATCGATTTGATTCCACTGATTCTGGTGAGGTTACCTGTTCGATCTCTCCT CCGTTTCAAATGCGTCTGCAAATCGTGGCGGTCTCTGATTTCCGATCCCGAATTTGGTAAATCACATTTTGACCTAGCTG GTGCACCCACTCACCGTCTTCTTCTCAAAAGAATCAATGATGGTTCTGAAATTCAATCATTGGATTTACAAGCATCGCTT CACGACGATTCTGCTGTGGTAAACCTCAAATTCCCACCCTACACTGCCCCCTTTTTTCAATCCCTGGGTTCTTGCAGAGG GTTTGTTCTGTTAACCAAGAGGTTGTGTCCAACAAATGATCTCATCCTGTGGAATCCATCAACTGATGCTCACAGAGAAA TTCCAGCGATCTTTCTTGGTGGTTTGTTTAATTCACTCTATGGTTTTGGGTATGACCAATCGAAGGATGATTATGTGCTT GTTCTAATCCGATTGGGTGTTCGATTGCTCGAAGAACGGTGTCAAATTGATGTTTTATCTCTGAAAACCAATGTACCCTC CTTTTATTACTATCGTGTTGTTCAATATCTGGAAGCTGGACATGAGTCCCAATGTGGGGTTTTCTTGGATGAGTCTCTAC ATTGGCTGGTTAAATCCAAGGCTACACAGCATCATCTAGTCCTTGCCTTTGATTTGGTGAAAAGAAGCTTTTCGAAGATT CCTTTTTCACCTGATTTGGCAGCGGAATTGGCAACTCATGGCCGAGGTTGTTTGAGGGTATTGGGAGGGTGTCTTAGTGT GTGTTACTCGAGTGGAGGTGGTGGCCATGAAGTGGCTGAGATATGGGTCATGAAAGATTCTTGGAGTAAATTGTTTGTTT TGACAATTCATGACCTTGTTGGCAGCAAGTTTTTTCCATTGTTTTCCACTGAAGGTGGTGGTGTTTTCGGATCTGATGAG AGTGGAACATTCAGGAAATTTAATGCTGAGGGTGAACTGACTGAACTGACTGAGAATTACACAGATGGACTGGATGACGA CAAAGGTGCACTACAATTTCTCAACATGTATAGAGAAAGCCTACTAACCCTCCCTGGTGACGTTGAGGAAGAAAATGTAG ATGCCTGA
Protein sequence (LotjaGi1g1v0520100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMDPCFNALPIDLIPLILVRLPVRSLLRFKCVCKSWRSLISDPEFGKSHFDLAGAPTHRLLLKRINDGSEIQSLDLQASL HDDSAVVNLKFPPYTAPFFQSLGSCRGFVLLTKRLCPTNDLILWNPSTDAHREIPAIFLGGLFNSLYGFGYDQSKDDYVL VLIRLGVRLLEERCQIDVLSLKTNVPSFYYYRVVQYLEAGHESQCGVFLDESLHWLVKSKATQHHLVLAFDLVKRSFSKI PFSPDLAAELATHGRGCLRVLGGCLSVCYSSGGGGHEVAEIWVMKDSWSKLFVLTIHDLVGSKFFPLFSTEGGGVFGSDE SGTFRKFNAEGELTELTENYTDGLDDDKGALQFLNMYRESLLTLPGDVEEENVDA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 80 | 79 | 5.0E-9 | – | |
| ProSiteProfiles | 3 | 49 | 47 | 9.63 | ||
| Pfam | 5 | 46 | 42 | 5.8E-9 | ||
| SUPERFAMILY | 5 | 63 | 59 | 2.62E-15 | ||
| PANTHER | 9 | 344 | 336 | 4.4E-75 | – | |
| PANTHER | 9 | 344 | 336 | 4.4E-75 | – | |
| SMART | 9 | 49 | 41 | 7.4E-10 | ||
| TIGRFAM | 104 | 312 | 209 | 9.7E-21 | ||
| Pfam | 206 | 304 | 99 | 9.5E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0520100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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