Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0521800 |
| Transcript ID | LotjaGi1g1v0521800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G29290.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q84J46|PP262_ARATH Pentatricopeptide repeat-containing protein At3g29290; TrEMBL-Plants: tr|A0A151UAY9|A0A151UAY9_CAJCA Pentatricopeptide repeat-containing protein At3g29290; Found in the gene: LotjaGi1g1v0521800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:104612913..104616912) extracted from Lotus japonicus Gifu genome v1.2.
AAGCCCAAAACAACATCGTCTTCATCTGTGACTCTGTGAGGCCGATGCAGTAGCCATCCCCTGCACCAATTGAATCCTGA CCGTTCATCTAATATCGCACACATCCAACGGCTCACAAAAAGGGGATTCTGGGTTCTCATTCTCAACCCTCCAACTCCAA TTCTTCTTCTTCTCAGCTCTGCAACTCAGATATGGCTACTGGTTTCTCCTTTCTCCATTCCTAAAGTTTCCAACTTTACT TTCAATTTTTGCATTGTTACATATTGGGTCATGAATGCTCTGTTGTTTCATTCCTGAAGCTGTTTCAATTTCACATTTTT TTGGTTCAAAACAATAATATATATTGTTATTGACAATTTGACATGCCCTTTATGTTGAATTTTCCATTTCAGTTTCATAA ACCTGTTTCTTGTGTTTACAAGGTTGGTTACTTCCCCTTTGTTACTCATACAAGTGTTTGTGTAAGCACACATAGTAACT ATGTTAACATTGTTTTGTTTTCACAAACAAAGCATTCTGTGTCTTCAATTGGGGCAACAGGGTTTCATGAGTCCACACCA CTGTCTAAGGACATGGTTCCTAGTGTTGATTTTGGTATTTCTGAGCAAGAAGAATATGGTGATGATGATATTGAAGGAAG GGAAAAAGATGAAACATCTTTTGTTTCTTCTTGGAGGGAGTTGGAAGAAGAAGATGATGATGATGGAATAGAAGAATTTG ATACATCTTTTGTGTCTTCTCAGAGAGATGATGATGGTGAAAGAAGAGAAAAATTTAACACACCTTTTGTGTCCAAGATG AAATTACAATTGCCTCCCTGGGGAGAAGTGGAAGATGATGATGATGATATTGGAGGAAGAGGAGATAATGATGCATCTTT GGTGGCCAGGAAGGAATTGCCTCCCAGGGGAGAAGTGGTAGATTATGGACAGCAAGAGTCTAGACCTTTTGTTACTACTT TGTCGGCTTCTAAAGAGCATGGAGCTCAATTTTTGGAGGAAATGGATGAGAATGTGTTATCTAATAGGATTTTGGAGCTT AGCAGAATTAACAAGATTAGAAGTGCAATGGAATATTTTAGGTCTATGGAATTATTAGGTCTTTGTCCAAATATCCATGC TTGTAATTCTCTTATGTCTAGTCTTTTGAGAAATGGGTGGTGTGATGATTGCTTCAAAGTGTTCAATTTTGCAAAAACAA GAGGGATAGCTATAGGGCATACTTACAGCTTGATTCTCACAGCACGTGCAAAAGCTCAAGGTTGTGATTCGGCCCTTAAA TTCTTCAGGGAACTTGAAAGTGAATGTGATGTGGAGAAGGATTTTGATGCGATTGTTTACAACACCATGATATCTATTTG CAGAAACGCTGACAATTGGAGTGAAATTGTGATGTTATGGAAGAGTATGCAGGCAAATGGGTGTGCTGAAACGCTTGCTA CATATCGCTTATTAATAAGTACTTTTGTGCATTGTGACCAGAGTGAGCTTGCTCTCTATGCTTACCATGAGATGGTTCAA AACGGATTTGAACCAAATAGTAATATATTGAATGCTATCATTTGTGTATGTGCTAAAGAGGGAAAATGGGAGGCTGCGTT GAGCACCTTTAAAAAGATGTTGAAAGGTGAGCTTAAGCCAAACTTAGTTGCTTGCAATGCATTGATTAGCTCACTTGGAC GAGAAGGTGAACTCAAACTTGCATTTCAGGTCTATGATAAACTGAAATCATTGGGCCATAAACCAGATGCTTATACATTC AATGCTCTACTAAGTTCTCTTAACAGGGCCAATAGGCATCATGAAGCTCTTCAGCTTTTTGAGAGGATTGAAAGAAATCA AAACTTTCAATTCAATGTACATGTATATAATACTGCTTTAATGTCTTGCTCAAAGCTTGGTTTGTGGGATAAAGCTCTAG AGATTGTGTGGCAGATGGAATGTTCTGGAATGTCTGACATGACAGTATCTTATAGTCTTGTGATCAGGGCCTGTCAGCTT GCAAGGAAGCCAACAACTGCATTGCAAGTGTATGAGCATATGCTTCACCAGAAGTGCAGTCCAAGTATGTTTACTTATCT GTCCTTAATAAGATGCTGTATTTACGGAGAACTCTGGGAACAATTAGAAGAAATCCTAACGGTGGGTAACAAGCATTTTT TTTTTAATTTCTTAGCAGAATTTTTCTGAGTCTAATTTGTAAAAACTACATGTGTTATTTATTGCTACGCTGAAAACAGT TTTCAAGGATTAGACTTCTTTAAAGTGAGCAAGTAAAGGAATATCCAGCATTGTAAGGATGCACCATTTTACTGACAAAC TCACTTTAGAGGAGAATATTTGAACCTCTATTAGTGTATAGATGTGTTTATACTAACACTACTTTCATCAACTATATCAT CAAAATAATTTCTAAACTGAAATATATGCCTTTAATTTATGAATTTTTGTATTGAAATAATTTACTTAGATTTCAAAGTA TCTATATTTGAATATATTGGTACGTGTGTTTCTGAGGAGTCCATTTGTACAGCAAGTGAGTCCTTGACAGTTAGTTGCTG ATGCATTGTTCAAGTTGTTCTAAATGGTTATTAGTGTTGTTGGGTAGAGGTAATTCAGTTGTATTAAATTGTGATTGATG AAGAAAAGTGTGTTTTTCTCTCTAGTGTTATTTTCCATTCTGTGCCCGGTTGCTCCCAAATTGAGAGCTTTTAATCCCAG TTATAACAGATATCAATTGTGAAAAAGGTTATCATTAAGTACCAGCTTCAATTGCTGTTTTACTATTGTAAATATGTTCT ATACATTGATTATATATCATTTATCAAGTATCATCTCAATTACAGGATAAAATAAAAATTGTTGTAGCATCTTTTCTCCT GTGATTGAGTCTAGTCAATATACTGGAGTTAAATGTGAAAGAACTTGGTTGACGCTTATAGATCACCTTAATTTGGGATC GGTTCCAAATAGGTGCTTCTACTTGTGCTATTAAAAGAACATGTAGTTTTAAGCATTAATAAAAAATCCCCCTAGAGACA GTGATATTGGTTTTAACACCAAACAGTAAAATTTAGTACTTCATTGCCTTGATATGATAAGTAGAAGCCACCCACCACAA ACAATCCCAAACCATGTTGAGTATTATGTGTACATGGATGCCATAGATCTAGTTTGTGTTATCCATGCAAAGAACTATAG TTTTAGTTAATTGTGTAATAACTGGTCTACCTCATTTTCTAGTGGTCTGTTCTGTCATAAATATTTGATATCTGCTCCTT TTGCAGCACACTACGCCAAACGCCACTCTTTATAATGCTGCTGTTCAAGGGATGTGCTTACGTGGCAAGATTAACTTTGC AAATAAGGTCTACGAAAAAATGCTGGAGAGTGGTCTTCAACCGGATGCCAAAACACGAGTGCTAATCCATCCTATGATAA GGAAGTAGCTAGTAGTCTATCAGTTGCTGTAAATAACATAACAGAGTTTTGATACGATGGCCAAAAGCGGGATAATATCA TAGGAAGCTGAATCAGGGCCAGGCAAACATGAAATAATTCATTTTAGTTAGGGTATCGGGAAAGAGAATATCAGACTAAA ATGTTACTGTAAGTTTGTAAGAATTGTATAGTTACCATCTCTGCATTCTTTTTACTCTTTCTATGGTTCTGAGTAAAGAA GCTTCTTGATTAATATGCATGTAAAAGTCTTGTAATTTTATTTTTTGTGGTATATTCAAGAGTTCACCCCATCTACTGGA CTTGGCTGATGTCTCTTTCTAGTTTTTACAGCAATTCTTATTTTTAATTACAAGAACAGTATATCCACTCCTCATAGATT ATTTTCTTCTTGACACATCTCTTCTTCTCTCACTCTTATTGTGGGCTTATACATCTTAATTGGATGCCTACCAAACATTT TCCTTTCTACATATCATGTTTTGGTGCTCTTGGCTCTTAACAACTTTTCTCTTAAACACATTCTTCTTGAAGCATTTCAT
CDS sequence (LotjaGi1g1v0521800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCCTTTATGTTGAATTTTCCATTTCAGTTTCATAAACCTGTTTCTTGTGTTTACAAGGTTGGTTACTTCCCCTTTGT TACTCATACAAGTGTTTGTGTAAGCACACATAGTAACTATGTTAACATTGTTTTGTTTTCACAAACAAAGCATTCTGTGT CTTCAATTGGGGCAACAGGGTTTCATGAGTCCACACCACTGTCTAAGGACATGGTTCCTAGTGTTGATTTTGGTATTTCT GAGCAAGAAGAATATGGTGATGATGATATTGAAGGAAGGGAAAAAGATGAAACATCTTTTGTTTCTTCTTGGAGGGAGTT GGAAGAAGAAGATGATGATGATGGAATAGAAGAATTTGATACATCTTTTGTGTCTTCTCAGAGAGATGATGATGGTGAAA GAAGAGAAAAATTTAACACACCTTTTGTGTCCAAGATGAAATTACAATTGCCTCCCTGGGGAGAAGTGGAAGATGATGAT GATGATATTGGAGGAAGAGGAGATAATGATGCATCTTTGGTGGCCAGGAAGGAATTGCCTCCCAGGGGAGAAGTGGTAGA TTATGGACAGCAAGAGTCTAGACCTTTTGTTACTACTTTGTCGGCTTCTAAAGAGCATGGAGCTCAATTTTTGGAGGAAA TGGATGAGAATGTGTTATCTAATAGGATTTTGGAGCTTAGCAGAATTAACAAGATTAGAAGTGCAATGGAATATTTTAGG TCTATGGAATTATTAGGTCTTTGTCCAAATATCCATGCTTGTAATTCTCTTATGTCTAGTCTTTTGAGAAATGGGTGGTG TGATGATTGCTTCAAAGTGTTCAATTTTGCAAAAACAAGAGGGATAGCTATAGGGCATACTTACAGCTTGATTCTCACAG CACGTGCAAAAGCTCAAGGTTGTGATTCGGCCCTTAAATTCTTCAGGGAACTTGAAAGTGAATGTGATGTGGAGAAGGAT TTTGATGCGATTGTTTACAACACCATGATATCTATTTGCAGAAACGCTGACAATTGGAGTGAAATTGTGATGTTATGGAA GAGTATGCAGGCAAATGGGTGTGCTGAAACGCTTGCTACATATCGCTTATTAATAAGTACTTTTGTGCATTGTGACCAGA GTGAGCTTGCTCTCTATGCTTACCATGAGATGGTTCAAAACGGATTTGAACCAAATAGTAATATATTGAATGCTATCATT TGTGTATGTGCTAAAGAGGGAAAATGGGAGGCTGCGTTGAGCACCTTTAAAAAGATGTTGAAAGGTGAGCTTAAGCCAAA CTTAGTTGCTTGCAATGCATTGATTAGCTCACTTGGACGAGAAGGTGAACTCAAACTTGCATTTCAGGTCTATGATAAAC TGAAATCATTGGGCCATAAACCAGATGCTTATACATTCAATGCTCTACTAAGTTCTCTTAACAGGGCCAATAGGCATCAT GAAGCTCTTCAGCTTTTTGAGAGGATTGAAAGAAATCAAAACTTTCAATTCAATGTACATGTATATAATACTGCTTTAAT GTCTTGCTCAAAGCTTGGTTTGTGGGATAAAGCTCTAGAGATTGTGTGGCAGATGGAATGTTCTGGAATGTCTGACATGA CAGTATCTTATAGTCTTGTGATCAGGGCCTGTCAGCTTGCAAGGAAGCCAACAACTGCATTGCAAGTGTATGAGCATATG CTTCACCAGAAGTGCAGTCCAAGTATGTTTACTTATCTGTCCTTAATAAGATGCTGTATTTACGGAGAACTCTGGGAACA ATTAGAAGAAATCCTAACGCACACTACGCCAAACGCCACTCTTTATAATGCTGCTGTTCAAGGGATGTGCTTACGTGGCA AGATTAACTTTGCAAATAAGGTCTACGAAAAAATGCTGGAGAGTGGTCTTCAACCGGATGCCAAAACACGAGTGCTAATC CATCCTATGATAAGGAAGTAG
Protein sequence (LotjaGi1g1v0521800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPFMLNFPFQFHKPVSCVYKVGYFPFVTHTSVCVSTHSNYVNIVLFSQTKHSVSSIGATGFHESTPLSKDMVPSVDFGIS EQEEYGDDDIEGREKDETSFVSSWRELEEEDDDDGIEEFDTSFVSSQRDDDGERREKFNTPFVSKMKLQLPPWGEVEDDD DDIGGRGDNDASLVARKELPPRGEVVDYGQQESRPFVTTLSASKEHGAQFLEEMDENVLSNRILELSRINKIRSAMEYFR SMELLGLCPNIHACNSLMSSLLRNGWCDDCFKVFNFAKTRGIAIGHTYSLILTARAKAQGCDSALKFFRELESECDVEKD FDAIVYNTMISICRNADNWSEIVMLWKSMQANGCAETLATYRLLISTFVHCDQSELALYAYHEMVQNGFEPNSNILNAII CVCAKEGKWEAALSTFKKMLKGELKPNLVACNALISSLGREGELKLAFQVYDKLKSLGHKPDAYTFNALLSSLNRANRHH EALQLFERIERNQNFQFNVHVYNTALMSCSKLGLWDKALEIVWQMECSGMSDMTVSYSLVIRACQLARKPTTALQVYEHM LHQKCSPSMFTYLSLIRCCIYGELWEQLEEILTHTTPNATLYNAAVQGMCLRGKINFANKVYEKMLESGLQPDAKTRVLI HPMIRK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 83 | 136 | 54 | - | – | |
| Gene3D | 196 | 318 | 123 | 1.3E-12 | ||
| ProSiteProfiles | 215 | 249 | 35 | 7.092 | ||
| PANTHER | 226 | 400 | 175 | 2.2E-89 | – | |
| ProSiteProfiles | 250 | 284 | 35 | 8.561 | ||
| TIGRFAM | 253 | 282 | 30 | 0.0027 | ||
| Pfam | 254 | 282 | 29 | 0.0036 | ||
| PANTHER | 287 | 453 | 167 | 2.2E-89 | – | |
| Gene3D | 319 | 457 | 139 | 5.4E-32 | ||
| ProSiteProfiles | 322 | 356 | 35 | 9.46 | ||
| TIGRFAM | 324 | 354 | 31 | 1.3E-5 | ||
| Pfam | 325 | 354 | 30 | 4.2E-4 | ||
| ProSiteProfiles | 357 | 391 | 35 | 9.569 | ||
| TIGRFAM | 360 | 393 | 34 | 1.8E-5 | ||
| Pfam | 360 | 389 | 30 | 0.31 | ||
| SUPERFAMILY | 368 | 522 | 155 | 8.37E-6 | – | |
| ProSiteProfiles | 392 | 426 | 35 | 10.49 | ||
| TIGRFAM | 396 | 427 | 32 | 1.8E-6 | ||
| Pfam | 397 | 421 | 25 | 3.3E-4 | ||
| PANTHER | 424 | 578 | 155 | 2.2E-89 | – | |
| Pfam | 426 | 473 | 48 | 5.8E-12 | ||
| ProSiteProfiles | 427 | 461 | 35 | 11.224 | ||
| TIGRFAM | 429 | 463 | 35 | 1.4E-7 | ||
| ProSiteProfiles | 462 | 492 | 31 | 9.821 | ||
| TIGRFAM | 464 | 492 | 29 | 9.0E-5 | ||
| Gene3D | 469 | 592 | 124 | 1.6E-25 | ||
| ProSiteProfiles | 498 | 532 | 35 | 9.668 | ||
| Pfam | 501 | 529 | 29 | 5.5E-4 | ||
| ProSiteProfiles | 533 | 567 | 35 | 8.791 | ||
| TIGRFAM | 535 | 568 | 34 | 6.4E-5 | ||
| PANTHER | 535 | 635 | 101 | 2.2E-89 | – | |
| Pfam | 535 | 579 | 45 | 1.4E-4 | ||
| Gene3D | 593 | 641 | 49 | 3.6E-6 | ||
| ProSiteProfiles | 598 | 632 | 35 | 11.005 | ||
| TIGRFAM | 601 | 634 | 34 | 3.7E-5 | ||
| Pfam | 601 | 630 | 30 | 0.019 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0521800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…