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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0522400 |
| Transcript ID | LotjaGi1g1v0522400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G02330.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330; TrEMBL-Plants: tr|I1KWM5|I1KWM5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0522400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:104668481..104671048) extracted from Lotus japonicus Gifu genome v1.2.
ATGAACCCCACCAAAAAGTTCAACTTTTCCCAAATTTTCCAAAAATGTTCCAACCTTAAGGCTTTGAATCCTGGCCAACA AGCCCATGCCCAGATGATAGTAACTGGTTTTGTGCCCACTATCTATGTTACCAACTGTTTACTTCAATTCTATTGTAAAT GTTCTAATGTGAATTATGCATCCATGGTGTTTGACAGAATGCCCCACAGGGATATAGTCTCGAGGAACACTATGATTTCC GGGTATGCTGGGATCGGAAACATGGGATCGGCGCAGTCTTTGTTTGACTCGATGCCTGAGGTTGAGAGAGATGTGGTTTC CTGGAATTCTTTGCTCTCTTGCTATTTACACAACGGCGTTGATAGGAAGACAATTGAAATTTTTATCGAGATGAGATCGC TGAAAATCCCACATGACTATGCTACATTTGCCGTTGTTCTGAAAGCTTGTTCTGGTGTTGAAGACCATGGTTTAGGGCTC CAGGTGCACTGTCTTGCTATTCAGATGGGTTTTGAGGGTGATGTGGTGACGGGTAGTGCTCTAGTAGATATGTATTCGAA GTGTAAGAAACTTGACCATGCTTATCAGGTTTTCTGTGAAATGCCGGAAAGAAATTTGGTATGTTGGAGTGCTGTAATTG CAGGCTATGTTCAGAATGATAAGTTTATTGAAGGACTAAAACTGTATAATGATATGCTGAAAGCAGGCTTGGGGGTGAGT CAATCAACCTATGCTAGTGCATTTAGGTCTTGTGCAGGATTATCTGCATTTAAATTGGGCACGCAGTTGCACGGTCACGC TCTAAAGTCTGCTTTTGGATATGATAGTATAGTGGGAACTGCTACATTAGACATGTACGCAAAATGTGACAGAATGGCTG ATGCTCGAAAGATATTTGACGCACTACCCTATCCTACTCGGCAATCTTATAATGCTATTATTGGGGGATATGCTAGGCAA CATCAAGGTCTTGAAGCTTTAGAAATTTTTCAATCTTTACAGAAGTCTCGTCACAACTTTGATGACATCAGTTTGTCTGG TGCTCTGACTGCTTGTTCAGCAATCAAAGGCCTTTTGCAGGGGATTCAACTACATGGATTAGCAGTCAAATGTGGATTAG AGTTTAATATCTGTGTTGCAAATGCTATTTTAGACATGTATGGAAAATGTGGAAAATTGATGGAAGCTCGGGTAATATTT GATGACATGGAAAGAAAGGATGCTGTCTCTTGGAATGCAATCATTGCAGCTCATGAGCAAAATGAAGCAGTTGTAAAAAC ACTTTCACTTTTTGTTTCAATGCTGCGGTCAACGATGGAACCTGATGATTTTACTTACGGTAGTGTTGTAAAGGCATGTG CTGGTCAGAAAGCTTTAAACTATGGTATGGAGATCCATGGAAGAATCATTAAGTCGGGAATGGGGTTGGACTGGTTCGTC GGCAGTGCCCTTGTTGATATGTACGGCAAGTGCGGAATGCTAGTGGAGGCAGAAAAGATTCATGACAGGATAGAAGAGAA AACTATTGTTTCTTGGAATTCAATCATTTCAGGATTCTCATTGCAGAGGCAAGGTGAAAATGCTCTAAGGCACTTTTCTC GGATGCTGGAAGTGGGTGTAATGCCTGACAACTTCACATATGCTACAGTTCTTGATATTTGTGCTAATTTGGCTACAATT GAACTTGGAAAGCAAATTCATGCACTAATCTTAAAGCTACAGTTGCAATCAGATGTTTATATAGCCAGCACTCTTGTAGA TATGTATTCGAAGTGTGGAAATATGCAGGATTCCCAGCTAATGTTTGAGAAGGCTCCTAAGCGTGATTATGTGACTTGGA GCGCCATGATTTGTGCATATGCATACCATGGTCTTGGAGAAGACGCCATTAAATTATTTGAAGAGATGCAGCTTCAGAAT GTGAAACCAAACCATACAATTTTTATCTCAGTCCTCAGAGCTTGTGCGCATATGGGTTATGTGGACAGAGGGCTGTGTTA CTTTGAGGAAATGCAAAGTCACTATGGTTTAGATCCCCAAATGGAACATTATTCATGTATGGTAGATCTACTAGGGAGGT CAGGCCAAGTAAATGAAGCTTTGAGGCTTATTGAAAGCATGCCTTTTGAAGCCGATGAAGTAATTTGGAGAACTTTGCTC AGTAATTGCAAGATGAATGGGAATGTAGAAGTAGCAGAAAAAGCAGCCAATTCTTTATTGCAGTTGGACCCTCAAGATTC TTCTGCTTATGTTCTTCTGTCAAATGTATATGCTAATGCAGGGATTTGGGATGAGGTTGCAAAAATAAGAAGTATAATGA AGGACTGTAAGTTAAAGAAGGAGCCAGGTTGTAGCTGGATTGAGGTAAGAGATGAGGTACATGCATTTCTTGTTGGAGAC AAGGCACATCCTAGATGTGAAGAAATATATGAGCAAACTCATTTACTTGTGGATGAAATGAAGTGGGATGGAAATGTTGC GGATATTGATTTCATGCTTGATGAGGAAGTGGAAGAACAATATCCACATGAGGGGCTCAAAACCATCAGCATATGCAGTG TGAGATAA
CDS sequence (LotjaGi1g1v0522400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACCCCACCAAAAAGTTCAACTTTTCCCAAATTTTCCAAAAATGTTCCAACCTTAAGGCTTTGAATCCTGGCCAACA AGCCCATGCCCAGATGATAGTAACTGGTTTTGTGCCCACTATCTATGTTACCAACTGTTTACTTCAATTCTATTGTAAAT GTTCTAATGTGAATTATGCATCCATGGTGTTTGACAGAATGCCCCACAGGGATATAGTCTCGAGGAACACTATGATTTCC GGGTATGCTGGGATCGGAAACATGGGATCGGCGCAGTCTTTGTTTGACTCGATGCCTGAGGTTGAGAGAGATGTGGTTTC CTGGAATTCTTTGCTCTCTTGCTATTTACACAACGGCGTTGATAGGAAGACAATTGAAATTTTTATCGAGATGAGATCGC TGAAAATCCCACATGACTATGCTACATTTGCCGTTGTTCTGAAAGCTTGTTCTGGTGTTGAAGACCATGGTTTAGGGCTC CAGGTGCACTGTCTTGCTATTCAGATGGGTTTTGAGGGTGATGTGGTGACGGGTAGTGCTCTAGTAGATATGTATTCGAA GTGTAAGAAACTTGACCATGCTTATCAGGTTTTCTGTGAAATGCCGGAAAGAAATTTGGTATGTTGGAGTGCTGTAATTG CAGGCTATGTTCAGAATGATAAGTTTATTGAAGGACTAAAACTGTATAATGATATGCTGAAAGCAGGCTTGGGGGTGAGT CAATCAACCTATGCTAGTGCATTTAGGTCTTGTGCAGGATTATCTGCATTTAAATTGGGCACGCAGTTGCACGGTCACGC TCTAAAGTCTGCTTTTGGATATGATAGTATAGTGGGAACTGCTACATTAGACATGTACGCAAAATGTGACAGAATGGCTG ATGCTCGAAAGATATTTGACGCACTACCCTATCCTACTCGGCAATCTTATAATGCTATTATTGGGGGATATGCTAGGCAA CATCAAGGTCTTGAAGCTTTAGAAATTTTTCAATCTTTACAGAAGTCTCGTCACAACTTTGATGACATCAGTTTGTCTGG TGCTCTGACTGCTTGTTCAGCAATCAAAGGCCTTTTGCAGGGGATTCAACTACATGGATTAGCAGTCAAATGTGGATTAG AGTTTAATATCTGTGTTGCAAATGCTATTTTAGACATGTATGGAAAATGTGGAAAATTGATGGAAGCTCGGGTAATATTT GATGACATGGAAAGAAAGGATGCTGTCTCTTGGAATGCAATCATTGCAGCTCATGAGCAAAATGAAGCAGTTGTAAAAAC ACTTTCACTTTTTGTTTCAATGCTGCGGTCAACGATGGAACCTGATGATTTTACTTACGGTAGTGTTGTAAAGGCATGTG CTGGTCAGAAAGCTTTAAACTATGGTATGGAGATCCATGGAAGAATCATTAAGTCGGGAATGGGGTTGGACTGGTTCGTC GGCAGTGCCCTTGTTGATATGTACGGCAAGTGCGGAATGCTAGTGGAGGCAGAAAAGATTCATGACAGGATAGAAGAGAA AACTATTGTTTCTTGGAATTCAATCATTTCAGGATTCTCATTGCAGAGGCAAGGTGAAAATGCTCTAAGGCACTTTTCTC GGATGCTGGAAGTGGGTGTAATGCCTGACAACTTCACATATGCTACAGTTCTTGATATTTGTGCTAATTTGGCTACAATT GAACTTGGAAAGCAAATTCATGCACTAATCTTAAAGCTACAGTTGCAATCAGATGTTTATATAGCCAGCACTCTTGTAGA TATGTATTCGAAGTGTGGAAATATGCAGGATTCCCAGCTAATGTTTGAGAAGGCTCCTAAGCGTGATTATGTGACTTGGA GCGCCATGATTTGTGCATATGCATACCATGGTCTTGGAGAAGACGCCATTAAATTATTTGAAGAGATGCAGCTTCAGAAT GTGAAACCAAACCATACAATTTTTATCTCAGTCCTCAGAGCTTGTGCGCATATGGGTTATGTGGACAGAGGGCTGTGTTA CTTTGAGGAAATGCAAAGTCACTATGGTTTAGATCCCCAAATGGAACATTATTCATGTATGGTAGATCTACTAGGGAGGT CAGGCCAAGTAAATGAAGCTTTGAGGCTTATTGAAAGCATGCCTTTTGAAGCCGATGAAGTAATTTGGAGAACTTTGCTC AGTAATTGCAAGATGAATGGGAATGTAGAAGTAGCAGAAAAAGCAGCCAATTCTTTATTGCAGTTGGACCCTCAAGATTC TTCTGCTTATGTTCTTCTGTCAAATGTATATGCTAATGCAGGGATTTGGGATGAGGTTGCAAAAATAAGAAGTATAATGA AGGACTGTAAGTTAAAGAAGGAGCCAGGTTGTAGCTGGATTGAGGTAAGAGATGAGGTACATGCATTTCTTGTTGGAGAC AAGGCACATCCTAGATGTGAAGAAATATATGAGCAAACTCATTTACTTGTGGATGAAATGAAGTGGGATGGAAATGTTGC GGATATTGATTTCATGCTTGATGAGGAAGTGGAAGAACAATATCCACATGAGGGGCTCAAAACCATCAGCATATGCAGTG TGAGATAA
Protein sequence (LotjaGi1g1v0522400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNPTKKFNFSQIFQKCSNLKALNPGQQAHAQMIVTGFVPTIYVTNCLLQFYCKCSNVNYASMVFDRMPHRDIVSRNTMIS GYAGIGNMGSAQSLFDSMPEVERDVVSWNSLLSCYLHNGVDRKTIEIFIEMRSLKIPHDYATFAVVLKACSGVEDHGLGL QVHCLAIQMGFEGDVVTGSALVDMYSKCKKLDHAYQVFCEMPERNLVCWSAVIAGYVQNDKFIEGLKLYNDMLKAGLGVS QSTYASAFRSCAGLSAFKLGTQLHGHALKSAFGYDSIVGTATLDMYAKCDRMADARKIFDALPYPTRQSYNAIIGGYARQ HQGLEALEIFQSLQKSRHNFDDISLSGALTACSAIKGLLQGIQLHGLAVKCGLEFNICVANAILDMYGKCGKLMEARVIF DDMERKDAVSWNAIIAAHEQNEAVVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQKALNYGMEIHGRIIKSGMGLDWFV GSALVDMYGKCGMLVEAEKIHDRIEEKTIVSWNSIISGFSLQRQGENALRHFSRMLEVGVMPDNFTYATVLDICANLATI ELGKQIHALILKLQLQSDVYIASTLVDMYSKCGNMQDSQLMFEKAPKRDYVTWSAMICAYAYHGLGEDAIKLFEEMQLQN VKPNHTIFISVLRACAHMGYVDRGLCYFEEMQSHYGLDPQMEHYSCMVDLLGRSGQVNEALRLIESMPFEADEVIWRTLL SNCKMNGNVEVAEKAANSLLQLDPQDSSAYVLLSNVYANAGIWDEVAKIRSIMKDCKLKKEPGCSWIEVRDEVHAFLVGD KAHPRCEEIYEQTHLLVDEMKWDGNVADIDFMLDEEVEEQYPHEGLKTISICSVR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 116 | 115 | 2.6E-19 | ||
| ProSiteProfiles | 5 | 39 | 35 | 5.382 | ||
| PANTHER | 9 | 131 | 123 | 5.3E-156 | – | |
| ProSiteProfiles | 40 | 70 | 31 | 7.004 | ||
| Pfam | 45 | 71 | 27 | 0.22 | ||
| ProSiteProfiles | 71 | 101 | 31 | 8.199 | ||
| Pfam | 73 | 100 | 28 | 0.0024 | ||
| ProSiteProfiles | 104 | 138 | 35 | 9.251 | ||
| Pfam | 104 | 150 | 47 | 2.4E-7 | ||
| PANTHER | 105 | 152 | 48 | 5.3E-156 | – | |
| TIGRFAM | 106 | 137 | 32 | 0.0029 | ||
| Gene3D | 121 | 259 | 139 | 7.9E-26 | ||
| ProSiteProfiles | 139 | 173 | 35 | 5.579 | ||
| PANTHER | 142 | 252 | 111 | 5.3E-156 | – | |
| ProSiteProfiles | 174 | 208 | 35 | 9.876 | ||
| TIGRFAM | 180 | 207 | 28 | 0.0012 | ||
| Pfam | 205 | 252 | 48 | 2.8E-7 | ||
| TIGRFAM | 207 | 237 | 31 | 4.1E-5 | ||
| ProSiteProfiles | 209 | 239 | 31 | 6.73 | ||
| PANTHER | 243 | 362 | 120 | 5.3E-156 | – | |
| ProSiteProfiles | 275 | 305 | 31 | 5.261 | ||
| ProSiteProfiles | 306 | 340 | 35 | 8.331 | ||
| Pfam | 309 | 336 | 28 | 0.0026 | ||
| TIGRFAM | 309 | 339 | 31 | 7.2E-4 | ||
| Gene3D | 321 | 456 | 136 | 3.0E-25 | ||
| PANTHER | 361 | 466 | 106 | 5.3E-156 | – | |
| ProSiteProfiles | 376 | 410 | 35 | 8.999 | ||
| TIGRFAM | 381 | 406 | 26 | 0.0032 | ||
| Pfam | 406 | 454 | 49 | 6.4E-9 | ||
| ProSiteProfiles | 411 | 441 | 31 | 5.152 | ||
| ProSiteProfiles | 442 | 476 | 35 | 7.618 | ||
| Gene3D | 457 | 563 | 107 | 3.7E-19 | ||
| PANTHER | 461 | 566 | 106 | 5.3E-156 | – | |
| ProSiteProfiles | 477 | 507 | 31 | 7.377 | ||
| Pfam | 482 | 507 | 26 | 0.019 | ||
| Pfam | 508 | 555 | 48 | 1.4E-9 | ||
| ProSiteProfiles | 508 | 542 | 35 | 10.172 | ||
| ProSiteProfiles | 543 | 577 | 35 | 6.084 | ||
| PANTHER | 561 | 782 | 222 | 5.3E-156 | – | |
| Gene3D | 564 | 658 | 95 | 1.5E-19 | ||
| ProSiteProfiles | 578 | 608 | 31 | 7.103 | ||
| SUPERFAMILY | 588 | 763 | 176 | 1.25E-6 | ||
| ProSiteProfiles | 609 | 643 | 35 | 11.707 | ||
| Pfam | 609 | 656 | 48 | 9.7E-9 | ||
| TIGRFAM | 611 | 644 | 34 | 1.4E-7 | ||
| ProSiteProfiles | 644 | 674 | 31 | 7.377 | ||
| Gene3D | 661 | 802 | 142 | 9.9E-16 | ||
| ProSiteProfiles | 680 | 714 | 35 | 7.695 | ||
| Pfam | 683 | 707 | 25 | 0.0069 | ||
| TIGRFAM | 684 | 707 | 24 | 0.0031 | ||
| ProSiteProfiles | 746 | 780 | 35 | 7.432 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0522400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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