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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0524200 |
| Transcript ID | LotjaGi1g1v0524200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cell division cycle protein 27 like B; TAIR: AT2G20000.1 CDC27 family protein; Swiss-Prot: sp|Q8LGU6|CD27B_ARATH Cell division cycle protein 27 homolog B; TrEMBL-Plants: tr|A0A151UB02|A0A151UB02_CAJCA Cell division cycle protein 27 isogeny; Found in the gene: LotjaGi1g1v0524200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:104924927..104931938) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATCTTCTTAGTGAAGCTGAAGCAGCATTATGTCCTGTCAATGAGCCTAGTGCAGAGGTACAAAGCATAATTGGGAA TGTAATTTATAAAATTTATAAGTCTCCACTCCAGACGGCCTTAGCACAGTTTGTCTCATAAACTGATTGGCTTCTGCTGT ACTCTTAGTCAAATTAGCTATTGTTAAATTCACTTTTCATTTATGACGTTGGTTCTACCTGCTGCTTTGCTTGAAGTCGT CTTTTTTATATTTTCTGAGTGCATTTACCACAAGTAGTTGAATAACTACTTTTTTTTGTTGCTTTTCTTAATATGCAGGT CCCAAATGGTGCAGCTGGTCATCATCTATTAGGGCTCATTTACAGGTTGCTTATCGCTATCAGTCTTACCCTCAATTGTC AATCAGTATTTCTTAAATCTGCTTTTAATATCGTGTGAAAGGAAATGATCTGATCCTTGCAAAATCAGATTATATGCCCA CATACCATTTAAGATTAAAGCAGACATTATTTAAAATGTATGCTCCCATTCTTACCTTTTTGTGGCATATACAAAAATTT CAAGTCTCAAGAAGCTAGAAGGAATGTTAGTTATATATGATGATCCAGAGAAACATAAACTAGTAGTATTAATGTGTTCT AACAAGAAAATAGTTATAATGAAACAATTATGTTTTTAACCAAAGTTCCACGAATACTTAGCTATCCATTCATAAGCCAT GCTTTGATGACACTTTTTAAGTAGGTTTTGATTTAAACCTTTGAAACTTTAATTTTGCAACCAGTTGCATTACCATCTAT TTTAGCTAAGCTAATATGTCTGTTGTATTGCTAATATTCAAGTTTTTTTCATTTTTCTATGACAAAGTTGATTGTTAATA ATCTAACTTTTCTCTACGAGATATACAATTGAGCAACTTTCATTGGAGGACTTTCCAACAAAGTCCAACATTTGATTGAA TATTCTCATCGTGTAGATCACACCCAAAGAACGTTTCATAAATCAGAAATAGTTTTGTACTCTATTCATATATATATATT TAGATTAATGTAATATATCGTACATGTATTAAAAAATACGAAAAATATTAACTATTTAACTACATTACTATTGGTGTTAA AGTTTTTTAAAGTTTGGCATGAAAGATCAACATGGTAGATATGCATGTATATATGTGCGTACACAGGCGTGCGTGCTTAT GAATATTTTCAAAGTGTACATTGATTGACTTTTACTCAAAATCCACTACTGGATTGAATTTAAGCTCACAAAATTTGATG AATTCATCTTCTGTTATATTCTCTTTTTCAGATATACTGACAGAAGGAGAAGTGCCATACATCATTTTAAGCAGGCACTA TTGGTGGATCCTCTAATGTGGGCAGCATATGAGGAGTTGTGCATATTAGGTCTGTAAGATGATATTACCTGATTCTTGAT GCTCATTGGGCATATTTGATGAATTGATTGGAGAAACCTAGTTTTGAGATTTAGGGACTGTTTTTTATGTCGTAAAGTAA CGTGTTTCATATTTCAATGTTATTTTCATCGACATCACTGTTTAATTTTCTGAATATTTAGGCGCTGCTGAAGAAGCTAC TGCAGTTTTTGGTGAAGCAGCTGCTCTTTGTATACAAAAGCAATACCTAAATTGCTCAACTACTCCAAAGCTGCATTCAT CTACTGAGGATTGTAATTTGGTTGACACTAGACACAGTGCATCAGAAGATGTGAATCCAAGGCAACTGAAACTCATGCAA GGCCTAAAGGATATTCCTCTAAATCATCATGGAGCATCTATATTAGGAGGAACTTCTGGTCAACCTATTAATAGTGGTCC GTCTAACATTTCATTTTATAACACCCCATCTCCAATGGTAACGCAGGTAATTGCATCAAGCTTCATATTCTGTGTGTATA TATTAATGTTTATAAAAAAATTAAGGATAAGTTAAACTACTTATGAAGTCATAGTCACTAAATTCAGAAATATTTGTAAA ACATGTCCTAGAATTCCATAGTATTAATGTAGGCTTCTTGGTCTATTAGGCATTTGCTTGATGCCCATTTTTCTTCTCAA ATGGTTGATATTATTTTCTTCACCTCTTTTCCAGTTGTCAGGTGTTGCTCCGCCCCCTTTGTGTAGGAATGTGCAGCTAA ATGGCTCAAATCTGAGCACTGTTGGTGCAGAGAGTTCTCCTAAATCAACAGTAAACTCTACTATTCAAGCCCCCCGAAGA AAGTTTGTTGATGAAGGAAAGTTACGAAAGGTTGGGTTATAGCTGTAATAAGTCTCCTGTTTTCTATTTCCTTTACATCA TAAAATTGACTCACCACCCTCTCTTGCATTTTCTGTCTGTAGACACTGATCTGAAAATTATCTTTTTAAAATGCTCAAAG GCTTCATAAAATATAATAGTATAATACCTCAACTAGTTGGACAAGACTTGGTTGGTTTATAGACTGATTTGATAAAATGT CTTAATCTTACATACCATGGAACTAATGGATACTTATTTTTGACAGTGTTGGTACCCATTTATTCATATTGTTGTTAACA TGTAAACTGACAGTCTTCACTCCAAGTATTGAGTATGAAGTGACTTTTATCATAAGAAAACTGGGCTTTAACCAGGGACA TGAGTTGATTTCATGATTATTTCATCTAGTCATATTTTATTAAAGGGCATCCTAATTTATCTTTTCATTTCTTTTTTCCA AGTTCTTAGTTTATGTGATTGTAGTGTGTTTGGATTTGTTTATTTTGCTTTCAGAAAAAAACCTTATGATCAAAATGTTC AAGATATATAGATTTTGGCCAGAAAGCTTTTTTTTTTCTCTACGTGTGAAATGATAAAAACCAAACATACATATTATAAT TACTTTCTTTGCTATATCTCCTTAACATCTCATCTCTCTATAGGCTATATGCATTCTGGTTTCTTTGTACTTTTTTATAG TTGTTGGAATTGTACTGTATGCATTATAAGCATATATAGTAGTCAAAATTGGTATTATTACTTCAATCGGGATGGGGGTC TTAATCGTAAACGCATAATCGTAAGATTTAGCAAATTTCCTATATATATATGTGTGTGTGTGTGTGTGTGTGTCTGGGTG TGTAAATTCATATATATATGCATACAAAATAGCATAAATAAACCAAAGAAACACTTTCTGGTGCGATTATGTGATTAATC TTACGATTAAACCAGAAAACTATTACAGATGTAATTTTAATCGCCCAAGGCACCATCAATCGCATAATCGTGCGATTAAG TGATTTCAATCGTGAATGATTATAAGGTAGACTTCTACATGTAATTTCCATTATGAAAAAAATTGTGCATATTTATGTAC ACAAGGTTGGATGCATTAGTTTTATAGATTACATGTTAATTGTTTCTCGTTTTCACTGTTCCTTCTACTTTTATTGTTTC AGATTTCTGGTAGGTTATTTTCTGATTCTGGTCCTCGACGTAGTCCAAGACTCTCTAATGATGCAAGTGCTAATCCAAAT GCTAATGCAACTGTTGTATCTGGAAATGGAACTAGCAACTCTTCTAAGTATCTTGGAGGGTCAAAGCTTAGCTCTATGGC TTTTCGTACCATGACAGTTCGTAAGGGACAGTCATGGGCTAATGAAAACGTTGATGAAGGTGATGAATCTTCATATATAG TGCTATTTTACTGTAATCTTGTCTTTTGGGAATGTTATCCACTTATCCTTCATGAAGACTATTTTACTGTAATCTTGTCT TTTGGGAATGTTATCCACTTATCCTTCATGAAGACTATTGTCTTGACTCTTGATTTGGTGCTTTGGTAGTTAAGTTGATC ATGTGCAAAAATACATTTGAGCTGATGATTTTATACTTGTTTTGACAAATATCTTCTATGCTATTATTTCCTTAAAAAAA AGATTAAGAGAAGCATATTTATTAATCATGGACAAAGGTGCAGGAAGCCTTAAAATTAGAATCTAGACAATTTTATATCT CTTACAACTTACAAGATACTCACCTATATTGTTTTTTTCTCATTATCTAAATGAAGAACTGCTCTTGTACAAATAGTGTA AGCTCTACTATTATAATACAGACTCCTAACATAATGATACAAAATATTTCTGAACAGCTATTGACTAATGATTCCTCATT TTTTTTTATCTTAGGGATTCGTAATGATGTTCTAGATGATTCACGTTTGAATGTCACATCGACAAGTTCTAGTTCCTCTA CTTCCATGGAAGTGAAATCTAATGATCAGGAAGCCGTGAATTTTCAAGTTGGTGGACAAGTAATTAGTGGTTCAAAAGTC ATCACTGGTGCTTCAGAAATACTGACCCTTCTAAGAGTTTTTGGTGAAGGTTTTAGACTTGCCTGCTTGTATAGGTGCCA GGTATTATCTTTTCCTTCTGGAGAAAAAACTTATATTCGTCTATTGAATTTTAATTATGGATGTGAAAAGAGAAAACTAA AATGACAAAAATACCTGTCCTAGATCACACTTTCTTTTAACATCTGTTTATTGGTGGAACAGGATGCACTGGATACCTAT CTGAAACTTCCACATAAGCATTACAATACTGGCTGGGTTCTTTCCCTGGTAATTTTGGTTCCTTGTCCTGCATCCTCTAT TTTTTCGTACATAGGAATTATTGGTTTGTATTGATTTAGCAATATACTATATTCAGGCTTAAGATGTTATATTCCAACGT TTTTCTTGAATGGTTAAGATGTTTGAGATTCTGATTGGTGCATATCCCTAACTATTTGTCATGATACATTGATGATTTGA GCAGGTTGGAAGATTGCATTTTGAATTAGTAGATTATTTAGAGGCTGATCGAGCCTTTGGTCTTGCTCGTCAGATTATGC CATATAGTTTGGAAGGAATGGACGTATACTCAACAGTCCTTTATGTGAGTCTATATTACATTTTATCAGTTTCTGCAATG TATTTAATATTGGATAGGCAATGATAAAAAATATTTCTCTAAATTGTTGAACTTACAGGGACTTAGGGTAGAGAAAGAGT AACTGTGAGAACTAACTTTGAATATTATAGAATAGTGATATATGTTGTGTAATGATATGTTACAAAATACAGTGCACAGA TCCCTGTTTATACTAATAATGTTAATCCTAAATTCCTAATTAAATTAATGTGGAAACAAATCATTAAGTATGATGAAATT TGAAAAACACTCCTAAAAAGACTCCAAAATAATTTCTGTACTTTCTTGCTTTCACTTCATGATTAAAATATTGATATATG TTCCTGCATGCTTACTGCTTCACTAAATGACTGATTTATCTTTGGTGTAGCTTCTAAAGGAGGATATGAAGTTGAGCTAC CTGGCTCAGGAGCTAATATCAACTGATCGCTTAGCTCCTCAATCTTGGTATGCTTTTGCGGAACTTCGTATTTTTTTATT CAGTATAAAGAATTGTATGTTTTTTTACTTGAAACTTTCTTCCTTAAAATAATCTCTACTGGCTATTATCCTTCACATTT CTGGAATGACCAATGCTAAATCTCTGAATGCATGCGCTGGGTAAAAACTATGCTGTGCTTGAGTTAATAAATGCAAGTTT TCATGCTGATACCATATTCCAGGCATATATGAAATATGATATGTCAGTAGGTATATTCTGCCTAATACAAGCTTCCATGG CCCATTTGGGTTCATTGTTTTCTTATCTGAGCGATCTGTTTTCAAAGCCTTTTCATGAAATATACTTATCATCACATCAT TTCCTGCTACTTGAGGATCACATGAATGTAATTTTGGCATAGTAGAGCTTGAAGGTTGAAAGTGTTTTTTAGCTTCTGTC AGTTTCTGCTGCAGTGCTCCACTTGGGTGTTCTATTTATAATTTTCATCATTTATGCTGGTGTATCATTTTTTGTTGAAT GCCCTTGCAGGTGTGCCATGGGTAACTGTTACAGCCTGCAGAAAGATCATGAAACTGCACTGAAGAATTTTCAACGAGCT GTTCAACTAAATCCCAGATTCGCATATGCGCACACACTTTGTGGACATGAGTATGAACATGGTCATTTTGTTTACGATAC ATTTGTGCGTGCGGATTTTGCAACTTTTTAAGGTCTTCTAATTCATTGCTGTTTAACAGGTATGTTGCGCTAGAAGATTA TGAGAATGGTATCAAATGCTACCAGAGTGCACTCAGGGTTGATGCAAGGCACTACAATGCCTGGTATGGACTTGGAATGA TATATCTTCGCCAAGAGAAGTTTGAGTTCTCTGAACATCATTTTCGGATGGCTTTCCAAATCAATCCTCGCTCATCCGTT ATAATGTCATACCTTGGAACTGCTTTGCATGCTTTGAAGGTTTATCTCGTGCTGCACTGATTATAGTACTACAAGTTACA ACTAAGAACTACATGTGTCTTTTGTTTTTTCGTATCCCGAATTCTGAAATTATGATATGCTTTTATGACTTGACAGAGAA GCGAGGAAGCGCTGGTGGTAATGGAGAAGGCTATCTTGGCAGATAAGAAAAATCCTCTTCCAATGTATCAGAAGGCCAAT ATACTCATGAGCTTGGAAAGATTGGACGAGGCTTTGGAAGTCCTGGAGGAGCTTAAAGAGTATGCTCCCCGTGAATGCAG TGTATATGCTTTGATGGGAAGGATCTATAAAAGGCGTAACATGCATGAGAAAGCAATGCTTCATTATGGTATTTCTTTGG ATTTGAAACCATCTGCAACAGATGCTGCTGCCATTAAGGTGATTGGATCAATTTGCCTAAACTGGACAACAATGTTTATT TTACAAGTCATATTTTTTCTTATTTTTGTGTTTTCTGATTGGTTTGTGAAAGTTTAGTTTTTCATTAACTGTTGGGGCTG GCTACTCTTGAAAATGTTGGAACTTCTGGTTATTGTTGCCTTATTTATGCAATTTAAACTTCTTCCATTCAATTGTGACA GGCTGCCATTGAGAAATTGCATGTGCCTGATGAGATGGAAGACAACTTGTAG
CDS sequence (LotjaGi1g1v0524200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCTTCTTAGTGAAGCTGAAGCAGCATTATGTCCTGTCAATGAGCCTAGTGCAGAGGTCCCAAATGGTGCAGCTGG TCATCATCTATTAGGGCTCATTTACAGATATACTGACAGAAGGAGAAGTGCCATACATCATTTTAAGCAGGCACTATTGG TGGATCCTCTAATGTGGGCAGCATATGAGGAGTTGTGCATATTAGGCGCTGCTGAAGAAGCTACTGCAGTTTTTGGTGAA GCAGCTGCTCTTTGTATACAAAAGCAATACCTAAATTGCTCAACTACTCCAAAGCTGCATTCATCTACTGAGGATTGTAA TTTGGTTGACACTAGACACAGTGCATCAGAAGATGTGAATCCAAGGCAACTGAAACTCATGCAAGGCCTAAAGGATATTC CTCTAAATCATCATGGAGCATCTATATTAGGAGGAACTTCTGGTCAACCTATTAATAGTGGTCCGTCTAACATTTCATTT TATAACACCCCATCTCCAATGGTAACGCAGTTGTCAGGTGTTGCTCCGCCCCCTTTGTGTAGGAATGTGCAGCTAAATGG CTCAAATCTGAGCACTGTTGGTGCAGAGAGTTCTCCTAAATCAACAGTAAACTCTACTATTCAAGCCCCCCGAAGAAAGT TTGTTGATGAAGGAAAGTTACGAAAGATTTCTGGTAGGTTATTTTCTGATTCTGGTCCTCGACGTAGTCCAAGACTCTCT AATGATGCAAGTGCTAATCCAAATGCTAATGCAACTGTTGTATCTGGAAATGGAACTAGCAACTCTTCTAAGTATCTTGG AGGGTCAAAGCTTAGCTCTATGGCTTTTCGTACCATGACAGTTCGTAAGGGACAGTCATGGGCTAATGAAAACGTTGATG AAGGGATTCGTAATGATGTTCTAGATGATTCACGTTTGAATGTCACATCGACAAGTTCTAGTTCCTCTACTTCCATGGAA GTGAAATCTAATGATCAGGAAGCCGTGAATTTTCAAGTTGGTGGACAAGTAATTAGTGGTTCAAAAGTCATCACTGGTGC TTCAGAAATACTGACCCTTCTAAGAGTTTTTGGTGAAGGTTTTAGACTTGCCTGCTTGTATAGGTGCCAGGATGCACTGG ATACCTATCTGAAACTTCCACATAAGCATTACAATACTGGCTGGGTTCTTTCCCTGGTTGGAAGATTGCATTTTGAATTA GTAGATTATTTAGAGGCTGATCGAGCCTTTGGTCTTGCTCGTCAGATTATGCCATATAGTTTGGAAGGAATGGACGTATA CTCAACAGTCCTTTATCTTCTAAAGGAGGATATGAAGTTGAGCTACCTGGCTCAGGAGCTAATATCAACTGATCGCTTAG CTCCTCAATCTTGGTGTGCCATGGGTAACTGTTACAGCCTGCAGAAAGATCATGAAACTGCACTGAAGAATTTTCAACGA GCTGTTCAACTAAATCCCAGATTCGCATATGCGCACACACTTTGTGGACATGAGTATGTTGCGCTAGAAGATTATGAGAA TGGTATCAAATGCTACCAGAGTGCACTCAGGGTTGATGCAAGGCACTACAATGCCTGGTATGGACTTGGAATGATATATC TTCGCCAAGAGAAGTTTGAGTTCTCTGAACATCATTTTCGGATGGCTTTCCAAATCAATCCTCGCTCATCCGTTATAATG TCATACCTTGGAACTGCTTTGCATGCTTTGAAGAGAAGCGAGGAAGCGCTGGTGGTAATGGAGAAGGCTATCTTGGCAGA TAAGAAAAATCCTCTTCCAATGTATCAGAAGGCCAATATACTCATGAGCTTGGAAAGATTGGACGAGGCTTTGGAAGTCC TGGAGGAGCTTAAAGAGTATGCTCCCCGTGAATGCAGTGTATATGCTTTGATGGGAAGGATCTATAAAAGGCGTAACATG CATGAGAAAGCAATGCTTCATTATGGTATTTCTTTGGATTTGAAACCATCTGCAACAGATGCTGCTGCCATTAAGGCTGC CATTGAGAAATTGCATGTGCCTGATGAGATGGAAGACAACTTGTAG
Protein sequence (LotjaGi1g1v0524200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLLSEAEAALCPVNEPSAEVPNGAAGHHLLGLIYRYTDRRRSAIHHFKQALLVDPLMWAAYEELCILGAAEEATAVFGE AAALCIQKQYLNCSTTPKLHSSTEDCNLVDTRHSASEDVNPRQLKLMQGLKDIPLNHHGASILGGTSGQPINSGPSNISF YNTPSPMVTQLSGVAPPPLCRNVQLNGSNLSTVGAESSPKSTVNSTIQAPRRKFVDEGKLRKISGRLFSDSGPRRSPRLS NDASANPNANATVVSGNGTSNSSKYLGGSKLSSMAFRTMTVRKGQSWANENVDEGIRNDVLDDSRLNVTSTSSSSSTSME VKSNDQEAVNFQVGGQVISGSKVITGASEILTLLRVFGEGFRLACLYRCQDALDTYLKLPHKHYNTGWVLSLVGRLHFEL VDYLEADRAFGLARQIMPYSLEGMDVYSTVLYLLKEDMKLSYLAQELISTDRLAPQSWCAMGNCYSLQKDHETALKNFQR AVQLNPRFAYAHTLCGHEYVALEDYENGIKCYQSALRVDARHYNAWYGLGMIYLRQEKFEFSEHHFRMAFQINPRSSVIM SYLGTALHALKRSEEALVVMEKAILADKKNPLPMYQKANILMSLERLDEALEVLEELKEYAPRECSVYALMGRIYKRRNM HEKAMLHYGISLDLKPSATDAAAIKAAIEKLHVPDEMEDNL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 681 | 681 | 3.4E-230 | – | |
| PANTHER | 1 | 681 | 681 | 3.4E-230 | – | |
| Gene3D | 2 | 79 | 78 | 1.3E-12 | ||
| SUPERFAMILY | 20 | 418 | 399 | 1.23E-10 | ||
| ProSiteProfiles | 25 | 58 | 34 | 8.486 | ||
| SMART | 25 | 58 | 34 | 0.22 | ||
| ProSiteProfiles | 25 | 58 | 34 | 8.673 | ||
| MobiDBLite | 225 | 264 | 40 | - | – | |
| MobiDBLite | 234 | 264 | 31 | - | – | |
| Gene3D | 345 | 419 | 75 | 1.9E-19 | ||
| ProSiteProfiles | 387 | 420 | 34 | 5.782 | ||
| Gene3D | 420 | 552 | 133 | 3.7E-45 | ||
| SUPERFAMILY | 448 | 660 | 213 | 1.56E-35 | ||
| SMART | 455 | 488 | 34 | 6.2E-7 | ||
| ProSiteProfiles | 455 | 488 | 34 | 12.302 | ||
| ProSiteProfiles | 455 | 658 | 204 | 41.632 | ||
| Pfam | 456 | 488 | 33 | 7.9E-9 | ||
| SMART | 489 | 522 | 34 | 0.013 | ||
| ProSiteProfiles | 489 | 522 | 34 | 9.057 | ||
| Pfam | 496 | 539 | 44 | 1.0E-5 | – | |
| ProSiteProfiles | 523 | 556 | 34 | 10.856 | ||
| SMART | 523 | 556 | 34 | 0.0016 | ||
| Gene3D | 553 | 656 | 104 | 6.9E-24 | ||
| ProSiteProfiles | 557 | 590 | 34 | 6.667 | ||
| SMART | 557 | 590 | 34 | 22.0 | ||
| Pfam | 571 | 633 | 63 | 3.5E-6 | – | |
| SMART | 591 | 624 | 34 | 15.0 | ||
| ProSiteProfiles | 591 | 624 | 34 | 6.461 | ||
| Coils | 597 | 617 | 21 | - | – | |
| SMART | 625 | 658 | 34 | 2.0 | ||
| ProSiteProfiles | 625 | 658 | 34 | 8.496 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0524200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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