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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR012675
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 73 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.777s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0198389.1
n.a. Molybdopterin synthase sulfur carrier subunit [Medicago truncatula] gi|357455873|ref|XP_003598217.1| chr0 96745137 96747427 -
2 domain predictions
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Lj0g3v0323599.1
n.a. PREDICTED: ferredoxin-2-like [Cicer arietinum] gi|502152646|ref|XP_004509024.1| chr0 169008180 169018845 +
2 domain predictions
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Lj0g3v0336509.1
n.a. succinate dehydrogenase [Mangifera indica] gi|107770481|gb|ABF83897.1| chr0 176211857 176212009 +
2 domain predictions
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Lj0g3v0336519.1
n.a. PREDICTED: succinate dehydrogenase [ubiquinone] gi|502089528|ref|XP_004488937.1| chr0 176212005 176212349 +
2 domain predictions
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Lj1g3v1219010.1
n.a. PREDICTED: developmentally-regulated GTP-binding protein 1-like [Glycine max] gi|356516297|ref|XP_003526832.1| chr1 14820836 14828158 +
2 domain predictions
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Lj1g3v3150030.1
n.a. PREDICTED: ubiquitin-related modifier 1 homolog 1-like [Cicer arietinum] gi|502157460|ref|XP_004510884.1| chr1 35875550 35877101 +
2 domain predictions
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Lj1g3v3597210.1
n.a. PREDICTED: adrenodoxin-like protein, mitochondrial-like [Cicer arietinum] gi|502103229|ref|XP_004492232.1| chr1 41395355 41396799 +
2 domain predictions
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Lj1g3v3717040.1
n.a. GTP pyrophosphokinase [Medicago truncatula] gi|357481159|ref|XP_003610865.1| chr1 42876185 42878295 +
2 domain predictions
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Lj1g3v3740570.1
n.a. PREDICTED: succinate dehydrogenase [ubiquinone] gi|502089528|ref|XP_004488937.1| chr1 42988414 42994267 +
2 domain predictions
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Lj1g3v3751710.1
n.a. PREDICTED: succinate dehydrogenase [ubiquinone] gi|502089528|ref|XP_004488937.1| chr1 43041544 43045809 -
2 domain predictions
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Lj1g3v3751710.2
n.a. PREDICTED: succinate dehydrogenase [ubiquinone] gi|502089528|ref|XP_004488937.1| chr1 43043427 43045809 -
2 domain predictions
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Lj1g3v4875630.1
n.a. PREDICTED: GTP pyrophosphokinase-like isoform X1 [Cicer arietinum] gi|502112635|ref|XP_004494394.1| chr1 59138738 59146434 -
2 domain predictions
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Lj1g3v4897990.1
n.a. PREDICTED: ferredoxin-3, chloroplastic-like isoform X1 [Cicer arietinum] gi|502120992|ref|XP_004497151.1| chr1 59371732 59373840 +
2 domain predictions
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Lj2g3v1378840.2
n.a. PREDICTED: threonyl-tRNA synthetase, mitochondrial-like [Glycine max] gi|356497888|ref|XP_003517788.1| chr2 21766122 21774927 -
2 domain predictions
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Lj2g3v2124850.1
n.a. PREDICTED: guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase-like isoform X1 [Cicer arietinum] gi|502159240|ref|XP_004511439.1| chr2 32022438 32033898 -
2 domain predictions
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Lj3g3v0394900.1
n.a. PREDICTED: GTP-dependent nucleic acid-binding protein engD [Glycine max] gi|356526427|ref|XP_003531819.1| chr3 3220755 3226862 +
2 domain predictions
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Lj3g3v0394900.2
n.a. PREDICTED: GTP-dependent nucleic acid-binding protein engD [Glycine max] gi|356526427|ref|XP_003531819.1| chr3 3220755 3227851 +
2 domain predictions
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Lj3g3v1694660.1
n.a. PREDICTED: xanthine dehydrogenase 1-like isoform X2 [Cicer arietinum] gi|502081768|ref|XP_004486962.1| chr3 21618391 21625497 -
2 domain predictions
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Lj3g3v1929780.1
n.a. PREDICTED: molybdopterin synthase sulfur carrier subunit-like [Cicer arietinum] gi|502127319|ref|XP_004499653.1| chr3 24815561 24816401 -
2 domain predictions
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Lj3g3v2994500.2
n.a. Ferredoxin-6 [Medicago truncatula] gi|357471641|ref|XP_003606105.1| chr3 37106188 37106755 -
2 domain predictions
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Lj4g3v0485140.1
n.a. PREDICTED: succinate dehydrogenase [ubiquinone] gi|502089528|ref|XP_004488937.1| chr4 7960029 7960773 -
2 domain predictions
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Lj4g3v2215060.1
n.a. PREDICTED: 2Fe-2S ferredoxin-like [Glycine max] gi|356547972|ref|XP_003542378.1| chr4 30507829 30510548 -
2 domain predictions
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Lj4g3v2215060.2
n.a. PREDICTED: 2Fe-2S ferredoxin-like [Glycine max] gi|356528054|ref|XP_003532620.1| chr4 30508972 30510548 -
2 domain predictions
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Lj4g3v2690750.1
n.a. 2Fe-2S ferredoxin-like superfamily protein, A,ATFD2 [Theobroma cacao] gi|508706205|gb|EOX98101.1| chr4 36223875 36225098 -
2 domain predictions
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Lj4g3v3096070.1
n.a. PREDICTED: 2Fe-2S ferredoxin-like isoform X1 [Cicer arietinum] gi|502080842|ref|XP_004486700.1| chr4 41100854 41104703 -
2 domain predictions
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Lj5g3v0550180.1
n.a. Electron carrier/ electron transporter/ iron ion binding protein [Medicago truncatula] gi|357436821|ref|XP_003588686.1| chr5 6524561 6528131 -
2 domain predictions
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Lj6g3v0409410.1
n.a. PREDICTED: NADH dehydrogenase [ubiquinone] gi|356539814|ref|XP_003538388.1| chr6 3708763 3714644 -
2 domain predictions
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Lj6g3v1641150.1
n.a. PREDICTED: obg-like ATPase 1-like [Glycine max] gi|356555899|ref|XP_003546267.1| chr6 18508777 18516818 -
2 domain predictions
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Lj6g3v1641150.2
n.a. PREDICTED: obg-like ATPase 1-like [Glycine max] gi|356555899|ref|XP_003546267.1| chr6 18508777 18516818 -
2 domain predictions
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Lj6g3v2274750.2
n.a. PREDICTED: ferredoxin-1, chloroplastic-like [Cicer arietinum] gi|502076836|ref|XP_004485473.1| chr6 26583174 26584985 +
2 domain predictions
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LotjaGi1g1v0218600_LC.1
n.a. Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0L9UIZ5|A0A0L9UIZ5_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0218600_LC LjG1.1_chr1 48345422 48345950 +
2 domain predictions
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LotjaGi1g1v0312100.1
n.a. GTPase obg; TAIR: AT4G39520.1 GTP-binding protein-like protein; Swiss-Prot: sp|Q9SVA6|DRG3_ARATH Developmentally-regulated G-protein 3; TrEMBL-Plants: tr|A0A1J7H966|A0A1J7H966_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0312100 LjG1.1_chr1 75614886 75625331 +
2 domain predictions
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LotjaGi1g1v0529900.1
n.a. Ubiquitin-related modifier 1 homolog; TAIR: AT3G61113.1 Ubiquitin related modifier 1; Swiss-Prot: sp|B3H7G2|URM12_ARATH Ubiquitin-related modifier 1 homolog 2; TrEMBL-Plants: tr|I3SD67|I3SD67_LOTJA Ubiquitin-related modifier 1 homolog; Found in the gene: LotjaGi1g1v0529900 LjG1.1_chr1 105703236 105705244 +
2 domain predictions
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LotjaGi1g1v0529900.2
n.a. Ubiquitin-related modifier 1 homolog; TAIR: AT3G61113.1 Ubiquitin related modifier 1; Swiss-Prot: sp|B3H7G2|URM12_ARATH Ubiquitin-related modifier 1 homolog 2; TrEMBL-Plants: tr|I3SD67|I3SD67_LOTJA Ubiquitin-related modifier 1 homolog; Found in the gene: LotjaGi1g1v0529900 LjG1.1_chr1 105703828 105704836 +
2 domain predictions
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LotjaGi1g1v0529900.3
n.a. Ubiquitin-related modifier 1 homolog; TAIR: AT2G45695.1 Ubiquitin related modifier 1; Swiss-Prot: sp|A0MDQ1|URM11_ARATH Ubiquitin-related modifier 1 homolog 1; TrEMBL-Plants: tr|I3SD67|I3SD67_LOTJA Ubiquitin-related modifier 1 homolog; Found in the gene: LotjaGi1g1v0529900 LjG1.1_chr1 105703828 105704836 +
2 domain predictions
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LotjaGi1g1v0616900.1
n.a. Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0S3SJV1|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0616900 LjG1.1_chr1 116347831 116354076 +
2 domain predictions
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LotjaGi1g1v0616900.2
n.a. Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0S3SJV1|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0616900 LjG1.1_chr1 116348266 116353523 +
2 domain predictions
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LotjaGi1g1v0617600.1
n.a. Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0S3SJV1|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0617600 LjG1.1_chr1 116432456 116441491 -
2 domain predictions
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LotjaGi1g1v0617600.2
n.a. Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0S3SJV1|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0617600 LjG1.1_chr1 116437122 116441459 -
2 domain predictions
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LotjaGi1g1v0617600.3
n.a. Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0S3SJV1|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0617600 LjG1.1_chr1 116437230 116441401 -
2 domain predictions
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LotjaGi1g1v0763000.1
n.a. GTP pyrophosphokinase; TAIR: AT4G02260.2 RELA/SPOT homolog 1; Swiss-Prot: sp|P0DKG8|RSH1L_ARATH Putative GTP diphosphokinase RSH1, chloroplastic; TrEMBL-Plants: tr|A0A0B2QGP0|A0A0B2QGP0_GLYSO GTP pyrophosphokinase; Found in the gene: LotjaGi1g1v0763000 LjG1.1_chr1 133562536 133570789 -
2 domain predictions
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LotjaGi1g1v0763000.2
n.a. GTP pyrophosphokinase; TAIR: AT4G02260.2 RELA/SPOT homolog 1; Swiss-Prot: sp|P0DKG8|RSH1L_ARATH Putative GTP diphosphokinase RSH1, chloroplastic; TrEMBL-Plants: tr|A0A0B2QGP0|A0A0B2QGP0_GLYSO GTP pyrophosphokinase; Found in the gene: LotjaGi1g1v0763000 LjG1.1_chr1 133563377 133568827 -
2 domain predictions
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LotjaGi1g1v0763000.3
n.a. GTP pyrophosphokinase; TAIR: AT4G02260.2 RELA/SPOT homolog 1; Swiss-Prot: sp|P0DKG8|RSH1L_ARATH Putative GTP diphosphokinase RSH1, chloroplastic; TrEMBL-Plants: tr|A0A0B2QGP0|A0A0B2QGP0_GLYSO GTP pyrophosphokinase; Found in the gene: LotjaGi1g1v0763000 LjG1.1_chr1 133563377 133569007 -
2 domain predictions
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LotjaGi1g1v0763000.4
n.a. GTP pyrophosphokinase; TAIR: AT4G02260.2 RELA/SPOT homolog 1; Swiss-Prot: sp|P0DKG8|RSH1L_ARATH Putative GTP diphosphokinase RSH1, chloroplastic; TrEMBL-Plants: tr|A0A0B2QGP0|A0A0B2QGP0_GLYSO GTP pyrophosphokinase; Found in the gene: LotjaGi1g1v0763000 LjG1.1_chr1 133563377 133570365 -
2 domain predictions
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LotjaGi1g1v0765600.1
n.a. Ferredoxin family protein; TAIR: AT2G27510.1 ferredoxin 3; Swiss-Prot: sp|P27788|FER3_MAIZE Ferredoxin-3, chloroplastic; TrEMBL-Plants: tr|I3S8M2|I3S8M2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0765600 LjG1.1_chr1 133884065 133886884 +
2 domain predictions
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LotjaGi1g1v0765600.2
n.a. Ferredoxin family protein; TAIR: AT2G27510.1 ferredoxin 3; Swiss-Prot: sp|P27788|FER3_MAIZE Ferredoxin-3, chloroplastic; TrEMBL-Plants: tr|I3S8M2|I3S8M2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0765600 LjG1.1_chr1 133885718 133886182 +
2 domain predictions
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LotjaGi2g1v0318100.1
n.a. Threonine--tRNA ligase; TAIR: AT5G26830.1 Threonyl-tRNA synthetase; Swiss-Prot: sp|O04630|SYTM1_ARATH Threonine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A0S3T3W6|A0A0S3T3W6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0318100 LjG1.1_chr2 79300976 79310558 -
2 domain predictions
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LotjaGi2g1v0318100.2
n.a. Threonine--tRNA ligase; TAIR: AT5G26830.1 Threonyl-tRNA synthetase; Swiss-Prot: sp|O04630|SYTM1_ARATH Threonine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A0S3T3W6|A0A0S3T3W6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0318100 LjG1.1_chr2 79302473 79310414 -
2 domain predictions
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LotjaGi2g1v0318100.3
n.a. Threonine--tRNA ligase; TAIR: AT5G26830.1 Threonyl-tRNA synthetase; Swiss-Prot: sp|O04630|SYTM1_ARATH Threonine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A0S3T3W6|A0A0S3T3W6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0318100 LjG1.1_chr2 79302478 79310414 -
2 domain predictions
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LotjaGi2g1v0448600.1
n.a. Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase; TAIR: AT1G54130.1 RELA/SPOT homolog 3; Swiss-Prot: sp|Q9SYH1|RSH3C_ARATH Probable GTP diphosphokinase RSH3, chloroplastic; TrEMBL-Plants: tr|A0A0B2R105|A0A0B2R105_GLYSO Putative GTP pyrophosphokinase; Found in the gene: LotjaGi2g1v0448600 LjG1.1_chr2 94227276 94242750 -
2 domain predictions
 –