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LotjaGi1g1v0531300.1

Overview

Field Value
Gene ID LotjaGi1g1v0531300
Transcript ID LotjaGi1g1v0531300.1
Lotus japonicus genome version Gifu v1.2
Description Glutamate decarboxylase; TAIR: AT1G27980.1 dihydrosphingosine phosphate lyase; Swiss-Prot: sp|Q9C509|SGPL_ARATH Sphingosine-1-phosphate lyase; TrEMBL-Plants: tr|I1N505|I1N505_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0531300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:105828881..105835983) extracted from Lotus japonicus Gifu genome v1.2.

GTTTCTTGATACATAGCAGAAAACACACGTGACACGGCACGCAACTTCGAGGAAACTACTTCTACGCAACGTGATAATAA TAACAAAGCCCCCTTCAATCAAATCAAATACTCCTAGTTCTACTTTTCTTATAAAACTGTATTACTCTGACCACTAACCA AGCTTATCGATCTGATTCATTTCTCTTCTTCTTCTTCTTCTTCTTCTTCGTTTGTTTCGCGCAATGGAATTTTCTTCGTT TTCTTCTTCCTTCATCTTCCACTTCAACCGCTTCAGAACCATCGCGAACTCGTTCCTCTCGCAATACGAGCCACTCGCTC TGCTCATCGTTCCTCTCATCTCCCTCCTCATCGCTCACGCACTTCGCTCTTTCCTCAACATCCTCCATGACAAGGGTCTC AAAGCAACTATCCTAGGGTTTCTCATGACCTCCATCAAGTACGCAACAAAACAAAACTGCACTTCACTCAGTGTTTGTTT TCTTCGTAAAAGCTAATTAGTCATTGGATTAATCTATCAATCTCATTTGCGATTTTGTTTGGATTTGCAGATTGGTTCCT GGTGTGAAGAGTTACATTGATGCTGAGAAAAAGAAGGTTAGTACATTAAAATGATTAGATGCTATGCAAGGTGACATTAG GACAGGGTATTACATAGGGAATGGACATTTCATCTTCTGTTCCATACTCTTAGTTTTTTAGTGTAGCGTACCCTTGAAAT TTGTGGTTAATAATAAAAAGTTTGCTATGGGTTTTTCATATGAAGCTTGTCACTTTACCTTCATCTGTAGGGTCGGTTTG GTATGGGGGTAAAAACAGATAAAAAAATAGAGGTGGTTTTTTTTACCGAATTTGTAAAAATGAATTGAAGATTGATTAAT GAATTTAGGTTCCATGAGTTGATGAAGTCAGTTGGGTTTTCAAGTAAGATTGTTATGTCGAATAAAAAAACAGGGTTCAC TTTGTAGCATTATTCTCGTTCCTTTAGCTGTAGATGAATACTAGGATTGGATTTGGATCTGATTTTCTAGAACATTTGGA ATGTCCTGTTTGGAATCAGGGTAGACTTTAGTTATTTGTTAATAACTAGGTGTACACTCTGTTTTAACAAGTAGCTATTT TCTTTAAGCCATGAATTGTGGGGGGTGACTAAGAGTGCGTTTGGGTAAACAACTTAATTAAGCGCGTATTTCAATAAGGG TTTATGCATAAGTTTATTTGAGAAATTTATTAAAATAAGCTCAAAATATGTTTTAAGTATGTATAAGTGCTTATTCATAT GATCATATCTAATCCGAATAGCTTATGAAATTAAACTCAAAACAGCTTATATGTAGGTCATACACTATTTGCACAAGCTC TTCCAATCACTTACGTATCAAATAAGCTCTTCCAAACTGGGCCTAATTATGTTATTATTCTTGTCATTGAGCGCATAGGT TGTGGAGAAGATGCAGTCTGATGGTAAATCTAAAAGAGAAGGTTGGCAAACAGAGTTGCCAAGCACGGGATTAGGAACAT CTATCCTTGAGAAAATGAGGGAGGAGAAAAGAAAAGATGTGATTTGGCAAGGCAAATGCTCTGGTACAGTGTATGTTAGG AATTTTGGCAACTTTAAATGTTAAATTCTGATTTTCTGATTTTTTGTTTGTTTCAGTCTATTTGATTGTACCAAGGGCTG ATTATTTTTTTTTTCAATTTATTGTTTATTTCCTGCAGCTACATTGGTGGAAATGAATCTGAGGGTCATTTTTCTCTGAT AAATGAGGCATGCTCAATGTTAGTAAAGACCTGGAAAGTTTCAGTTGCATTTTTATGTCTATTACCATAGGAATTTTTAA TTTACTGGTCAACAATTACGCTATTCTAGTTTATACTACTCATGCAGTTGAATTTTGTATAGTTCAGTGGTTTTGAGACT GAGTGAAGTTTCAGTATCCCTACTTCACATTAACAACTATGTTACCTATCTTGCCTTAACATTAATCTGGCTTATGAGAT AGTCTTCCCTAGGCATTATAGGAAGAGAACTTTTGTAATCGTTTGAACTTGGAAATAGTCAAAGCAAGCCTGTGGTCTTC CAATTTTGCTAAAAAGAAATAGAGACATAGAGTTGATTCCATATGTTTCCTAGGCCCATGGAACTGTATCAAAATTAGGT TTTGATTCCAAATTCATCAATGATGGGCTGATGATATTTCTATAAATTTGTTGTATGTATCCAGCAGTTGATGTTAATGA ACTTTCAGGTTTGCACATACCAATCCTTTGCATATGGATGTTTTCCAGAGTGTTGTACGCTTTGAGGCAGAAGTGGTTGC AATGACAGCGGCATTTCTTGGAAGTAAAGAAAAGACATCCGGAGGACAAATATGTGGCAACATGACCTCAGGAGGGACTG AAAGTATATTATTAGCTGTTAAATCAGCTCGTGATTATATGAAATCTAAGAAAGGAATTACAAGACCCGAAATGTATGGC ACAGATAGTTCAATATCTTTGGTAAATTATATTCTCTTTAATATTATTTTAAACTTAACATTTCAATTGTAGGATAATTC CTGAGTCTGGACACTCGGCATATGACAAAGCTGCACAGTATTTTAATATCAAACTATGGCGTGTTCCAGTTAACAAAAGT TTTCAAGCAGATGTGAGAGCAACTCGACGTCATATTAACAAAAATACCATTTTGGTATGAAGTTACTCAATCACGCTCTT TTATTTATTTTTATTTCATAGATTCTATTTAAATGATTCAAAGTTCTTATACAGGATTTTTTATGTGGTATGCAAACTCC CAATAACTTTAATTCTTGTTCTCAAGTGAAATTGACTATCATATGATGATACAGATTGTTGGATCTGCTCCTGGGTATCC TCATGGAATAATTGACCCCATCGAAGTAAGTTTTTCAAATTTTTTAATATAATACTGAAAAAATAAGATAAGTTCAACTT GCTTGCTGAATTACCATAATGCAGACAAATTGGCAATTTCTTCCGTAGGAACTTGGTCATCTAGCCTCAAGCTATGGTGT TTGTTTCCACGTGGACCTTTGCCTTGGTGGCTTTGTATTGCCTTTTGCTCGTGAGCTTGGGTATAGTTCGCATAACTTAT TTATATCAGTAAACTATTATTGATTACTTTGTCGTTTTCATTTCCTTTGATTTTTCATTGTCATTGTTTAGGTGCTATGC TTAAATATTAAAACTTCACTGTAGAGATGAATCTGTCAATGTATTAGGCTTTTTATCCTTTATTTGATATACATTCCAAA TATTTTCTTATGGTTTGAACAGCTTTTCAAGCACTATAGGGACTGTTTCACAAACACATAACATTTCTTTTCAATTTCTC TCTATTTGTTGGTCTTTTGGTTTGTTTGGGTTTATCTATTTAGCATAATATTCTTTTCATCTACTTTATTGGGGTTGGGG TCTACTAATGTTTTGATGATTGTTGATTATATTAATTAAGCATAATACATAAGCAATCATAATATCCCAAGCAAAATGGG AAAAGTGGCACTTCATACTGTAAATAATACATAGGTCTTACCTTATGTTTTCTTAAAATTTAATACCAGTTCAACTAATT ATGCTTACCTTTTCTTCCTAGGTACCACATTCCACCTTGTGATTTTTCTGTTCAAGGGGTTTCTTCAATATCAGTGGATG TGCATAAATATGGGTTAGCTCCCAAAGGAACAAGTGTAGTTCTATATAGGAATCATGAAATCAGAAAGGTAAGTCGGTGG TTTGCTAACATCATGCAGTTACTAAAGATTCTTTTGAAGTCTTTACTTTATGCATGAAATCCAAATTTGGTTATAGAATT TTTTTGCTGTGAATTTTAGCTACATTTTTTTAAAACCTCACCAGTTATGATGGATTTTAATCTTCAAAAATATACTTTCT TTCATATTCCCTTTTTCATTTCCTTCTTTTGATATCCATCAGTGCTGTAAAAGTAACGATTGCATTTCATTACTGATGTT TCCACTCTATACTTCATCACTAGGAATTTTTCCAGATGTAGTGTCTTTTCACAGTTATATTTCCCATTCATATAATCTGA ATTGCCATTTCTCATGGCTTTTCACTCATGGATAGCAAGATGGCTATCCTATGATCATACATGCAAATGGACTTAGCTCT CTTTTCTATTTAATTTTTTTTTCCCTCCCTCCTTTTTCATTTCTATTTTATGAAGTAACTTTTCTGCATCATGGCTTCCT CTGTTATTGGAAAATCGGTTATTGACTTACTTGCAGCTGATTACTAACATATTCTCTTTCTTTCTTCTGGACTCTACAGC ATCAATTTGTTGCTGGTAAGTTTACAATTTGTTTCTGATAAATGTCTGCGGTTGTTTTTTGTTGTGCTTATTTATCAAGT GAAAACATGGGAGGTGAGAAGAGTTAATCTTATTCATACAACCATATGTTGATAGACAAAATTGATCTATTCTCTACCAT TTAATTATAACTGTGTGAAAACATGGGAGGTCAACATGAATTCTTCTCATGAGAGCATATTCTCACCTGATACGCTCCAC ATATGTGTGAGTGTGGGGTCCTTTTTATACAATATTATGATATGCTCAGGGTTAGAGTTTCCTGTTTTAAGTGATTGATA TGATTAACAACCTACAAGAAAAGAGGAAGATGGTTGCTAGTGAGATAAAATTTAGTCTAAGAGCTAGTCTTTGTTTTTAG TTCTAGACAATGGAGCTCGTCATGTATCTATTTAGATTTTAGAGGAAATGTTTTGTCTGCTATTGGGAGTAATTCTAGTG CAGTTTTCTTTGTGATTGCTAATTTGTGCCAATGTCACAGTTACCGAGTGGTCCGGTGGGTTGTATGTATCTCCCACCAT GGCTGGAAGCAGGCCTGGAAGCCTTATTGCTGGTGCATGGGCAGCAATGATGTCTCTTGGAAAAGATGGTAACTAACTGT CCAGAACCTCTCTGCAGCCTTTGAAATAACATTTTGCTTTCCCTCTGCTATCTTTGATGCCTAATGATGGTGTATGGCCA ATTAACTGTCCGATTTATCATACAGGTTACTTGAGAAATACAAAAGCACTTATGGAAGGATCAAAAAGTATACAGAAAGG GTACAGATACTGTTTCTTTTCGAATCTATTTTCAGTGTTGTGCCTTATATTAAAATTTAAATGCGGCGGTTGTGTTATAC GCAGCATAGAAGAGATTGCGGAATTGTTTGTCGTTGGAAGACCCGATATGACAATCGTAGCGTTTGGATCGGATGTTCTG GATATATTTGAAGTTAACGATATTATGTCATCTAAAGGGTGGCATTTGAATGCATTGCAGAGACCCAACAGGTAGCTCAC TGTCTACTAATAGGATCCTGTCCTACAATGTTTCAGGAATTAAACTACGTGTTGGATTATGGCTTTACTTTTAAGAAACT GAAACTTTTTTCTTCTGTGCTTGAATCAGCATCCATATCTGTGTAACACTACAGCTTGTACCAGCTGTTGACGACTTTCT CAAGGATCTAAAGGAATCTGTGGAAACTGTAAGTTGTTCACTAGTGTAGAAATCCTAATTATAATTGGATCAATTAGTGC ATGTTTGGAAATCTTTTGAACATTTACTATGAAGTCAAAATCAATTTTGGGGAGAAGCTTCTATGATTTTGAGGAAAAAG AAGTTGATCCAAACATGCTATTTCACCGACGGTTGATGTGACAGTTCATTGCTTGATACAATGCTATTATCTTGATTTGA TTTAGTATGTTCTGTTTCACAATTCTTTTTCTTTTTCAATCTCAGGTGAAAAAAAATCCTGGCCCAATAAGTGGAGGCCT AGCACCTATATATGGCGCCGCAGGGAAAATGCCAGATAGAGGCATGGTCCAGGAGTTGCTGGTAGATTTTATGGACGGTA CCTGCTAGTGGTGTTCACAACCTCACATGTATTTATTGCACCCTAATTTTCTGAATTTGGGTAGCTCCCTTTTGCACAAT CACGGTCCCTACTCACAATGACGGCCAGCACATGTTCTCTATAGCTTCATTCTGCACAATCACGACCATTAATTTTTACA ATTAATGGTTGAGATTAATCTTAATAAAAATAGATTATTAAATTAAAAAAAATCATGTTTATTTGTCTGCTGGAGAAGAT CCAAATTAGAATTTTCTGTGATATGTTCTGTAACAAACCCCTACTAAATATTATCATTTGATTTTACTGGATATTCTTTA ATATTGAGGGGGTGGCTAAAAGCTCAAATCATTTTGGTATTAATGCTTACCATTGGCTTCAATAAGATGCGAATCATAAA TATTGCACTAAAATATTGAAAACTAAAGAATATTAAAGGCAGAGTAAAATGCATTTGTGTGGATTAAATTGGTTTTGAAA TTCGATTTTAAAAATTAATAGGATCCAATTCATGTTGTACGTGTGTTTTGTAAACATTTGTAATTTTGTATCTATAAATT TATGTATGCCTGCATTTGGATACATGTCCGATTCATCTTCACTGTTTTTTTTTAAATTGTTGTGCCAGTGTTATATATGT GCTTATATCATGTTTCTTTCCTTAATATATACAAGAGCGTGTTTGGAATTACAGTTATACTTTTAAAACCACTTTTTTGT TGGAAAAAAGCTTAGAGGTATGAGTCATTCCTTCCCCTAATATGGTAAGCATATATTAGAAGACAACAATATTGTGGACA TTATTCTGGCTGGATAGTGCTAGCTACTACGCATATACCATAATCAACTAATCTATATGCCACCAGCATTGTGGACCCTA TTTTGATTGGGCATTGCTGCATGGCTACTACCATCAACATGTCTTAGAAACAATTATGTATCAGTGAATCTATAGGTGGG TCAAATCACAATTTTTTCAAAGGCAATAATAGTTATATTTCTGATAAGAAAATACATGCCATAATCGTGTTGACACAAAT TGTCAAAGGTTCTGTCAAACAAACAAATATTTGTCAAAGAGTTTACTCGAGTTTTTATTGGTAAATAGATAAAGAATCTA AGAAGCAATCTGAGGACTGAATTCAAGTCCTTTTGGTAAAAACGTTTAGTATTTATTTCAAAC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0531300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAATTTTCTTCGTTTTCTTCTTCCTTCATCTTCCACTTCAACCGCTTCAGAACCATCGCGAACTCGTTCCTCTCGCA ATACGAGCCACTCGCTCTGCTCATCGTTCCTCTCATCTCCCTCCTCATCGCTCACGCACTTCGCTCTTTCCTCAACATCC TCCATGACAAGGGTCTCAAAGCAACTATCCTAGGGTTTCTCATGACCTCCATCAAATTGGTTCCTGGTGTGAAGAGTTAC ATTGATGCTGAGAAAAAGAAGGTTGTGGAGAAGATGCAGTCTGATGGTAAATCTAAAAGAGAAGGTTGGCAAACAGAGTT GCCAAGCACGGGATTAGGAACATCTATCCTTGAGAAAATGAGGGAGGAGAAAAGAAAAGATGTGATTTGGCAAGGCAAAT GCTCTGGTACAGTCTACATTGGTGGAAATGAATCTGAGGGTCATTTTTCTCTGATAAATGAGGCATGCTCAATGTTTGCA CATACCAATCCTTTGCATATGGATGTTTTCCAGAGTGTTGTACGCTTTGAGGCAGAAGTGGTTGCAATGACAGCGGCATT TCTTGGAAGTAAAGAAAAGACATCCGGAGGACAAATATGTGGCAACATGACCTCAGGAGGGACTGAAAGTATATTATTAG CTGTTAAATCAGCTCGTGATTATATGAAATCTAAGAAAGGAATTACAAGACCCGAAATGATAATTCCTGAGTCTGGACAC TCGGCATATGACAAAGCTGCACAGTATTTTAATATCAAACTATGGCGTGTTCCAGTTAACAAAAGTTTTCAAGCAGATGT GAGAGCAACTCGACGTCATATTAACAAAAATACCATTTTGATTGTTGGATCTGCTCCTGGGTATCCTCATGGAATAATTG ACCCCATCGAAGAACTTGGTCATCTAGCCTCAAGCTATGGTGTTTGTTTCCACGTGGACCTTTGCCTTGGTGGCTTTGTA TTGCCTTTTGCTCGTGAGCTTGGGTACCACATTCCACCTTGTGATTTTTCTGTTCAAGGGGTTTCTTCAATATCAGTGGA TGTGCATAAATATGGGTTAGCTCCCAAAGGAACAAGTGTAGTTCTATATAGGAATCATGAAATCAGAAAGCATCAATTTG TTGCTGTTACCGAGTGGTCCGGTGGGTTGTATGTATCTCCCACCATGGCTGGAAGCAGGCCTGGAAGCCTTATTGCTGGT GCATGGGCAGCAATGATGTCTCTTGGAAAAGATGGTTACTTGAGAAATACAAAAGCACTTATGGAAGGATCAAAAAGTAT ACAGAAAGGCATAGAAGAGATTGCGGAATTGTTTGTCGTTGGAAGACCCGATATGACAATCGTAGCGTTTGGATCGGATG TTCTGGATATATTTGAAGTTAACGATATTATGTCATCTAAAGGGTGGCATTTGAATGCATTGCAGAGACCCAACAGCATC CATATCTGTGTAACACTACAGCTTGTACCAGCTGTTGACGACTTTCTCAAGGATCTAAAGGAATCTGTGGAAACTGTGAA AAAAAATCCTGGCCCAATAAGTGGAGGCCTAGCACCTATATATGGCGCCGCAGGGAAAATGCCAGATAGAGGCATGGTCC AGGAGTTGCTGGTAGATTTTATGGACGGTACCTGCTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0531300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEFSSFSSSFIFHFNRFRTIANSFLSQYEPLALLIVPLISLLIAHALRSFLNILHDKGLKATILGFLMTSIKLVPGVKSY IDAEKKKVVEKMQSDGKSKREGWQTELPSTGLGTSILEKMREEKRKDVIWQGKCSGTVYIGGNESEGHFSLINEACSMFA HTNPLHMDVFQSVVRFEAEVVAMTAAFLGSKEKTSGGQICGNMTSGGTESILLAVKSARDYMKSKKGITRPEMIIPESGH SAYDKAAQYFNIKLWRVPVNKSFQADVRATRRHINKNTILIVGSAPGYPHGIIDPIEELGHLASSYGVCFHVDLCLGGFV LPFARELGYHIPPCDFSVQGVSSISVDVHKYGLAPKGTSVVLYRNHEIRKHQFVAVTEWSGGLYVSPTMAGSRPGSLIAG AWAAMMSLGKDGYLRNTKALMEGSKSIQKGIEEIAELFVVGRPDMTIVAFGSDVLDIFEVNDIMSSKGWHLNALQRPNSI HICVTLQLVPAVDDFLKDLKESVETVKKNPGPISGGLAPIYGAAGKMPDRGMVQELLVDFMDGTC
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 30 30 - –
PANTHER
PTHR42735
14 544 531 1.2E-228 –
PANTHER
PTHR42735:SF6
14 544 531 1.2E-228 –
Phobius
TRANSMEMBRANE
31 51 21 - –
Phobius
CYTOPLASMIC_DOMAIN
52 62 11 - –
Phobius
TRANSMEMBRANE
63 81 19 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
82 545 464 - –
SUPERFAMILY
SSF53383
104 509 406 7.26E-99
IPR015424
Pfam
PF00282
151 450 300 7.8E-20
IPR002129
Gene3D
G3DSA:3.40.640.10
177 409 233 9.7E-122
IPR015421
Gene3D
G3DSA:3.90.1150.10
410 503 94 9.7E-122
IPR015422

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0016831
Molecular function Carboxy-lyase activity Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound.
Subterm of
GO:0019752
Biological process Carboxylic acid metabolic process The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-).
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0531300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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