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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0544600 |
| Transcript ID | LotjaGi1g1v0544600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Eukaryotic translation initiation factor 5; TAIR: AT1G36730.1 Translation initiation factor IF2/IF5; Swiss-Prot: sp|P48724|IF5_PHAVU Eukaryotic translation initiation factor 5; TrEMBL-Plants: tr|A0A0L9TDF5|A0A0L9TDF5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0544600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:107413892..107415289) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGTTACAGAACATTGGTGCTGGTAATCGCGACGATGCCTTCTATAGGTATAAGATGCCTAGAATGATTACCAAAAT TGAGGGTAGAGGTAACGGCATCAAAACAAATGTTGTCAACATGGTTGATATAGCAAAGGCATTGGCGAGGCCAGCGGCTT ACACTACCAAGTATTTCGGTTGTGAACTTGGAGCCCAGTCGAAATTTGATGAGAAGACTGGAACTTCTCATGTCAATGGT GCACATGATACTGCAAAACTTGCTGGCCTCCTTGAGAATTTCATTAAGAAATATGTCCAATGCTATGGCTGTGGAAATCC TGAGACTGAGATATTGATTACTAAGAGTCAAATGATCCAGCTGAAATGTGCTGCTTGTGGTTTTGTGTCTGATGTGGATA TGAGAGACAAGCTAACTACCTTCATCATAAAGAACCCTCCTGAGAGTAAGAAGGGATCCAAAGACAAGAAGGCCATGAGA AGAGCTGAGAAGGAGAGACTGAAAGAAGGTGAAGCAGCTGATGAGGAGCTCAAAAAACTGAAGAAAGAGGTTAAGAAGAA AGGCACTTCGTCTTCTAAGGATGGCACCACCAAATCTAGCTCTTCAAGGAAAAAGGCAAATGGCTCTGATGAGGACCGTA CATCTCCTACTCATAGTCAAATTGATGAGAAGGATGTTGCTCATGAGGAAGACGAAGAAGATGATGATGATGATGTTCAG TGGCTAGCTGATACATCAGCAGAGGCTGCTCGTAAACGTATCCAAGAGCAGTTAAGTGCTGTGACAGCTGATATGGTCAT GCTCACCACAAATGAACCAGAGAAGGAGAAAGTAGCAACTAAGTTAAGTGATAACGCTGAGAATGGTAGCTCCACAAATG GTAAATCTGAGAAAGCAGCAACTAAGGTAAATGACACTTCTGAGAATGGTGGCTCCATGCACTATAGCAAACTGGTTGGG GAAGTCAAAGCAGATTTGAAGAAAGGTGCTACTGCAAAAGAATTGCTGACCCATCTGGCAACACTTCCTGCATCTGCTCA AGAAAAAATGAGTGCTCTGTATGAAGCCCTGTTTGAGGGCACTGAGAAAGGGTTCGCGAAAGTAGCAATTAAGAGGAAGA GCTACCTTGCTGCTGCAGTTTCTCAGGAGGAGGGTATGCAGTTGCCATTGCTGCATGCAATTGAGGAATTTTCCTGCAAG TCCACTTCCAATGCGTTGAAGGAGGTTGCCCTGGTTCTGAAGGCGCTCTACGATGCTGATGTTTTGGAGGAAGAGCACAT AGTTCAGTGGTACCAGAAAGGGCTCAAAGGCGATAACAAGGACTCTCAGATTTGGAAGAATGTTAAGCCTTTTGTTGACT GGCTTCAGAGTGCAGAGTCAGAATCAGAGGAAGAGTAA
CDS sequence (LotjaGi1g1v0544600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTTACAGAACATTGGTGCTGGTAATCGCGACGATGCCTTCTATAGGTATAAGATGCCTAGAATGATTACCAAAAT TGAGGGTAGAGGTAACGGCATCAAAACAAATGTTGTCAACATGGTTGATATAGCAAAGGCATTGGCGAGGCCAGCGGCTT ACACTACCAAGTATTTCGGTTGTGAACTTGGAGCCCAGTCGAAATTTGATGAGAAGACTGGAACTTCTCATGTCAATGGT GCACATGATACTGCAAAACTTGCTGGCCTCCTTGAGAATTTCATTAAGAAATATGTCCAATGCTATGGCTGTGGAAATCC TGAGACTGAGATATTGATTACTAAGAGTCAAATGATCCAGCTGAAATGTGCTGCTTGTGGTTTTGTGTCTGATGTGGATA TGAGAGACAAGCTAACTACCTTCATCATAAAGAACCCTCCTGAGAGTAAGAAGGGATCCAAAGACAAGAAGGCCATGAGA AGAGCTGAGAAGGAGAGACTGAAAGAAGGTGAAGCAGCTGATGAGGAGCTCAAAAAACTGAAGAAAGAGGTTAAGAAGAA AGGCACTTCGTCTTCTAAGGATGGCACCACCAAATCTAGCTCTTCAAGGAAAAAGGCAAATGGCTCTGATGAGGACCGTA CATCTCCTACTCATAGTCAAATTGATGAGAAGGATGTTGCTCATGAGGAAGACGAAGAAGATGATGATGATGATGTTCAG TGGCTAGCTGATACATCAGCAGAGGCTGCTCGTAAACGTATCCAAGAGCAGTTAAGTGCTGTGACAGCTGATATGGTCAT GCTCACCACAAATGAACCAGAGAAGGAGAAAAAAGCAGCAACTAAGGTAAATGACACTTCTGAGAATGGTGGCTCCATGC ACTATAGCAAACTGGTTGGGGAAGTCAAAGCAGATTTGAAGAAAGGTGCTACTGCAAAAGAATTGCTGACCCATCTGGCA ACACTTCCTGCATCTGCTCAAGAAAAAATGAGTGCTCTGTATGAAGCCCTGTTTGAGGGCACTGAGAAAGGGTTCGCGAA AGTAGCAATTAAGAGGAAGAGCTACCTTGCTGCTGCAGTTTCTCAGGAGGAGGGTATGCAGTTGCCATTGCTGCATGCAA TTGAGGAATTTTCCTGCAAGTCCACTTCCAATGCGTTGAAGGAGGTTGCCCTGGTTCTGAAGGCGCTCTACGATGCTGAT GTTTTGGAGGAAGAGCACATAGTTCAGTGGTACCAGAAAGGGCTCAAAGGCGATAACAAGGACTCTCAGATTTGGAAGAA TGTTAAGCCTTTTGTTGACTGGCTTCAGAGTGCAGAGTCAGAATCAGAGGAAGAGTAA
Protein sequence (LotjaGi1g1v0544600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALQNIGAGNRDDAFYRYKMPRMITKIEGRGNGIKTNVVNMVDIAKALARPAAYTTKYFGCELGAQSKFDEKTGTSHVNG AHDTAKLAGLLENFIKKYVQCYGCGNPETEILITKSQMIQLKCAACGFVSDVDMRDKLTTFIIKNPPESKKGSKDKKAMR RAEKERLKEGEAADEELKKLKKEVKKKGTSSSKDGTTKSSSSRKKANGSDEDRTSPTHSQIDEKDVAHEEDEEDDDDDVQ WLADTSAEAARKRIQEQLSAVTADMVMLTTNEPEKEKKAATKVNDTSENGGSMHYSKLVGEVKADLKKGATAKELLTHLA TLPASAQEKMSALYEALFEGTEKGFAKVAIKRKSYLAAAVSQEEGMQLPLLHAIEEFSCKSTSNALKEVALVLKALYDAD VLEEEHIVQWYQKGLKGDNKDSQIWKNVKPFVDWLQSAESESEEE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 445 | 445 | 9.7E-249 | – | |
| PANTHER | 1 | 445 | 445 | 9.7E-249 | – | |
| SUPERFAMILY | 10 | 101 | 92 | 2.22E-21 | ||
| Pfam | 11 | 127 | 117 | 1.9E-36 | ||
| SMART | 15 | 129 | 115 | 3.0E-63 | ||
| Gene3D | 24 | 99 | 76 | 2.4E-30 | – | |
| SUPERFAMILY | 98 | 133 | 36 | 2.75E-7 | ||
| Gene3D | 101 | 145 | 45 | 2.9E-17 | – | |
| MobiDBLite | 144 | 238 | 95 | - | – | |
| MobiDBLite | 148 | 225 | 78 | - | – | |
| Coils | 167 | 187 | 21 | - | – | |
| MobiDBLite | 273 | 292 | 20 | - | – | |
| ProSiteProfiles | 288 | 445 | 158 | 26.57 | ||
| Gene3D | 291 | 445 | 155 | 3.4E-30 | ||
| CDD | 295 | 438 | 144 | 1.31451E-32 | – | |
| SUPERFAMILY | 296 | 439 | 144 | 5.75E-25 | ||
| SMART | 353 | 441 | 89 | 1.3E-31 | ||
| Pfam | 367 | 445 | 79 | 1.2E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation initiation factor activity | Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Translational initiation | The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. |
Expression pattern of LotjaGi1g1v0544600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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