Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0544800 |
| Transcript ID | LotjaGi1g1v0544800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Eukaryotic translation initiation factor 5; TAIR: AT1G36730.1 Translation initiation factor IF2/IF5; Swiss-Prot: sp|P48724|IF5_PHAVU Eukaryotic translation initiation factor 5; TrEMBL-Plants: tr|A0A0L9TDF5|A0A0L9TDF5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0544800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:107419037..107422868) extracted from Lotus japonicus Gifu genome v1.2.
GAGAAGAGAGTTTGGGTTTAAGAAAGGCATAACCCGACCCGACCCGTCTTGTTTAGGTTAGATTGATGTGTGTATCTCAA ATGCCACGAAAAACATAAAATAAACACCGAACCGGCCCATCAAGAATATTGAAACCCCATAACCTCAACCAACCAACGCC TATATAACTAAATATCATTCACGGCGCCGCCTCCACATCTCAAACTTGCTCCCACACACCACAACACCAGCTTCTCCTCC TCATCTCAGGTAACAACTTTTCATGTGATCATGTTTTTTGATTCATCTGTTTGCATCTGCCTATGTTGTCTGTGCTTGAT TGTTTTCTAGCAACAAGAGTCAAACATGTTACTTAGCATGCTTATTCAACTTGTTTTCCTACTGGGGTTAATGGGTCTTT TTTTTTTAATGTTGGTGGTGTTTGATATTTGAAGTAGAACTCCTTGACAATAGAGATTTGAGATGAACCCAGATGAATTT TTTGAAGATATTGCTTCCTGAAAGTTGAAACTCTAATTTCTTGTTAGTACTTGCTGGGGTTTGTTACAAGTATGATCTGG TAGCTTAGGTATTACCAGGATCGTGAGTGCTGGGGTGTCTAGGTGCTGACCCCTTGGCTATGATCCTGAAGTTTATCATT GAATTTTTCTGGTGGAGGGGGAACTGGATTCTCTGAAGTTGAAAAATGAACTGCATTGTCATGTAGTTCTATCCTATGAT TGGTGTTTGATGAACTTATAGTTATACTGTTATTATGTTATATGCTTTTGTTTGTGTGTGTGTGGTTGAGGTATTGCTGT TATTTGTAAAAATCTGACAAAAAGATAAGTTTTTATTTAGCAAATTGATTTTCATTATTAGTATGGAAGGTTTGAAGAGA GCGCTTTATGAATTTACTGTCACTGTTAGACTGTGAGTAGTTTTTGTTTTGTTTTGATATTTATTTAAAATAACCATACA CCGTGATTTATTATGATTTCATAGTCTTTGTCTGTAAATCCGATATTTATTGCTTGATTTTATTGAAACCTTGGTTTTCC ATATAGTTATTGATGTTGTATTTTTCTTGGGTTCTTCTATTGATTTCGTTTTATTAATGTTTTGACTTGCCTTGAGTATG TGATCTAACTTTCTTTTTTCTGAATTTGAATTGTAGACATCAGCCTTCCAGCATCCAGCTGTCCAGATATTGAAGCTCCT ATTTGTTGGCTTGGTATCCCGGAGGTTTTGCTGGAGTAGATTCCAAGGTGAAGGAGTCACGTTAAAGTTCCTTTCATGTT TGAACAGGCTACTATCCATTCGGGAGCAATTGAGCTGCTTGGAGAGTATTTTTCTTCTTCTAGAAAAAATTACAGACCCT TTCTGCAGCGGTTTATCTGCATGCATCGTGAGACATACCAAAAGTTCACCGAGCTGTCTGGTTACTGTTGGCCACCTTCC ATAATTCTAGGAGATTTTTCAAGGGCGCAAGCTACCTTAGAGTCCAATATTGAAGCTGCTATTGTCTGAAAGCGTCCGAA GATCTCTGAAATTTGTAAGCAATCATGGCCTTGCAGAATATTGGTGCTGCAAACAGTGATGATGCCTTCTATAGGTATAA GATGCCTAGAATGATTACAAAAATTGAGGGTAGAGGTAATGGCATCAAAACAAATGTTGTCAACATGGTTGATATAGCAA AGGCATTGGCCAGGCCAGCGGCTTACACGACGAAGTATTTCGGTTGTGAACTTGGGGCTCAGTCGAAATTTGATGAGAAG ACTGGAACTTCTCATGTCAATGGTGCACATGATACTGCAAAGCTTGCTGGTCTTCTTGAGAACTTCATTAAGAAATATGT CCAATGCTATGGCTGTGGAAATCCTGAGACCGAGATATTGATTACTAAGAATCAAATGATCCAGCTGAAATGCGCTGCTT GTGGTTTTTTGTCGGATGTGGATATGAGAGACAAGTTAACCACCTTCATTGTTAAGAACCCTCCAGAAAATAAGAAGGGA TCCAAAGACAAGAAGGCCATGAGAAGAGCTGAGAAGGAGAGACTGAAGCAAGGTGAAGCTGCTGACGAGGAACTGAAAAA AGTGAAGAAAGAGGTTAAGAAGAAAGTCTCTTCAAAGGATGGACCCACAAAATCTACCTCTTCAAAGAAGAAAGCAAATA GCTCTGATGAAGAGCGTACTTCACCTACACACAGTCATATTGATGAGGAAGAGGAGGCTCATGATGAAGATGATGATGAT GTGCAATGGCTAGCTGATACATCTGCAGAGGCTGCTCGGCAACGTATCCAAGAGCAGTTAAGTGCTGTGACAGCTGATAT GGTCATGCTCTCCACAAATGAAACAGAGGAGAAGAAAAAAGCAGGAAGCAAGGCAGATAATGGTTCTGAGAATGGAAACA AGGCACATAATGGTTCTGAGAATGGAAACTCAACCAACTACACAACACTGGTTGGTGAAGTGAAAGCTTATTTGAAGAAA GGTGTTTCAGCAAAGGAATTACTGTCTCATTTGGCAACGATTTCTGTATCTGCTCAGGAAAAGATGAGTGCTTTGTTTGA AGCCCTTTTTGATGGAATTGAGAAAGGTTTTGCAAAAGAAACTATCAAGAGGAAGAGCTACCTTGCTGCTGCGGTTGCTG AGGAAGAGGGATCCCAGTTGTTACTGCTTCATGCTATCGAGGAATTTTCTTGCAAGTCTGCTTCCAGTGCTCTGAAGGAG GTTGCCCTGATTCTGAAAACACTCTATGATGCTGATGTGTTGGATGAAGACAATATCGTGCAGTGGTATCAAAAAGGGCT GAAAGGTGATGACAAGAACTCTGTGATTTGGAAGAATGTTAAGCCCTTCATCGAGTGGCTTCAGACTGCGGAATCAGAGA CTGAGGAAGAATGATGTTTTTGCTCAGGTCATCATTTACTGGAAGAAATCTTATTTTACTGTTGTTGTCTGTTTGCTTGT GTTATGTTCTTCTTTTCAAATAAAGGGTCTTGTTGGCCCCTGATCTGTTGAACTATTAGTCTTTAAACTTTTGTGTCAGT CAGTTTTATTTGTTGTGGTTCTAGTACACATTTTATTTCGTGATGGATAATGATGTGTTACAAAACACACCTTTATATTA TGATGCTGTTTTTCTTTTGTCTTGCTAATTGTGTGTCTAACATGTGTTGTTTCCAACATGTGTGCCCTCTAGCTAAATGA GGTCTTCTTTCTTTTTCTCTGTTATGATAATCAATGGAGTAGCTGAGTTTGGTTGATTGGGTGCAATTCTAATTCACATG CTACTGTGGCTTCATCCTTTTATTTCCATTATCTGGGAGGTTGGATCTGTGTGTAATCATGTTAGACACCATTTGTGTGT AATCGTGTTGGCTTCACCATTTTTTTGTTATGAGAAGTTCATTTAGGAAATTTTTTGAAGTTTCAATTAGTGTTTTGTAT ATATAGTAATGTAAAGTGATTTTATTCTGAAATTTAGTATAATATGACGTTTTGTCAAAAAGAAAAAAACTTCAAGGTGA GTTATTCATATTATCGTCATCTACTTGCAAATGGGCAAAAAACTTAGATACAATATGTTGGCCAATTATAATATAACACT TGTAATATCAAACCACATCCAGTGATAATTAAAAAAAAATGCACGCCTTTAAGTCTCTCACATCTCCAACTGCAAAGAAT TAACTTCCATGGAAGTGGGTATAGAGCTCTGCGATGCAGGTCTTGATATGCGCAGCATTTCTGGTTTGAATCTGTAATCA CATCTTTCCAATCTCCTTTCCATCAGATTGAATTTGTCATTGAGTTTATTGACTCCCTGTCCTCAAAGTCGG
CDS sequence (LotjaGi1g1v0544800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTTGCAGAATATTGGTGCTGCAAACAGTGATGATGCCTTCTATAGGTATAAGATGCCTAGAATGATTACAAAAAT TGAGGGTAGAGGTAATGGCATCAAAACAAATGTTGTCAACATGGTTGATATAGCAAAGGCATTGGCCAGGCCAGCGGCTT ACACGACGAAGTATTTCGGTTGTGAACTTGGGGCTCAGTCGAAATTTGATGAGAAGACTGGAACTTCTCATGTCAATGGT GCACATGATACTGCAAAGCTTGCTGGTCTTCTTGAGAACTTCATTAAGAAATATGTCCAATGCTATGGCTGTGGAAATCC TGAGACCGAGATATTGATTACTAAGAATCAAATGATCCAGCTGAAATGCGCTGCTTGTGGTTTTTTGTCGGATGTGGATA TGAGAGACAAGTTAACCACCTTCATTGTTAAGAACCCTCCAGAAAATAAGAAGGGATCCAAAGACAAGAAGGCCATGAGA AGAGCTGAGAAGGAGAGACTGAAGCAAGGTGAAGCTGCTGACGAGGAACTGAAAAAAGTGAAGAAAGAGGTTAAGAAGAA AGTCTCTTCAAAGGATGGACCCACAAAATCTACCTCTTCAAAGAAGAAAGCAAATAGCTCTGATGAAGAGCGTACTTCAC CTACACACAGTCATATTGATGAGGAAGAGGAGGCTCATGATGAAGATGATGATGATGTGCAATGGCTAGCTGATACATCT GCAGAGGCTGCTCGGCAACGTATCCAAGAGCAGTTAAGTGCTGTGACAGCTGATATGGTCATGCTCTCCACAAATGAAAC AGAGGAGAAGAAAAAAGCAGGAAGCAAGGCAGATAATGGTTCTGAGAATGGAAACAAGGCACATAATGGTTCTGAGAATG GAAACTCAACCAACTACACAACACTGGTTGGTGAAGTGAAAGCTTATTTGAAGAAAGGTGTTTCAGCAAAGGAATTACTG TCTCATTTGGCAACGATTTCTGTATCTGCTCAGGAAAAGATGAGTGCTTTGTTTGAAGCCCTTTTTGATGGAATTGAGAA AGGTTTTGCAAAAGAAACTATCAAGAGGAAGAGCTACCTTGCTGCTGCGGTTGCTGAGGAAGAGGGATCCCAGTTGTTAC TGCTTCATGCTATCGAGGAATTTTCTTGCAAGTCTGCTTCCAGTGCTCTGAAGGAGGTTGCCCTGATTCTGAAAACACTC TATGATGCTGATGTGTTGGATGAAGACAATATCGTGCAGTGGTATCAAAAAGGGCTGAAAGGTGATGACAAGAACTCTGT GATTTGGAAGAATGTTAAGCCCTTCATCGAGTGGCTTCAGACTGCGGAATCAGAGACTGAGGAAGAATGA
Protein sequence (LotjaGi1g1v0544800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALQNIGAANSDDAFYRYKMPRMITKIEGRGNGIKTNVVNMVDIAKALARPAAYTTKYFGCELGAQSKFDEKTGTSHVNG AHDTAKLAGLLENFIKKYVQCYGCGNPETEILITKNQMIQLKCAACGFLSDVDMRDKLTTFIVKNPPENKKGSKDKKAMR RAEKERLKQGEAADEELKKVKKEVKKKVSSKDGPTKSTSSKKKANSSDEERTSPTHSHIDEEEEAHDEDDDDVQWLADTS AEAARQRIQEQLSAVTADMVMLSTNETEEKKKAGSKADNGSENGNKAHNGSENGNSTNYTTLVGEVKAYLKKGVSAKELL SHLATISVSAQEKMSALFEALFDGIEKGFAKETIKRKSYLAAAVAEEEGSQLLLLHAIEEFSCKSASSALKEVALILKTL YDADVLDEDNIVQWYQKGLKGDDKNSVIWKNVKPFIEWLQTAESETEEE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 449 | 449 | 1.2E-247 | – | |
| PANTHER | 1 | 449 | 449 | 1.2E-247 | – | |
| SUPERFAMILY | 11 | 101 | 91 | 2.75E-21 | ||
| Pfam | 11 | 127 | 117 | 8.2E-37 | ||
| SMART | 15 | 129 | 115 | 1.8E-63 | ||
| Gene3D | 24 | 99 | 76 | 2.4E-30 | – | |
| SUPERFAMILY | 98 | 133 | 36 | 1.7E-7 | ||
| Gene3D | 101 | 145 | 45 | 4.7E-17 | – | |
| MobiDBLite | 143 | 232 | 90 | - | – | |
| MobiDBLite | 148 | 222 | 75 | - | – | |
| MobiDBLite | 265 | 298 | 34 | - | – | |
| MobiDBLite | 278 | 298 | 21 | - | – | |
| ProSiteProfiles | 289 | 449 | 161 | 25.839 | ||
| Gene3D | 293 | 449 | 157 | 2.8E-31 | ||
| SUPERFAMILY | 296 | 443 | 148 | 1.44E-25 | ||
| CDD | 302 | 447 | 146 | 9.74276E-38 | – | |
| SMART | 357 | 445 | 89 | 3.0E-32 | ||
| Pfam | 371 | 449 | 79 | 3.5E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation initiation factor activity | Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Translational initiation | The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. |
Expression pattern of LotjaGi1g1v0544800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…