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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0547000 |
| Transcript ID | LotjaGi1g1v0547000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Importin-like protein; TAIR: AT3G59020.1 ARM repeat superfamily protein; Swiss-Prot: sp|F4J738|SAD2H_ARATH Importin beta-like SAD2 homolog; TrEMBL-Plants: tr|V7B088|V7B088_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0547000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:107670956..107675678) extracted from Lotus japonicus Gifu genome v1.2.
AAAATATTTTATGTTAAAACAATCACGGTGCTTCCTTCTTCTTCACCACCGCGGGAAGGAGAGCTCCGCCGCTTGCCACC ACCATATTTGGTAAGCTCTCAACCTCTCATTGCTCCTTCTTAGTCCAGATGATACATGCATGAAGCTTTTGCAGAGTTAG CTTACCACCGTTCTCGTCGCTAGTTTTGGCGCCATGGATCTTCAAAGTCTCGCTGGTATACTCCATGCTGCTCTCAGCCC CAACCCCCATGAACGGAAGGAAGCTCTGCACAGCTTGGATCAGGTGCGACTCTCTTTCATGTTGCCAGTGAATTTTGGTT ACATAGGGAGTGAATTTTGGTGTAAGAAACCAATTATCGATCAAGTTTTTGGGATAACTGGTTGTTTGACATGGTATCAG AGCCTCTATGACTAAGGGATCCAGAGTTTGATCATTGCCGCCCCCATGATCTGATAAAAAAAAGTGGAATTTTAAGCGCA TGGTAGGTGGCATGTGCATTATCCACGCTTCATACCCAAAATGGGCTCTTACGTGAGGGAGCGTGTTAGAATAATAATAT AAAACCATTCATGTGGTCCTTACCAAACAGCTTAAGCTTTTGGACAATTTGTTACTCGACATAAGCTCCCATATTTGGGA GGTCTCCACAACAAATTGGTCTAGGATAGGCTCTCATACCAGACCAATTACCCTAAAATTTTAAGCTTTTGGGATAATTC GTGGCTTGACATTTGGTGTATTGAATGTTTGGTTGTCCATTTATGGGTTTAGGGTTGTCCATTTATGGGTGCCAGTGTGC TGTTAATCGCGGAAAATAATAGAAAGCAAAAAATCCGCTATTTCAAGCCCTCAAAGCCGCAAATATCGTAGTGGGTGTGA GCCTCATAGGTCATAGCGCTACACAATAGTGCTATAGCGTTGCTATAACCTCTATTTGACAACACTGATGGGTGCTAAGT GAATGTAGTAGGGTTTCAATTTCAATATGATGAATTTCTTTTTAATTTTTTATTATTGTATATTTGTATATACAGCTTCA GTATGCACCTCAGCATCTGGTGAGGCTGATGCAAATCATTGTAGACAACAACTGTGACATGGGTGTACGACACGTTGCTA GCATTCATTTCAAGAACTTTATTGTGAAGAATTGGTCTCCTATTTATGGGTCTGGTATATCCCTTTATCCGAGGTGGTGA TTAGATAATCAATTCCTATGTTTGCTGATGATGCATGCTCTTTTTTCTGTGTTGAATATGTAGATGTCCAACATAGGATG TTGCAGAGTGATGAAGACATGGTGAGGGATAACATTCTCATATTTATCACCCAAGTTCCTCCTTTATTGAGGATACAACT TGGGGAATGCCTAAAAACAATCATAAATTCTGATTATCCTGTAAAGTGGCCTCATCCTCTTGAATGGGTGAAGCATAACT TACGGTGTGAAGAAGAAGTATATTGTGCCTTATTTGTGCTGCAGATTCTCTCTAAAAGATTCATGTTAATTTCAACTAAG AAGGGGGCACCTGGTTATCACATTGTTGAGGAAACATTTCCCCACCTTCGATATATATTTAACAGGCTTGTCCAAATTGT TAATCCATCACTTGAAGCAGCAGATTTAATCAAGTTTATCTGCAAAATATTCTGGTACTCCATACATGTAGACATTCCGC AACATTTGTTTGATCAAGACATCTTCGATGTTTGGATGGTATCTTTCCTGAATTTACTAGAGAGGCCTGTACCCTCAGAG GGCCAGCCTGTTGATCCTGAGCTTAGAAAATCTTGGGGTTGGTGGAAGGTAAAGAAATGGATAGCTAACATTCTAAATAG GCTCTTCACTCGTTTTGGTCAGTTCGAGATGGTGTTTTCTCAACGCACAGTCTTCACAATGTTTCATAAGCATTATGCAG GGAAGATCTTAGAGTGCCACTTAAATTTGTTAAATGTCGTTCGTTTTGGGGATTATTTACCTGACAGAGTTATCAACTTG ATTCTTCAATATCTAACCATCAGTATTTCAAGGAGAAGTTTGTATGCTCTAATTCAACCTCGGCTTGATGTCCTACTTTT TGAGATAATTTTTCCATTAATTTGCTTCAACGATAATGATCAAAAGCTTTGGGATGAAGATCCACAGGAATATGCAAGGA AAGGCTATGACATATTTGAAGATATGCATAGCCCTAGTACTGCTGCAATGGATTTTGTGAGTGAGTTGGTCCGAAAACGT GGGAAAGAAAATCTTCAAAAGTGTATTCAATTCATAGTTGAAACTTTCAAAAGGTATGATGAAGCTTCTATAGAATATAA GCCCTATAGACAGAAAGATGGTGCTCTTCGTGTTTTTGGGACACTTCATGACAAATTCAAGGAGATCGAGCCATACAAAT CTGAACTTGAGCACATGTTAGTGCATCATGTCTTTCCTGAGTTAAACAGTCCTGTTGGCCACCTTCGAGCTAAGGCGGCA TGGGTTGCAGGACAATATGCCCATATTAGCTTCTCATATCAGAACAATTTCCAGAGGGCATTGCAGTGTATTGTGTTAAG ATTACAGGATTCTGAACTTCCTGTGCGCGTTGATTCTTTTGTTGCTTTGCGTTCTTTCATTGAAGCATGTAAAGATATGA ATGAAATCTTTCCCATTCTTCCTCGACTCCTTGATGAGTTTTCCAAACTTATGAACGAGGTTGAGAATGAGGCCCTTGTG TTTACTTTGGAGACAATGTTGGACAAGTTTGGGGAAGATTTTACGCTTGCACTGTACTATAATTTGGCAGGTGTGTTTTG GAGACGTATGAACACTATAAAAGATGATGATGAAGCTAGTCGTAATCGAGCCACAGGAAGCGGCTGCTTACGTGCGATTA GCATAATCCTTGAATCAGTGAGCTGCCTTCCTGACCTTTTTGTTCAAATTGAGCCAACTTTTGTTCTGATAATGCGAAGA ATGTTAACAAACAATGATCAAGAGTCATTTAAAAAAGTTTTGGAGATTTTGTCACATGTAACTTGCTTCTCTCGAACAAT ATCACCAGATATGTGGAGTCTTTGGCCATTGATGATGGAAGCACTGACAGATTGGGCTACCAATTTCTTTCCAAATGCTT TAGTTCCTATTAACCACTACATTTCAAAGGGAACTGCTCATTTCCTTACTTGCAAAGAACCCGACTATCAACAGAGTCTG GGGAACGTGATTTTATCCGTGAGTTACTTATACATTATTACCTCGACGATTAACTGTTGGAACTTGGTGATTGATAGTAT ATAACCATATATATTTCTTCTTCTTCTTATTACTATTATTTTATATGATATTTCTGGTGTTTTTGTGGTTTGTATATAAT ATTACAGGTAATGTCAGATAAAAATATGGAGGATAATAATATTGTGACAGCCTTAAAGCTTATTGAAGTTGTCTTACAGA ATTGCAGAGGACAAGTGGATCATTGGGTCTCTCCTTTTATTAGCATTACGGTTGAACGCTTGCGTCAAACTGACAAATCC TATTTGGAATGTCATTTCATACAAATGGTAATAAATGGGTTTGTTACAATCAAGAATAACATAAATGGATGAATTTATCA TGAAATTGGCTTGCTTTGCTTCTTGGTTAGTACTAATAGGTGACAATTATCTCAGATTGCAGATGCTCTTTATTACAATG CAACCCTTACTATCAGCATATTGAAAAAGTTAGGTGTTGTCTCAGAAATCTTCCATCTCTGGTTTGATTTGCTGAGCCAA GTCCAGAAAAATGGTAGTCGTGCTAATTTCAGAAAGTCTGTTCATTTTCCCTCTCTGTAACCATTCCTCCTTCGTGCATT ACTTTATTTCTCTGTACCCCTTCTGCTTCCAATAAAACAGTGCCTGTTATTGCGTGTGAAAATTTGAAGGTCTTCTTAAC TTTATGCAGGAAACATGAGAGGAAAGTTTGCTGCCTTGGTTTAACATCATTACTTACAGTCCCAGCTGATCAATTGCAAG AGTTGGCTTTAGGCGACATGCTCTGCGCCACTCTTGATGCTCTACATGTCTACAAGGATCAAATTAACGGTATGTATGTT TGTCCTGTTACATACAGGCATGCCAAATTTAGTCTTGGTTTGTGAGTGCTTAATTAGTTTTCAGTTTGTTCTACTCGCTG TGCAGGAACTTTAAGAGATAAAAAATACTACGAAGATGAAGATGGCGGTGATGGTTTATATGCCTCTGATGATGAGATGT ACTATGGTTTTCCCAATGATGGGTATCAAGCTAATGCTATCACACTTGGAAAGTGTTTTGCACGGGCAACAAAGCCATTC AACCCCCACGGCGGTGGTGATTCAGGTGATGAATATAGTGATGATGATGAAGAGTTGCAGTCCCCAGTTCAAGAGGTGAA TCCTTTAGTTTTCTTTGTGGACACGCTCAAAGCGATGCAGTCATTAGATCCATCAGGGTTCAAGAATCTCCACCAAACAC TTGATCCTGTTTATCAACACATTGCTAGAAATATAGCTAGAAGTGCAGAAGAGATTGAGAATGAAAAATTAGAGAAGGCA ATTATCAATATGTCGCTACAAGAATAGCTAGAAGAGCAGAGACTGAAAAGGAAAAATTATACAAGATAACCGTTGCCACA ATTGGATGTACATAAACTAATGTGGGTATGATTTAAGTGATGAAAATATTTGGTCAATTCGAATTATGTTATATTATATA TTT
CDS sequence (LotjaGi1g1v0547000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCTTCAAAGTCTCGCTGGTATACTCCATGCTGCTCTCAGCCCCAACCCCCATGAACGGAAGGAAGCTCTGCACAG CTTGGATCAGCTTCAGTATGCACCTCAGCATCTGGTGAGGCTGATGCAAATCATTGTAGACAACAACTGTGACATGGGTG TACGACACGTTGCTAGCATTCATTTCAAGAACTTTATTGTGAAGAATTGGTCTCCTATTTATGGGTCTGATGTCCAACAT AGGATGTTGCAGAGTGATGAAGACATGGTGAGGGATAACATTCTCATATTTATCACCCAAGTTCCTCCTTTATTGAGGAT ACAACTTGGGGAATGCCTAAAAACAATCATAAATTCTGATTATCCTGTAAAGTGGCCTCATCCTCTTGAATGGGTGAAGC ATAACTTACGGTGTGAAGAAGAAGTATATTGTGCCTTATTTGTGCTGCAGATTCTCTCTAAAAGATTCATGTTAATTTCA ACTAAGAAGGGGGCACCTGGTTATCACATTGTTGAGGAAACATTTCCCCACCTTCGATATATATTTAACAGGCTTGTCCA AATTGTTAATCCATCACTTGAAGCAGCAGATTTAATCAAGTTTATCTGCAAAATATTCTGGTACTCCATACATGTAGACA TTCCGCAACATTTGTTTGATCAAGACATCTTCGATGTTTGGATGGTATCTTTCCTGAATTTACTAGAGAGGCCTGTACCC TCAGAGGGCCAGCCTGTTGATCCTGAGCTTAGAAAATCTTGGGGTTGGTGGAAGGTAAAGAAATGGATAGCTAACATTCT AAATAGGCTCTTCACTCGTTTTGGTCAGTTCGAGATGGTGTTTTCTCAACGCACAGTCTTCACAATGTTTCATAAGCATT ATGCAGGGAAGATCTTAGAGTGCCACTTAAATTTGTTAAATGTCGTTCGTTTTGGGGATTATTTACCTGACAGAGTTATC AACTTGATTCTTCAATATCTAACCATCAGTATTTCAAGGAGAAGTTTGTATGCTCTAATTCAACCTCGGCTTGATGTCCT ACTTTTTGAGATAATTTTTCCATTAATTTGCTTCAACGATAATGATCAAAAGCTTTGGGATGAAGATCCACAGGAATATG CAAGGAAAGGCTATGACATATTTGAAGATATGCATAGCCCTAGTACTGCTGCAATGGATTTTGTGAGTGAGTTGGTCCGA AAACGTGGGAAAGAAAATCTTCAAAAGTGTATTCAATTCATAGTTGAAACTTTCAAAAGGTATGATGAAGCTTCTATAGA ATATAAGCCCTATAGACAGAAAGATGGTGCTCTTCGTGTTTTTGGGACACTTCATGACAAATTCAAGGAGATCGAGCCAT ACAAATCTGAACTTGAGCACATGTTAGTGCATCATGTCTTTCCTGAGTTAAACAGTCCTGTTGGCCACCTTCGAGCTAAG GCGGCATGGGTTGCAGGACAATATGCCCATATTAGCTTCTCATATCAGAACAATTTCCAGAGGGCATTGCAGTGTATTGT GTTAAGATTACAGGATTCTGAACTTCCTGTGCGCGTTGATTCTTTTGTTGCTTTGCGTTCTTTCATTGAAGCATGTAAAG ATATGAATGAAATCTTTCCCATTCTTCCTCGACTCCTTGATGAGTTTTCCAAACTTATGAACGAGGTTGAGAATGAGGCC CTTGTGTTTACTTTGGAGACAATGTTGGACAAGTTTGGGGAAGATTTTACGCTTGCACTGTACTATAATTTGGCAGGTGT GTTTTGGAGACGTATGAACACTATAAAAGATGATGATGAAGCTAGTCGTAATCGAGCCACAGGAAGCGGCTGCTTACGTG CGATTAGCATAATCCTTGAATCAGTGAGCTGCCTTCCTGACCTTTTTGTTCAAATTGAGCCAACTTTTGTTCTGATAATG CGAAGAATGTTAACAAACAATGATCAAGAGTCATTTAAAAAAGTTTTGGAGATTTTGTCACATGTAACTTGCTTCTCTCG AACAATATCACCAGATATGTGGAGTCTTTGGCCATTGATGATGGAAGCACTGACAGATTGGGCTACCAATTTCTTTCCAA ATGCTTTAGTTCCTATTAACCACTACATTTCAAAGGGAACTGCTCATTTCCTTACTTGCAAAGAACCCGACTATCAACAG AGTCTGGGGAACGTGATTTTATCCGTAATGTCAGATAAAAATATGGAGGATAATAATATTGTGACAGCCTTAAAGCTTAT TGAAGTTGTCTTACAGAATTGCAGAGGACAAGTGGATCATTGGGTCTCTCCTTTTATTAGCATTACGGTTGAACGCTTGC GTCAAACTGACAAATCCTATTTGGAATGTCATTTCATACAAATGATTGCAGATGCTCTTTATTACAATGCAACCCTTACT ATCAGCATATTGAAAAAGTTAGGTGTTGTCTCAGAAATCTTCCATCTCTGGTTTGATTTGCTGAGCCAAGTCCAGAAAAA TGGAAACATGAGAGGAAAGTTTGCTGCCTTGGTTTAA
Protein sequence (LotjaGi1g1v0547000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLQSLAGILHAALSPNPHERKEALHSLDQLQYAPQHLVRLMQIIVDNNCDMGVRHVASIHFKNFIVKNWSPIYGSDVQH RMLQSDEDMVRDNILIFITQVPPLLRIQLGECLKTIINSDYPVKWPHPLEWVKHNLRCEEEVYCALFVLQILSKRFMLIS TKKGAPGYHIVEETFPHLRYIFNRLVQIVNPSLEAADLIKFICKIFWYSIHVDIPQHLFDQDIFDVWMVSFLNLLERPVP SEGQPVDPELRKSWGWWKVKKWIANILNRLFTRFGQFEMVFSQRTVFTMFHKHYAGKILECHLNLLNVVRFGDYLPDRVI NLILQYLTISISRRSLYALIQPRLDVLLFEIIFPLICFNDNDQKLWDEDPQEYARKGYDIFEDMHSPSTAAMDFVSELVR KRGKENLQKCIQFIVETFKRYDEASIEYKPYRQKDGALRVFGTLHDKFKEIEPYKSELEHMLVHHVFPELNSPVGHLRAK AAWVAGQYAHISFSYQNNFQRALQCIVLRLQDSELPVRVDSFVALRSFIEACKDMNEIFPILPRLLDEFSKLMNEVENEA LVFTLETMLDKFGEDFTLALYYNLAGVFWRRMNTIKDDDEASRNRATGSGCLRAISIILESVSCLPDLFVQIEPTFVLIM RRMLTNNDQESFKKVLEILSHVTCFSRTISPDMWSLWPLMMEALTDWATNFFPNALVPINHYISKGTAHFLTCKEPDYQQ SLGNVILSVMSDKNMEDNNIVTALKLIEVVLQNCRGQVDHWVSPFISITVERLRQTDKSYLECHFIQMIADALYYNATLT ISILKKLGVVSEIFHLWFDLLSQVQKNGNMRGKFAALV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 835 | 835 | 5.5E-162 | ||
| SUPERFAMILY | 2 | 828 | 827 | 1.79E-104 | ||
| PANTHER | 3 | 829 | 827 | 0.0 | – | |
| PANTHER | 3 | 829 | 827 | 0.0 | – | |
| ProSiteProfiles | 24 | 100 | 77 | 15.999 | ||
| SMART | 24 | 100 | 77 | 6.7E-5 | ||
| Pfam | 27 | 99 | 73 | 3.5E-13 | ||
| Pfam | 199 | 444 | 246 | 6.4E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. | ||
| Molecular function | Ran GTPase binding | Interacting selectively and non-covalently with Ran, a conserved Ras-like GTP-binding protein, implicated in nucleocytoplasmic transport, cell cycle progression, spindle assembly, nuclear organization and nuclear envelope (NE) assembly. |
Expression pattern of LotjaGi1g1v0547000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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