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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0553900 |
| Transcript ID | LotjaGi1g1v0553900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | High mobility group family protein; TAIR: AT1G04880.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9MAT6|HMG15_ARATH High mobility group B protein 15; TrEMBL-Plants: tr|G7KWP7|G7KWP7_MEDTR High mobility group B-like protein; Found in the gene: LotjaGi1g1v0553900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:108585696..108592126) extracted from Lotus japonicus Gifu genome v1.2.
GATGATATTAAGGAATCTATTATAATTCAAACTTCCTCAGTCTCTCTTCTAATTAAGGCCATAAGTACCCCCCTTGATTT TCTAACTTATTGTAGACTTTAAAACTATATATTTCATTAGCTTAAGTTTCTTCATCATCATTCATTCCAATAAACAAAAT ATACAGAGTTTATTCTTAACCTTCTTCCTTAATGTCATTTGCATTATAGACCAATCCATTCACCATTCTCAGTTTACTCT TGGTAAGTCTATTTTCCCCCTCTTCCATTATTATATCAATCATTTTACCTCATTCACAAAACTAAAACTGTATCTTTAAC ATTCACATTCAACCTCTTTATGTAATGTTTCCCTGGGTTTGTTTATTTGTTGCTATATTCCTTTAAAAACAATGTCACAT CATTTTTTAAAAATTAATGAACATTGTAAATTTTTATGGTAGATAATAATATATTTCCATTATCATCTCTTCTCTATTGC ACTTTCCCTCTGAGTGCAGCAACAAATATTGGAGAAAAGAGAACAAGTTTCAGTTTCCTTGAACAGTGACAACTAAGAGA GAAACATGAAATTTTTATGGATATTATGCGTATTTATGTAAAGGTAAAAGATTTAGTATTCATGTAAGGTGATGTGGAAT ATCAATATCATGCTATGAATACAATATGAATGTCATGTCAGAAAGGACCTTTCAGCAATAGCCTCTACATAGGTCGATGA AGGGTCTTATGTTCATTTTTATTACCAATGCCTAAGAGGGTACCTGTGTTTTCACCCCTTTGTTTGGAAAGGCCTAAACT TTAATGGCTTCTTCTTCCTGTTACATTATAATAATTGTGGATTGTTTCAGTCCTCAACCTGCTTCTGCATGGTGATTTTA ATGTTTTTTTTTGGAACATGTTCTCTCTTCTTGTCGGTGAAATTGTATATTTCTTTCCATTTTTTTAGGTGAGTGCTGAT TAGTAGCACTGAACATTGCAGCATCTGTGCTTGTTTTCTTCTTTGTTTTTGTTTTTTTGTCTGAGTCATTTACTCCTTCA CACGTCATGCATTGTTTCTAAACATCAAGGTTGTTCTTGTTGTTGAAGGATAAATGGTATCAACATCTTGTGTTAGCAAT AGTCCATTTCCGATGAAAGAGGCAGCTCCGATCTCTCATTCGTATCCGGTACCTCTTGCAAAGTATGAGGAGGTTGTGGC AAATCCCAAGCTCTTCATATTTACCTTGGAGAAGCTACATGCTTCCATGGGTACCAAATTCATGTAAGTCATTTTCTTTT TTTTTTCCCTCAAAGTTACTCTTAGCACATTTGGGTCAACTTCATTTTAATCAGAATAAATTCTGAAACGCAGAACCTAC TCATAGAAGCTTCTCCCCATAATTCATTCTTGCTTCAGAATCAATTGTAGAACAGTTTGCAAACATGCACTCTTTTGAGT TTGAGTTTCTCTGAAGTCTATTTGAGAGTTTATTTATGCTGTTACTCTGCCATTGTAGGTTCAGTTCACTATTTTTTCTT AGGAAAAAAAATGGGGTGGGGTTTTCTCAGTTTCATGTTTTCCCTGAGATTTATGATAATGCTATTCTTTTTTTGTTTTT TTTTTTGGTGGAGCTTTTTGAGATTCTATTCCATTGTCGAAGATTTGAAAACCTTTCTGCGCTACTGACTGACATTTTGT TTCAGGATTCCTATTATTGGTGGAAAAGAACTAGATCTGTGTCGCCTCTTCATTGAAGTGACTTCTCGTGGAGGGTTTGA GAAGGTGAGATGTGAATATTTAAAATTTGGCTTTCTGCTGTTGTCTTTACTAACTAATGTGTTCAATTGTTGAATGTTCT GTACTACTGTGTGTGATTTTTTTCTTTCTAAATCTCTTTCTATTTTGAATTCAAGATCAACATTTCTTCCTTTAAAGTAT ATGGCAATATGCTGAGCTAGAAATCATGGATTGTGTCCAAGTATGGACACATTAGGTGGTTTTGCTAATTGCTTGATTTT CAGACAGAACAACTTTTTAGCCAAAAGTTCTAACTGTGGCATTTTGATAACAAATTTTCTTAACACATATAAGCTCAAAG ACATTCTATCTATCCTCAGCTGGATTGAAATTTGGAATCTGCGTTGATAGTTCAATTAAGATATTCTGTTTGTGCTTGTC TGCATTTTAGCATAGTAATTTAGGAATATATGCTAAATTTATGTGGTTTTGCTGGTTAGTAGACATTTTTTTTCTGATAT AAACATCTTCATTTCTTCTGTTGATGGACAAACAAGTGTACTATAAAGTTCTCATTAATTCAATTCAGTGGTTATCAAAA GTTTGTTTGAGGGATAATTAATTCTTGAATAAGCATTTATATAGCTGACCACAAGCAATTGTTGGCATTTTGAGAAATAT GGTTGGAGTGAGGTATGCTCTCAGGAGAGTTGATTGGGAGAGATTATTCTTTTGCAGCTGATCACAAAAAGTTTTGACTG ATTAATATGTTATGGTGTTGGTTGTAGTTAGACTAATAGCATGTTTGGATCAACTTATTTTTCTTATTGATAGCTAGAAG CTGCTCATAGAAGATTCTCCCCATAATTGATTACGGCTTTAGAATCAATTGTATAAATATTTCCAAACATGTCTTAAGTT TTTTGGCCACAAACAAAGGAGGTTGTTGTTGGCTGCATATGTATAGAAACTGGAATCCACTCACAGTAAAGCTGGCCACA ACAGACATATTTTACTGTTAAGGAAGGTTTCCTTTTAGTTTTTCCTCATATTGATGTTTATAGAGGGAGACAACTTTTCT AAACAGTCTGTCCTTTTCATCTTAATTGGGGCTGGTGAAATACAGAAGGTTGTATGAATGAATGAGAATTGGAATTCAAA TCACACTCTCCCTCTTTCATGCTTTGCCATTTAGATAGTTTTATTTTTTTCACATCACACTCTTTGTCCTTCTATCTGAT GTACCATGTTTTGGTGCCTTGTTTGTGAGATGAGCAGTGCTGGTTGCTCACCAGGACTTTTTTGTTATGTGGGTGTAGTG TTTAAAAGCAGTGTTTAACAGGTTTTGTGTATGTTGATTTGGTTCTGGTGTGGTTGTTATAACTTATAATAGCACTCTAA TATGTCTTGCAGCTTATAAAAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTCAATTTTCCATCAACAGCCACAAATGC TTCTTTCGTGCTGCGGAAGTACTATGCTTCATTGCTTTACCACTATGAACAAATCTACTTTTTTAAAGCCAATCGATGGA TCCCTCCAACTTCTGGTCCGTGCTTCTTCTATATGAAATTGCTTGTTTGAACATGAACTATTTCCACGGTATGTTTCTTA TGAATAAAATGGAAAATGCACTTTTTGTCAGGTGCTCTGCAGAGTCACGCAGCCCCGCCAGTTCCTGCTCGAACGACACA ATTTTTGCAGCCTTCTCCAGCAATTCAACCAGTTGTCTTTCATCAGTCAAGTGCTAATGCTGCTGAATTTTCTAAAGGTC ATTTTTCAACTCAAAATACAATTGATACCACAAATAAAGGAAAGGGGAAAACTGGAGTATATATGATCGAATAATGATTC ATAGACATTGATACGGTAAAAACACCTTCAAACACCCCTTTTTCCTGCGGATTTGGCCAAATAATACACTGAACTAACCA CCTAAATACACATGACTAACCATAAAGCACATAACCGTGTAAAGTTGAAATTCCTAAATTAGGAATTTGGCCAAATAATA CACTGAACTAACCACCTAAATACACATGACTAACCATAAAGCACATAACCGTATAAAGTTGAAATTCCTAAATTAGGGAT TTGGCCAAATAATACACTGAACTAACCATAACCAGAACCGTATAAAGTTAAAATTCCTAAATTAGGGATTTGGCCAAATA ATACACTGAACTAACCACCTAACCATAAAATATGGTTAGTCATGTGTATTTAGGTGGTTAGTTCAGTATATTATTTGGTC AAATCAGCAGGAAAAAGGGGTGTTTGAAGGTGTTTTTACTGTATCAATGTCTATGAATCATTATTGTATATGATCATAAG AATTTTTAGCCTCAGCTTTTAATCCTCTTAGTCATATTGGAGATTAGGAATTGCTTACGAAAAGGTGGAGTAAACATGAT GACAAAAATATCAATCTAAGACCTTCTCACACACATGCTACCTGCAAAGTTAATTAATCAATCTGGTTAACTAGATTGGG TCTAGTGTCCTATCTTTGGAATGCAAGTGTTGTGTCTCATCTCCATGTGGGCTTGAAGGATAAATGAGAAAGATGAGGAG CATGGTTCCTAGAACCGGTTTTTAAATGATGAAATTGTTGAGCCTGAATAATGGATGACTTACAATCAAAGGTTTGTTTG AGACAGGTTGTAGGGATCCTCACCTGCACATTCTATCTCCACTCCAGCCTCTCAGTTGTTGGATACAACAAGCACACTAA AAATTTATTTATGTATTTATAATACATGTTAGTCAGTTAGTTTCTTTTGATTTTCTCCATTCTGTTAGTAAGTTGTTAGT TAGGTGCAGCATTAGTTTAGCTTTGATAAATGAATCAGACTTAGTGAATGGATCACTTGTCTTTTCTCCCACTAGTATGT ATAGTGGCTATAAATATGAGAACTAGCAGAAAGTAAACTTATATAAAAAGAAGTAATAGAATAAGAAGCATCACAAGCAT GATAGGTTGAAGGTGATTTATCAATTCATATCACTCATTTTCCAAGAATGAGAAAAAAATAGCACAAACCTTAGCTACAA ATTACAATATATTCACTTCAACAAAATAAGCTCTATCCAATAAAAAAGAAGTTAATTGAAAAACTGTTCAACAACTGAGG AACGGTGACAGGTAGCTAACTAACATCCCTTCCCTTCTTAGTTCTTATGCAATCAAAAAGAAGTAATATGTGTCTGACCT TTGATAGATAAGATTCAAATTTAACTTCTCTAAAAGGAAAGTGCATTTAGAGCAGTCATAGACTCATAACAATCAATAGA AAAATGAACTATTAAATATTTCAATAAAACACTTGTAAGAATCTAACACCAGTATCATTGTGTTTTTAGCAGTTAAGCAG TTGAGCGAAAGAATGAACTGTATATGGTGGGTCTTTCTATTTATTTTTCTACAGTATTAATTTATGGCAACTGCGACATA TCCTTCTATGGTGTTACATTTTTGTTTTTGTCTTGGTTTTGTTGATGACAAATGCACTACATAACTTTCTTGAATATATT TCATGGATCAGTTAAATAAGTAGTAGTGGTTGTTGTCAATTGTCTTTGGCAGGATCTTCAGTGGTTGGAGTCATTGATGG GAAATTTGAAAGTGGGTATCTAGTTTCAGTTTCTTTAGGTTCAGATATGGTCAAAGGTGTACTCTATGAATCTCCACAAA CCCCTATGTTGCCTGCATCTGCATCACATCATCAAAGCATTATAGCTAAGAACAACAATACCCCTGCTGTATTGGGTGTC CAGCGTCGCCGTCGCAGGAAGAAATCAGAAATAAAAAGGAGGGATCCTGCTCATCCAAAACCCAACCGAAGCGGCTACAA TTTCTTCTTTGCTGAGCAGCATGCAAGACTAAAACTACTAAACCAAGCCAAGGACAGGGATATTAGCAGGATGATTGGAG AACTATGGAACAAGTTAAAAGAGCCTGAAAGATCAGTAAGCAACTTGTTAAATCTTCATACTTCTTTTAGTATAAAACTA CAAACCATTCTCCATTCATGCTTCAGTTCTTGAGTTTAGTAACATGTTTTGTTTTCACTGATATTAAGGTTTATCAAGAG AAGGCTATTAAGGATAAAGAGAGGTACCAAGCAGAAATGGAGGGTTACCGTGAGAGACTGAAGATGGGCAATGTCATCAG TGATGCTGTGCCACTGCAACAAAGGCTCCCTGAATCAGATGCATCTTTGGTGGATGTGGACATAAAATTGATTGGTTCTC CTCAAACTCCTGTGGAAAGCACTTCTAGTGGAAGTGACTATGAAGATGATGATATCAATATGGGTGCCACCTCTCCTGAA GTAGAAGTGGGTGTTGAAGCTACCTATGTGGGTTCAGACAAGCCATCACAGGATTATGAGCTTCTTCCCCAATGCCAGAG AGAAGGGGATGCTGGAGTTCAGGATGTGCAAACGATGAATGAGAGCAAGACTATGCTAGCATTAATTTAGTGCAGAGAAC AGTTTTTTTCTTTATTCATGTAATAAGACCAGGTAGGATTTATTTCCAGTGTTTAGGTTTGTCACATTTAGTTTTGTCTT TTCAAGATTAATTCAGGAGTTCATATTCTCTGCATTTTAAAGTACACTAGGATTAGGATTGTACCCGTGCAATGCATGAA GAAACGACTCTTTTATTAAAATGAATTTCGT
CDS sequence (LotjaGi1g1v0553900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTATCAACATCTTGTGTTAGCAATAGTCCATTTCCGATGAAAGAGGCAGCTCCGATCTCTCATTCGTATCCGGTACC TCTTGCAAAGTATGAGGAGGTTGTGGCAAATCCCAAGCTCTTCATATTTACCTTGGAGAAGCTACATGCTTCCATGGGTA CCAAATTCATGATTCCTATTATTGGTGGAAAAGAACTAGATCTGTGTCGCCTCTTCATTGAAGTGACTTCTCGTGGAGGG TTTGAGAAGCTTATAAAAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTCAATTTTCCATCAACAGCCACAAATGCTTC TTTCGTGCTGCGGAAGTACTATGCTTCATTGCTTTACCACTATGAACAAATCTACTTTTTTAAAGCCAATCGATGGATCC CTCCAACTTCTGGTGCTCTGCAGAGTCACGCAGCCCCGCCAGTTCCTGCTCGAACGACACAATTTTTGCAGCCTTCTCCA GCAATTCAACCAGTTGTCTTTCATCAGTCAAGTGCTAATGCTGCTGAATTTTCTAAAGGATCTTCAGTGGTTGGAGTCAT TGATGGGAAATTTGAAAGTGGGTATCTAGTTTCAGTTTCTTTAGGTTCAGATATGGTCAAAGGTGTACTCTATGAATCTC CACAAACCCCTATGTTGCCTGCATCTGCATCACATCATCAAAGCATTATAGCTAAGAACAACAATACCCCTGCTGTATTG GGTGTCCAGCGTCGCCGTCGCAGGAAGAAATCAGAAATAAAAAGGAGGGATCCTGCTCATCCAAAACCCAACCGAAGCGG CTACAATTTCTTCTTTGCTGAGCAGCATGCAAGACTAAAACTACTAAACCAAGCCAAGGACAGGGATATTAGCAGGATGA TTGGAGAACTATGGAACAAGTTAAAAGAGCCTGAAAGATCAGTTTATCAAGAGAAGGCTATTAAGGATAAAGAGAGGTAC CAAGCAGAAATGGAGGGTTACCGTGAGAGACTGAAGATGGGCAATGTCATCAGTGATGCTGTGCCACTGCAACAAAGGCT CCCTGAATCAGATGCATCTTTGGTGGATGTGGACATAAAATTGATTGGTTCTCCTCAAACTCCTGTGGAAAGCACTTCTA GTGGAAGTGACTATGAAGATGATGATATCAATATGGGTGCCACCTCTCCTGAAGTAGAAGTGGGTGTTGAAGCTACCTAT GTGGGTTCAGACAAGCCATCACAGGATTATGAGCTTCTTCCCCAATGCCAGAGAGAAGGGGATGCTGGAGTTCAGGATGT GCAAACGATGAATGAGAGCAAGACTATGCTAGCATTAATTTAG
Protein sequence (LotjaGi1g1v0553900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSTSCVSNSPFPMKEAAPISHSYPVPLAKYEEVVANPKLFIFTLEKLHASMGTKFMIPIIGGKELDLCRLFIEVTSRGG FEKLIKERRWKEVTSVFNFPSTATNASFVLRKYYASLLYHYEQIYFFKANRWIPPTSGALQSHAAPPVPARTTQFLQPSP AIQPVVFHQSSANAAEFSKGSSVVGVIDGKFESGYLVSVSLGSDMVKGVLYESPQTPMLPASASHHQSIIAKNNNTPAVL GVQRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLNQAKDRDISRMIGELWNKLKEPERSVYQEKAIKDKERY QAEMEGYRERLKMGNVISDAVPLQQRLPESDASLVDVDIKLIGSPQTPVESTSSGSDYEDDDINMGATSPEVEVGVEATY VGSDKPSQDYELLPQCQREGDAGVQDVQTMNESKTMLALI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 378 | 378 | 3.0E-155 | – | |
| PANTHER | 1 | 378 | 378 | 3.0E-155 | – | |
| Gene3D | 26 | 131 | 106 | 4.4E-25 | ||
| SMART | 32 | 122 | 91 | 1.3E-27 | – | |
| SUPERFAMILY | 32 | 134 | 103 | 2.09E-29 | ||
| ProSiteProfiles | 35 | 126 | 92 | 25.57 | ||
| SMART | 36 | 127 | 92 | 1.0E-29 | ||
| CDD | 37 | 122 | 86 | 2.28138E-48 | – | |
| Pfam | 39 | 122 | 84 | 1.0E-17 | ||
| MobiDBLite | 242 | 267 | 26 | - | – | |
| Gene3D | 245 | 338 | 94 | 1.2E-19 | ||
| SUPERFAMILY | 249 | 332 | 84 | 3.93E-20 | ||
| SMART | 260 | 329 | 70 | 1.6E-18 | ||
| ProSiteProfiles | 261 | 328 | 68 | 14.587 | ||
| Pfam | 261 | 328 | 68 | 3.4E-13 | ||
| CDD | 261 | 325 | 65 | 2.20643E-19 | – | |
| Coils | 310 | 330 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0553900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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