Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi1g1v0558900 |
Transcript ID | LotjaGi1g1v0558900.1 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Rac-like GTP-binding protein; TAIR: AT4G35020.1 RAC-like 3; Swiss-Prot: sp|O04369|RAC1_LOTJA Rac-like GTP-binding protein RAC1; TrEMBL-Plants: tr|I3SZA6|I3SZA6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0558900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:109105959..109109890) extracted from Lotus japonicus Gifu genome v1.2.
GCCCTGCCCAAAATTGAATTCGGTTTGGTCTCTTTGTTCCCCTAAAAAAAGGTTTAAATTTTTTTTTTTTTTTCAAGTGT CAAGTCAAGTTGTCTTCTTTTCTTTCTTGACCTGATTTCTTGTTGAAGGAAAGAAAGAAAAAGAGAGATTGAGAGTGAGG TAAATGATTTGATTAGGGTTTCTGATTAGAACAAGAACCAATGAGTGCTTCAAGGTTCATCAAGTGCGTCACTGTTGGCG ACGGCGCCGTCGGCAAAACTTGCTTGCTCATCTCCTACACCAGCAACACCTTCCCTACGGTCACTCACTCACTCTCTTCT CCTCTTTCTTCTTCCAATCTTTCTTCAATTCCAGAGTTAGGGTTTTGAAATTTGGGAATTGGGATGTAGCAATTTTGATA GCTTGTGCTGTTTTTGTGATTACAGGACTATGTGCCTACTGTGTTTGACAATTTCAGTGCAAATGTGGTTGTGGATGGCA GCACTGTCAACCTGGGTTTGTGGGACACTGCTGGTAACTTTAGATTCTCACTTGTGTTTTAGCTGTATCTCTGTCTGTGT TTCTGGTTATTGGTTTGATGTTTTCATGTTATGGAACAGGCCAAGAAGATTACAATAGGTTAAGGCCTTTAAGCTATCGT GGGGCTGATGTTTTTCTGCTTGCATTTTCTCTCATAAGCAAGGCCAGTTATGAAAATGTTGCCAAGAAAGTAAGCTTTCT TTGCTTGGTGGTTAATTTAATTCTTCTTTCTTCATTTTTATTTGTCCCTTTTACTGAATGTGTGTACATATTTTCTTTTT TCTAGTGGATTCCTGAGTTGAGGCATTATGCTCCTGGTGTTCCAATTATTCTTGTTGGGACAAAACTTGGTTAGATTCTT ATTCCTTAGTTACTTTTGATTCCATGAAACCTCACTGACACTACCTTGATTCACCTGCATAATGTTGTAGTCTTCATTTC TAGTATAAGATTGGTTCCCACATGCTGGATTGTTCTCTATCAAAAGGAATCGATTATTAATTTGATTTTAGGCATTCACT AGACATTATGTAAATCATAGTCCATCCAACTCTATTCATCATTGTTTTCTTGGTAAGAGGTAGAACATAATAGTAGTTTC ATTGTACAATGCTGATACCAATTGCTATGTTTTTGCTTGTGTAATGTGACATATCTTTCAATGTTTTTAAATGTGAAGAA TTACATTTTTATTGAATCTACTAATTAAATCCCTACCTAAATTCTAAAATCTGAAGCCGCTGCGACAACATCTTCTCCCT TTATGACTTGTCATTGGATAGAAATTGAATTTGGTCAATATTTGGTAAAGATATAAGAAAATATTTCTGTTAATTGCTTT CACATGTGGTTGTTTTGAAATGTGTTTCCTCTGTGACATGCAGAATTAATTGAATGCAGTTGATTTTCTATTACAAAGCT GTCATGATTAGTTTGTCTGGTCATTTAATTTTGGGAACTAAATGTTTGTCTTGTAGATCTTCGGGATGACAAGCAGTTCT TTCAAGACCACCCTGGTGCAGTGCCCATCACCACAGCACAGGTATTTGCGAGTTGTTACTGATTCCATTATTTACTTATG ATCATAGCTGATTGCACTTCTTTTAGCCTTTATTTATTGTTCATAACTAGGGCATCAACATGCTTGATAGGTTTGTGATC TGTTTTTCTATCTTTTTTGAAGGGAGAGGAACTGAGAAAACTTATTGGTGCTCCAATGTACATTGAATGTAGTTCAAAAA CACAACAGGTACGCATTCTTTGCAATTTCAGATCTTTGAAAGTTTGGAAAATGTAAAATATGGTGACCTTAAAAGTGTAC CTTTACCGTTGAATGCAGAATATAAAAGCTGTTTTTGATGCGGCCATCAAAGTAGTTCTTCAGCCCCCGAAGAAGAAGAG AAAGAAGAGAAAGGGGCAAAAAGCCTGTTCTATTTTGTGATTTCCAATTCATAATATTCTAGTTCTTGGAGGATGACATG ACTGTAGCCTTTTCCGGGTAATCTTCACCATACCATATATCATACTGTTTCCAACCTAGACTATAAATTAAGGTTTGTGA GCTAATTGTCTAGCTGTAATGCTTTGCAATTTCAATATGGTTGGCGTGTGCACCTCGTGTGTTTATGTAGACTTGTATTA ATTACCATTTCTTGCTCTAGGCACAATTTGTATTCCTGTTGTACTATTATTAGCGGCCCTGCATTGTGGCCTTGTATGTG AACCAAGTAAAATGTAATTATGTTAGCTATATCTGTATGGCTTACTGAATGTAGTTGTTTGGATCAATGTTTCATTCACT CATTTTCTGTTTTATTTGCTCTCAAGTGCGTGGAAAATGTGATCTGAAGTGTTTTTCCCAACACTTCGTGGGTGTTTGAT TTCACTACTAGAATTCACATCTAGACAGAAAATCACGTGAAATCACACACAAACTACAATAAGAAAAAAGTGTGCTTTGT GTGTATCAGATGATATACATCAAAACACACCGGTACTAGTTATTTACACTTAAAATGTAATGGAATTTGTGTCCAAATCA TTTCCAAAAACACAGGATTATAATCACTTGTTTTTTGAATTCATGGGCTGATCCAAATCTTTGATCCACATTAATTCACT TTTCTTTTTCCAGAATTATTGGTTTGTTCAAGCACCTACCCGGTGGGTAGATTTCTTCATTATATGCTTCTTAATAGTTA CTCCCTCCGTTCCAAAACTATTGTAGTTTTAGTTTTTTCACAAAGTTTAAGAGTTCATTAATTGGTGTTATAATTTGACT GAAACACCCTTATTTAATGAGTTATAAGAAAGAGAGAGAATAAAAATCATTGATCAACTAATTGGTGAGAATTGTGATTG ATCAAAATAAGAGGTGGTGCTTGGGAGATACACTATTAAATGAGGGCATGAATGGAAGAGAAAGAGATAAAGTGCTTTGG ATATGTAAAACAACAATGGTTTTGGAACAGAACAAAAAAGCTAAAACTACAATAGTTTTGGAACGGAGGGAGTAATACTT ATTAGTTAAGGAAATAAAGGGAGCAATTATTGAGTATACAATTGATATTCAAATAAATATACTACTATGCTTTCAATTCC CACTTCTATAATTGCAAAATGCATTGTATTTATGCAACTTTACGAGCATCCATTACCACAATCAAAATCAGCTATGCCAT TTAAAATCAAGTCCAGCCACAGGTACAGTTTCTTAATGACAGCAACGAGCAGTGTTTGTGGTTGGCGTTATTGCAGAAGG AATAGTGCGAAACCATTAATATTCTTTAAGCGAAATAGTTCTTTTACTTAATTCCAAAGATGCAGTTGAGTAGGCCATAG TACCTATCTAATCTAATTTGTGGTCGCAAAATTCACACTTTTATTTTATATACATGAAGGATCTTTGGGGGATAACATGA CCAGTCAAGATCGTGAGGCTTGAACCACTTTATTTATCTGTTAAATGATAAAAAAAAGTGAACATAACTCTTTGGATAGA TTATGATTAAACTTCATTTACATTGCACTTAATTGGTGTCTAAACACAGTCTTGGTTGGTAATGCTGATGCATTTTTTCA AGTTTAGAATCTTTTCCTTGCTTTGACCAAAAGAAATTTCCTTCATACATCATAGATGGTTATGTGACGGGTCTTATTAG ACCTCGATATGTTTTAAAACTAAAATCCCTCCCTGACTTTATAAATAATAATTTATTGTTTTTGAAGCTCCATTATCATG GTTGTTGATTCGGATGCAGCCATCCCAGCTAACATGGTTGTAAAACTTTTCGCATATATGCAATAATATAATTCCTCCGG TTCTAAATGATTTTAAAACGTTGAAATAATCGTTTATCTTATGTTTGTTCCTATATGCTTTATCTACAATGCATAAAATA TGAAGATCTAGG
CDS sequence (LotjaGi1g1v0558900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGCTTCAAGGTTCATCAAGTGCGTCACTGTTGGCGACGGCGCCGTCGGCAAAACTTGCTTGCTCATCTCCTACAC CAGCAACACCTTCCCTACGGACTATGTGCCTACTGTGTTTGACAATTTCAGTGCAAATGTGGTTGTGGATGGCAGCACTG TCAACCTGGGTTTGTGGGACACTGCTGGCCAAGAAGATTACAATAGGTTAAGGCCTTTAAGCTATCGTGGGGCTGATGTT TTTCTGCTTGCATTTTCTCTCATAAGCAAGGCCAGTTATGAAAATGTTGCCAAGAAATGGATTCCTGAGTTGAGGCATTA TGCTCCTGGTGTTCCAATTATTCTTGTTGGGACAAAACTTGATCTTCGGGATGACAAGCAGTTCTTTCAAGACCACCCTG GTGCAGTGCCCATCACCACAGCACAGGGAGAGGAACTGAGAAAACTTATTGGTGCTCCAATGTACATTGAATGTAGTTCA AAAACACAACAGAATATAAAAGCTGTTTTTGATGCGGCCATCAAAGTAGTTCTTCAGCCCCCGAAGAAGAAGAGAAAGAA GAGAAAGGGGCAAAAAGCCTGTTCTATTTTGTGA
Protein sequence (LotjaGi1g1v0558900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV FLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFQDHPGAVPITTAQGEELRKLIGAPMYIECSS KTQQNIKAVFDAAIKVVLQPPKKKRKKRKGQKACSIL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
ProSiteProfiles | 1 | 177 | 177 | 25.103 | ||
PANTHER | 1 | 197 | 197 | 2.7E-132 | – | |
PANTHER | 1 | 197 | 197 | 2.7E-132 | – | |
Gene3D | 3 | 183 | 181 | 3.5E-66 | – | |
SMART | 4 | 180 | 177 | 6.8E-21 | – | |
CDD | 6 | 178 | 173 | 7.75446E-138 | – | |
SUPERFAMILY | 6 | 178 | 173 | 6.29E-54 | ||
PRINTS | 7 | 28 | 22 | 7.8E-38 | – | |
SMART | 7 | 180 | 174 | 2.5E-28 | – | |
TIGRFAM | 7 | 171 | 165 | 2.8E-36 | ||
Pfam | 8 | 178 | 171 | 2.5E-51 | ||
SMART | 9 | 180 | 172 | 1.5E-114 | – | |
PRINTS | 30 | 46 | 17 | 7.8E-38 | – | |
PRINTS | 47 | 69 | 23 | 7.8E-38 | – | |
PRINTS | 109 | 122 | 14 | 7.8E-38 | – | |
PRINTS | 155 | 177 | 23 | 7.8E-38 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
Biological process | Small GTPase mediated signal transduction | Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals. |
Expression pattern of LotjaGi1g1v0558900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…