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LotjaGi1g1v0558900.2

Overview

Field Value
Gene ID LotjaGi1g1v0558900
Transcript ID LotjaGi1g1v0558900.2
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Rac-like GTP-binding protein; TAIR: AT4G35020.1 RAC-like 3; Swiss-Prot: sp|O04369|RAC1_LOTJA Rac-like GTP-binding protein RAC1; TrEMBL-Plants: tr|I3SZA6|I3SZA6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0558900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:109107931..109109690) extracted from Lotus japonicus Gifu genome v1.2.

ATGAGTGCTTCAAGGTTCATCAAGTGCGTCACTGTTGGCGACGGCGCCGTCGGCAAAACTTGCTTGCTCATCTCCTACAC CAGCAACACCTTCCCTACGGTCACTCACTCACTCTCTTCTCCTCTTTCTTCTTCCAATCTTTCTTCAATTCCAGAGTTAG GGTTTTGAAATTTGGGAATTGGGATGTAGCAATTTTGATAGCTTGTGCTGTTTTTGTGATTACAGGACTATGTGCCTACT GTGTTTGACAATTTCAGTGCAAATGTGGTTGTGGATGGCAGCACTGTCAACCTGGGTTTGTGGGACACTGCTGGTAACTT TAGATTCTCACTTGTGTTTTAGCTGTATCTCTGTCTGTGTTTCTGGTTATTGGTTTGATGTTTTCATGTTATGGAACAGG CCAAGAAGATTACAATAGGTTAAGGCCTTTAAGCTATCGTGGGGCTGATGTTTTTCTGCTTGCATTTTCTCTCATAAGCA AGGCCAGTTATGAAAATGTTGCCAAGAAAGTAAGCTTTCTTTGCTTGGTGGTTAATTTAATTCTTCTTTCTTCATTTTTA TTTGTCCCTTTTACTGAATGTGTGTACATATTTTCTTTTTTCTAGTGGATTCCTGAGTTGAGGCATTATGCTCCTGGTGT TCCAATTATTCTTGTTGGGACAAAACTTGGTTAGATTCTTATTCCTTAGTTACTTTTGATTCCATGAAACCTCACTGACA CTACCTTGATTCACCTGCATAATGTTGTAGTCTTCATTTCTAGTATAAGATTGGTTCCCACATGCTGGATTGTTCTCTAT CAAAAGGAATCGATTATTAATTTGATTTTAGGCATTCACTAGACATTATGTAAATCATAGTCCATCCAACTCTATTCATC ATTGTTTTCTTGGTAAGAGGTAGAACATAATAGTAGTTTCATTGTACAATGCTGATACCAATTGCTATGTTTTTGCTTGT GTAATGTGACATATCTTTCAATGTTTTTAAATGTGAAGAATTACATTTTTATTGAATCTACTAATTAAATCCCTACCTAA ATTCTAAAATCTGAAGCCGCTGCGACAACATCTTCTCCCTTTATGACTTGTCATTGGATAGAAATTGAATTTGGTCAATA TTTGGTAAAGATATAAGAAAATATTTCTGTTAATTGCTTTCACATGTGGTTGTTTTGAAATGTGTTTCCTCTGTGACATG CAGAATTAATTGAATGCAGTTGATTTTCTATTACAAAGCTGTCATGATTAGTTTGTCTGGTCATTTAATTTTGGGAACTA AATGTTTGTCTTGTAGATCTTCGGGATGACAAGCAGTTCTTTCAAGACCACCCTGGTGCAGTGCCCATCACCACAGCACA GGTATTTGCGAGTTGTTACTGATTCCATTATTTACTTATGATCATAGCTGATTGCACTTCTTTTAGCCTTTATTTATTGT TCATAACTAGGGCATCAACATGCTTGATAGGTTTGTGATCTGTTTTTCTATCTTTTTTGAAGGGAGAGGAACTGAGAAAA CTTATTGGTGCTCCAATGTACATTGAATGTAGTTCAAAAACACAACAGGTACGCATTCTTTGCAATTTCAGATCTTTGAA AGTTTGGAAAATGTAAAATATGGTGACCTTAAAAGTGTACCTTTACCGTTGAATGCAGAATATAAAAGCTGTTTTTGATG CGGCCATCAAAGTAGTTCTTCAGCCCCCGAAGAAGAAGAGAAAGAAGAGAAAGGGGCAAAAAGCCTGTTCTATTTTGTGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0558900.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGTGCTTCAAGGTTCATCAAGTGCGTCACTGTTGGCGACGGCGCCGTCGGCAAAACTTGCTTGCTCATCTCCTACAC CAGCAACACCTTCCCTACGGACTATGTGCCTACTGTGTTTGACAATTTCAGTGCAAATGTGGTTGTGGATGGCAGCACTG TCAACCTGGGTTTGTGGGACACTGCTGGCCAAGAAGATTACAATAGGTTAAGGCCTTTAAGCTATCGTGGGGCTGATGTT TTTCTGCTTGCATTTTCTCTCATAAGCAAGGCCAGTTATGAAAATGTTGCCAAGAAATGGATTCCTGAGTTGAGGCATTA TGCTCCTGGTGTTCCAATTATTCTTGTTGGGACAAAACTTGTCTTCATTTCTAGTATAAGATTGGTTCCCACATATCTTC GGGATGACAAGCAGTTCTTTCAAGACCACCCTGGTGCAGTGCCCATCACCACAGCACAGGGAGAGGAACTGAGAAAACTT ATTGGTGCTCCAATGTACATTGAATGTAGTTCAAAAACACAACAGAATATAAAAGCTGTTTTTGATGCGGCCATCAAAGT AGTTCTTCAGCCCCCGAAGAAGAAGAGAAAGAAGAGAAAGGGGCAAAAAGCCTGTTCTATTTTGTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0558900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV FLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLVFISSIRLVPTYLRDDKQFFQDHPGAVPITTAQGEELRKL IGAPMYIECSSKTQQNIKAVFDAAIKVVLQPPKKKRKKRKGQKACSIL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51420
1 188 188 24.892
IPR003578
PANTHER
PTHR24072:SF299
1 208 208 2.5E-126 –
PANTHER
PTHR24072
1 208 208 2.5E-126 –
Gene3D
G3DSA:3.40.50.300
3 194 192 3.8E-60 –
SMART
SM00173
4 191 188 2.0E-12 –
SUPERFAMILY
SSF52540
6 189 184 7.84E-49
IPR027417
CDD
cd04133
6 189 184 2.4644E-132 –
SMART
SM00175
7 191 185 9.8E-19 –
PRINTS
PR00449
7 28 22 5.7E-35 –
TIGRFAM
TIGR00231
7 124 118 3.3E-31
IPR005225
Pfam
PF00071
8 189 182 1.6E-47
IPR001806
SMART
SM00174
9 191 183 1.4E-104 –
PRINTS
PR00449
30 46 17 5.7E-35 –
PRINTS
PR00449
47 69 23 5.7E-35 –
PRINTS
PR00449
109 122 14 5.7E-35 –
PRINTS
PR00449
166 188 23 5.7E-35 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of
GO:0007264
Biological process Small GTPase mediated signal transduction Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0558900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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