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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0559000 |
| Transcript ID | LotjaGi1g1v0559000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein MCM10 like; TAIR: AT2G20980.1 minichromosome maintenance 10; Swiss-Prot: sp|Q0VBD2|MCM10_MOUSE Protein MCM10 homolog; TrEMBL-Plants: tr|A0A151RNG8|A0A151RNG8_CAJCA Protein MCM10 isogeny; Found in the gene: LotjaGi1g1v0559000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:109111885..109115140) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGGACCAGAAGTGTAATTAAAAAAGTGACAATCCGACCAAAAAATTTGGAAAGAGAGGGAACAATATTAGTTCCCTC CAAAACATTTGATGTTGTGTTCTCTTCTCTTCTCCCTCGAAAATCAAAAGCTAAAACCCTAACCAGTGCAGTGCAGAAGC GATACGAATTACGATGTCAAACCACGAAGACGACTTGGATCTCCTCCTTTCTCTTGATGATCAGGATCAGGAGAGGGTTC TCGAAACCCCTCCTGGTTCTCCCTCCCCAGGTTACTTGACCGATTCCGATTCCGATGGCGCCCCCAACCAAAGGGACAAG AACCCCGACATGTCCGTTTTCAGAAATGCTGTTCAGGATTGCCTTCTCTCTCATTCCCCTGAGCCAAAACCTAAACCTAA ATCCAAACTTCCTGCTACTCATGCTAAAGATTCCGATGTCGAGAAATTTTCAGGTCTTCGAATAAGGGACCAATTGTTAA CCCCTGCTGAGCTCAGGGACTCCTTTTCAGACATTCGTTTCGTTCGGTTACCAGTTATCAAGTAATCCTCTTCAATTCCT ATTCTACTAATTAATTGAAATTCATATAGTCTGTGGATCCTGTTTACTGATTGTGTGAGTGAATGTGCATTTAGGAATTT GTTTATTGGGGATTCTTTTTCTGGAAGTTGGGCGACGGTTGGAGTGTTAACCGAGAAGGGGATTCAGAGGACAAGTTCCT CAGGGAAGGGCTATTGTATATGGAAAATTGGCTGTTTGGATGAGAATACTGTTTCTCTTTTCTTGTTTGGTGATGCTTAT CTGAGGAACAAGAACGAGCAGGCAGGAGCGGTTTTCGCGCTGTTTGATTGTTCCGTCCGCAAGGATGCCAAGGTATTGAA CTGTTATGCGCTGGTTATTTTTGTTTTCAATCAAGGTTTGCCATGATTTGCAATTTGTTTTATATGTGTTTGCAGGGTAA TGGTTTTTCATTGAGTATATACTCCCCTAGTCAAATTAAGAAGATGGGAACCTCTGTTGATTATGGAGTTTGCAAAGGAG GAAGAGCAGATGGGATGGCTTGTACAATGGTCATAAATAAGTATGAAAGCATATGACTATCTTGTTATTTCGATATGATG GCTTTTGAAATCACAATAGGCTTCCTTTTCAATTGTCTGAAGTCTGAACCTTCTCCTTCTGTTGGAATTCACAAAAAGAG TGATGATCGAAGTTTTTCCTTTATTGAATATTCCTGATCTAAGTTTGTAGTTTGGCTCTGCTTGGGGTTAGGGGTCGTGA GTGCTTTTTACATTTGCTTTGGCGTTGCAAGTTTTGCAAGATACTTTTGAAGGAAAAGATTATCTGAGGTTCTCTATAGA AAATGAAGCCTGAAGTGGGTGAATCAATATTTTAGGTTTTTATTAAGTACTCTGACTTAGATAATGGATTTTGTAAGACA ATGAGCATCGTTAGTCGTAACATTGATCCATGTGCTTGTCATGCTTGAGTGATTGTAAGTTGTTTTTCTTGAGCACACCA GATATAATAATAGATAATTTGGCCCTAAAACGGTCCGATAAACTATACTCATGTTGATGAAGGATAAATGTTTTATTCTT CTTTTTATATAGAATCCATAAGTAGACATTGAAATGGAATGATCTGTCTTGCTTTTAGGTGTCAGTTATTCAAGAGAGTA CAATATAGCATTATAAACATATTAATATTGTACTTTATATAAATTCTTAAAAAGTTTATTTGCTGTGAAGCTATTATCAT TTTTTTTTTTGATGAAAGCTTTTCCATGTAAACCATGTTCTTATCCTTCTATTTTGCTTTCCTTCTCAGAGTGTCATAGT TTATTTGGTACTCTGATTGATTGACTTCATTACTGCTGATCTTTGTTATTTCAGGCGTCATGGGGCATATTGTAAATTTC ATAAATCAGTAAGCAGCATTTTATTCTTTCATGTTTTATGTGTGGTAACAAGGATATCAATTTGTTAACTATGCATAATT TCCTGCAGAAAACATCAGAGAAATATTCTACAACGAGAACTGAACTTAAGGGAGGGTGAGTGTTCAGCTCTTAAAAGTTT CTACTATCTTATACTTTGCGCTCAACTGGTTTGATTTCATATCACATATGATACACACATGGAGTTTTTATTGGCAGAAA CTTAAGGACAGCATTTAGGCCTAGGGATCAGTATCTCAGGTCAGAAGGAATTTTCGTAGTTGACCCGCTTGCTGACAAAA CAAACTTGAAAAAGTCTCAGCCTGTGAAATTGATGTCTGTGGATGGTCTCAGAAAGGCATTGAGGTATGTAACTATTAGC AAGGGAATTTGAGTTTATCTTTCACTCCATTGAAATACGGAGTATTCATATTTTAATTTCTAAACCAGTAATGCAGGAAA AGTAACAACAACTATACGCTCGCAAGGGATCAGATTTCTTTCTGAGGTTGCAGGTGACTAGATAATCTTGTAACTAGTTG CCAGAATTTATGTATTCATACTGTCGTATTCTTACATGGATTTTATTACTATTTGCAGGTAACTCTGATCCAAAAATTAC AAACAAAGGACCAAAGACTCCAAAAGAACGAAGAACTTCCGCTGAGAAGAGGTTAGTTGCAAAAAAGATTCTAGGTTAAT GTTACTTGCATTTTGTGCATATTAGCGATAGAGCATACTAGATGACTTAACATGTTATTGTCTTCAGGAAATCATCTTTT ATGAATGTGGGATCCTCTGTCATAAGAAACCAACAGTTTGATGTAAAAAGGAAAAAAACAGATGGGCAAGATTTGGTCGA TAAAACCACAAAGAGTTCGGGAAAGATGATTGAATTAGATTTTGTTAGTTCAGATGAGGACTTCTGAAATATCTGCATCG TTCTGCCTGGTTCGTTGGTGTGTACTAATTTTGGTAAAAAATGTGTTGTGAGAGCATAGAGTGAAGGCTTCTGCAAGGTG GTTGTAAAATGGTGTGCGCCGTAGTCGTTAGAATCACAGGATTCACAATCTGAATTGCAAGGTTCAGCATGATTTAGCAA GCCAGTGATTCATATTTATATGATGAATCACAAATCATTTTGTATTGTGCAATATGTGCTTAAATTATTGCTATTCGTGT ACTAATATGAAAAACCGCACCCTTCAACAATTTGTAACATTTTCCTTTTCTTTCACTAATTCTCATAAAAGAAATTGAAA ATTCTGATACTCATTGTTCAATAGAAAACTAAAGGAGGGCACTTTGTTTAATTGCG
CDS sequence (LotjaGi1g1v0559000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAAACCACGAAGACGACTTGGATCTCCTCCTTTCTCTTGATGATCAGGATCAGGAGAGGGTTCTCGAAACCCCTCC TGGTTCTCCCTCCCCAGGTTACTTGACCGATTCCGATTCCGATGGCGCCCCCAACCAAAGGGACAAGAACCCCGACATGT CCGTTTTCAGAAATGCTGTTCAGGATTGCCTTCTCTCTCATTCCCCTGAGCCAAAACCTAAACCTAAATCCAAACTTCCT GCTACTCATGCTAAAGATTCCGATGTCGAGAAATTTTCAGGTCTTCGAATAAGGGACCAATTGTTAACCCCTGCTGAGCT CAGGGACTCCTTTTCAGACATTCGTTTCGTTCGGTTACCAGTTATCAAGAATTTGTTTATTGGGGATTCTTTTTCTGGAA GTTGGGCGACGGTTGGAGTGTTAACCGAGAAGGGGATTCAGAGGACAAGTTCCTCAGGGAAGGGCTATTGTATATGGAAA ATTGGCTGTTTGGATGAGAATACTGTTTCTCTTTTCTTGTTTGGTGATGCTTATCTGAGGAACAAGAACGAGCAGGCAGG AGCGGTTTTCGCGCTGTTTGATTGTTCCGTCCGCAAGGATGCCAAGGGTAATGGTTTTTCATTGAGTATATACTCCCCTA GTCAAATTAAGAAGATGGGAACCTCTGTTGATTATGGAGTTTGCAAAGGAGGAAGAGCAGATGGGATGGCTTGTACAATG GTCATAAATAAGCGTCATGGGGCATATTGTAAATTTCATAAATCAAAAACATCAGAGAAATATTCTACAACGAGAACTGA ACTTAAGGGAGGAAACTTAAGGACAGCATTTAGGCCTAGGGATCAGTATCTCAGGTCAGAAGGAATTTTCGTAGTTGACC CGCTTGCTGACAAAACAAACTTGAAAAAGTCTCAGCCTGTGAAATTGATGTCTGTGGATGGTCTCAGAAAGGCATTGAGT AATGCAGGAAAAGTAACAACAACTATACGCTCGCAAGGGATCAGATTTCTTTCTGAGGTTGCAGGTAACTCTGATCCAAA AATTACAAACAAAGGACCAAAGACTCCAAAAGAACGAAGAACTTCCGCTGAGAAGAGGAAATCATCTTTTATGAATGTGG GATCCTCTGTCATAAGAAACCAACAGTTTGATGTAAAAAGGAAAAAAACAGATGGGCAAGATTTGGTCGATAAAACCACA AAGAGTTCGGGAAAGATGATTGAATTAGATTTTGTTAGTTCAGATGAGGACTTCTGA
Protein sequence (LotjaGi1g1v0559000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNHEDDLDLLLSLDDQDQERVLETPPGSPSPGYLTDSDSDGAPNQRDKNPDMSVFRNAVQDCLLSHSPEPKPKPKSKLP ATHAKDSDVEKFSGLRIRDQLLTPAELRDSFSDIRFVRLPVIKNLFIGDSFSGSWATVGVLTEKGIQRTSSSGKGYCIWK IGCLDENTVSLFLFGDAYLRNKNEQAGAVFALFDCSVRKDAKGNGFSLSIYSPSQIKKMGTSVDYGVCKGGRADGMACTM VINKRHGAYCKFHKSKTSEKYSTTRTELKGGNLRTAFRPRDQYLRSEGIFVVDPLADKTNLKKSQPVKLMSVDGLRKALS NAGKVTTTIRSQGIRFLSEVAGNSDPKITNKGPKTPKERRTSAEKRKSSFMNVGSSVIRNQQFDVKRKKTDGQDLVDKTT KSSGKMIELDFVSSDEDF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| MobiDBLite | 1 | 87 | 87 | - | – | |
| PANTHER | 1 | 281 | 281 | 5.0E-82 | ||
| MobiDBLite | 69 | 87 | 19 | - | – | |
| Gene3D | 80 | 254 | 175 | 6.8E-41 | – | |
| Pfam | 220 | 265 | 46 | 3.9E-13 | ||
| MobiDBLite | 341 | 369 | 29 | - | – | |
| MobiDBLite | 351 | 366 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Double-stranded DNA binding | Interacting selectively and non-covalently with double-stranded DNA. | ||
| Molecular function | Single-stranded DNA binding | Interacting selectively and non-covalently with single-stranded DNA. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. | ||
| Biological process | DNA replication initiation | The process in which DNA-dependent DNA replication is started; this begins with the ATP dependent loading of an initiator complex onto the DNA, this is followed by DNA melting and helicase activity. In bacteria, the gene products that enable the helicase activity are loaded after the initial melting and in archaea and eukaryotes, the gene products that enable the helicase activity are inactive when they are loaded and subsequently activate. |
Expression pattern of LotjaGi1g1v0559000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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