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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0562500 |
| Transcript ID | LotjaGi1g1v0562500.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | V-type proton ATPase proteolipid subunit; TAIR: AT1G75630.2 vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4; Swiss-Prot: sp|P0DH92|VATL1_ARATH V-type proton ATPase subunit c1; TrEMBL-Plants: tr|F4HZ57|F4HZ57_ARATH V-type proton ATPase proteolipid subunit; Found in the gene: LotjaGi1g1v0562500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:109457194..109458516) extracted from Lotus japonicus Gifu genome v1.2.
ACCGTGATGGCTGGCTTCAGCGGTGATGAAACTGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTTGTCTTCTC CTGTAATCTCTTCCTCCTATCTCATCTCAATTAGATCTTTATTTTTCATCCCATAATATCTTGTCAATTTCAATTTTAAT GAAATTTCTTGTTCGAAATCGTATATGTCGTTTTAGTTTTAAGCTTCTAGGTCTTATTGGTTGTTGATTTAGTTATGCTT TGATCGGATCGGATTTTGAACTTTTTATGTAGGATTCAATTAGTTAGGCGCAGATCGTTAACTTTAACATGTGTAATTTG TTAGTTAATTTGATGTGTGATGTGAGTAAATCAGAATGATTTCATGAACAAAGAGTCATTGCACTTTATTGAATTCCGAA GCTTCGCCATTATTATTCTGTTATCAATAATTAATCACCGAGAATTTCATATAATTTGAATTCTCTTGCGTGTTAACTAT CGAATTTGTAAGCATCTCCATTATTATTAGTTATTGTGCTATTATTGAGAATTTCATATAATTTGAATTGTTGTTGGCAC TGGAAGGTATGGGAGCTGCGTATGGCACAGCAAAGAGTGGTGTGGGAGTGGCTTCCATGGGTGTGATGAGACCGGAGTTG GTGATGAAGTCTATTGTTCCTGTTGTCATGGCTGGAGTTTTGGGTATTTATGGCCTTATTATTGCGGTCATCATTAGTAC CGGTATTAACCCAAAGGCCAAATCTTATTATCTCTTTGATGGCTATGCACATCTCTCCTCTGGTCTTGCCTGTGGCTTGG CTGGACTCTCCGCTGGCATGGCTATTGGTATAGTTGGCGATGCTGGTGTTAGGTATCTATACTATAACCCTTCCTCTTGT TTCTCATATATGATTCATTGGTTGATTGATTATTTCTCATATGATTATTTTAATTTGTTCTTAATTGCTTCTATTCTATT GCCTTATTGAATTGTAAATCAATAAGCGATTCAATATTTAGGTCCTTGAATATATCATTACATTGCAAAACGTTCTCTAG CTATCTAGCATTTTCAACCCTTAAATAACCTTCATGGAACATATATGCATAATCTCATATCTGCCTTTACTAGTTTTCAT CTAGTGTGAATTTGATATGTGGACTTACCTCTTACACTAATACCTATTGAATCATTCCCTCCTTGTGCAGAGCCAATGCA CAACAGCCAAAACTTTTTGTTGGAATGATCCTCATTCTCATCTTTGCTGAAGCTCTTGCCCTTTATGGTCTCATTGTTGG TATTATATTGTCTTCTCGTGCTGGCCAGTCTAGAGCTGAGTAA
CDS sequence (LotjaGi1g1v0562500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGCTTCAGCGGTGATGAAACTGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTTGTCTTCTCCTGTAT GGGAGCTGCGTATGGCACAGCAAAGAGTGGTGTGGGAGTGGCTTCCATGGGTGTGATGAGACCGGAGTTGGTGATGAAGT CTATTGTTCCTGTTGTCATGGCTGGAGTTTTGGGTATTTATGGCCTTATTATTGCGGTCATCATTAGTACCGGTATTAAC CCAAAGGCCAAATCTTATTATCTCTTTGATGGCTATGCACATCTCTCCTCTGGTCTTGCCTGTGGCTTGGCTGGACTCTC CGCTGGCATGGCTATTGGTATAGTTGGCGATGCTGGTGTTAGGTATCTATACTATAACCCTTCCTCTTGTTTCTCATATA TGATTCATTGGTTGATTGATTATTTCTCATATGATTATTTTAATTTGTTCTTAATTGCTTCTATTCTATTAGCCAATGCA CAACAGCCAAAACTTTTTGTTGGAATGATCCTCATTCTCATCTTTGCTGAAGCTCTTGCCCTTTATGGTCTCATTGTTGG TATTATATTGTCTTCTCGTGCTGGCCAGTCTAGAGCTGAGTAA
Protein sequence (LotjaGi1g1v0562500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGIN PKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYLYYNPSSCFSYMIHWLIDYFSYDYFNLFLIASILLANA QQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 2 | 140 | 139 | 3.9E-99 | – | |
| PANTHER | 2 | 140 | 139 | 3.9E-99 | – | |
| Gene3D | 10 | 141 | 132 | 3.5E-42 | – | |
| TIGRFAM | 12 | 120 | 109 | 1.3E-51 | ||
| Phobius | 12 | 34 | 23 | - | – | |
| CDD | 12 | 79 | 68 | 9.64724E-33 | – | |
| SUPERFAMILY | 13 | 76 | 64 | 3.66E-6 | ||
| TMHMM | 15 | 34 | 20 | - | – | |
| Pfam | 16 | 75 | 60 | 9.0E-14 | ||
| PRINTS | 29 | 53 | 25 | 2.3E-37 | ||
| Phobius | 35 | 54 | 20 | - | – | |
| TMHMM | 55 | 77 | 23 | - | – | |
| Phobius | 55 | 75 | 21 | - | – | |
| PRINTS | 55 | 79 | 25 | 2.3E-37 | ||
| Phobius | 76 | 94 | 19 | - | – | |
| SUPERFAMILY | 86 | 137 | 52 | 5.23E-8 | ||
| CDD | 88 | 191 | 104 | 8.15918E-25 | – | |
| TMHMM | 92 | 114 | 23 | - | – | |
| Phobius | 95 | 120 | 26 | - | – | |
| Pfam | 96 | 190 | 95 | 1.7E-15 | ||
| PRINTS | 106 | 132 | 27 | 2.3E-37 | ||
| Phobius | 121 | 140 | 20 | - | – | |
| TMHMM | 135 | 157 | 23 | - | – | |
| Phobius | 141 | 160 | 20 | - | – | |
| Gene3D | 149 | 197 | 49 | 5.5E-13 | – | |
| SUPERFAMILY | 151 | 191 | 41 | 3.01E-9 | ||
| PANTHER | 157 | 200 | 44 | 3.9E-99 | – | |
| PANTHER | 157 | 200 | 44 | 3.9E-99 | – | |
| Phobius | 161 | 165 | 5 | - | – | |
| Phobius | 166 | 190 | 25 | - | – | |
| TMHMM | 167 | 189 | 23 | - | – | |
| Phobius | 191 | 200 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Proton transmembrane transporter activity | Enables the transfer of a proton from one side of a membrane to the other. | ||
| Cellular component | Proton-transporting two-sector ATPase complex, proton-transporting domain | A protein complex that forms part of a proton-transporting two-sector ATPase complex and carries out proton transport across a membrane. The proton-transporting domain (F0, V0, or A0) includes integral and peripheral membrane proteins. | ||
| Cellular component | Proton-transporting V-type ATPase, V0 domain | A protein complex that forms part of a proton-transporting V-type ATPase and mediates proton transport across a membrane. The V0 complex consists of at least four different subunits (a,c,d and e); six or more c subunits form a proton-binding rotor ring. | ||
| Biological process | Proton transmembrane transport | The directed movement of a proton across a membrane. |
Expression pattern of LotjaGi1g1v0562500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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