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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0568700 |
| Transcript ID | LotjaGi1g1v0568700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ring finger protein; TAIR: AT1G20823.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9LM69|ATL80_ARATH RING-H2 finger protein ATL80; TrEMBL-Plants: tr|V7AQN7|V7AQN7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0568700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:110172374..110173981) extracted from Lotus japonicus Gifu genome v1.2.
AACTAGTATGTGTTTGATTTATGCTATTAATATGAGGATTATGTCGGCAGATAATCTGTAAATATTTATGTAAGCGATTA AAGATCCCGAAGACATGTCATAATTTGTGATGGTGACCGTAGCCGACACACCCCGAATTGTTTCCTCATTGAAAAAAAAG TGATTTAAAGAGGGCAATAAGTGCAGTGGTGTAGTAGTTGCATATAGTGCTAGTCCAAAGCTAAACTCACACACACTCTT TTCATTCTTCCCAAAACAGAAAGAAAGAAAGAAAGAAACAAAGCCTATCACATGACTCGTCCCTTCAGGTACTTAGGTGA GCACACCTCGTCCTCCACCTCACCTGATTCCGCCGCCACCGTCGACTCCGACTTCGTCGTCATCCTCGCCGCTCTCCTCT GCGCTCTCATCTGCGTCCTCGGCCTGGTCGCCGTCGCCCGCTGCGCCTGTCTCCGGCGCCTACGCCTCTCCTCCACCACC GCTCCGCCTCTTCCACCTCCTCTTCCCGCCGCTGCCAACAAAGGCGTCAAGAAGAAGGTCCTCCGCTCCATCCCGAAGCT CACCGCGACCGCCGAATCCGCGGTGAAATTCTCCGATTGCGCGATCTGTCTGACGGAGTTCGCCGCCGGAGACGAAATCA GAGTGCTGCCTCAGTGCGGCCATGGCTTCCACGTGTCCTGCATCGACGCGTGGCTCAAATCGCATTCTTCGTGCCCTTCC TGCCGACAGATTCTGGTAGCGGCTTCCAGATGCGACAAGTGCGGCGGGATTCCTGCCCCTGCCGCCAGCACCAGCTCCAC CACCGCGCCTCCGCCACCGGAATCCGAAGCCAGATTAAAAGTAAGAGAAGACGATGCCAACAGGTTCTTGCCCTAGCTTC AGCTTCTGGAATTCAGTTCATATTAACTCAAAATTAGTGAATCATTTTCCTTGTGTAATCATGTTTATATAATGAAGATT ATCAGATTATGTCTGCATGATATAATTAATATCAGTTTCTATTTTGTATAAATTGAAATTCAATGAAATAGTAGTTGATT AATGTTAGCAGCATATAGCTAGAATCGTAATTAGCAACTGTATTATTGCTTAATCGCACTCTCGAATCGATTAATTAAGC TGAAGCGGCTTGAATTTGGTTGTTAATACGTATGATTAAGCTCTGTTTTTATGAATTGATTTTGCTCTGGCTAGATCGGA GTTCGTTTGATTGCCGATGACATGACCTAGTTGTTATGTGGTTACTGGTTATGGCACCATCATCATCACCATCAGATTCT GTAAGGTTGAAGATGGAGGAGCAATGAGACACAGTGATGCAGTTTTTCTTTTGTACATGGACTTCAGGGTGTGTGCTCAA CTTTTAGGGATAAAGCTTTATGTTGTGACTGTGAGAAAAGGGAAAATCATATTGCTTGTTAGTTGTTCATAATTAGTTTG CAATTTAGTAGCAGTTATTTTTCTGCACTTTGAATGTTTTTGCATCTCAATCTTTCTTTCACATTGTTGCAAGTTTTGTG AAAGTAATGTTAGAGAAATAACATCTAGTCTAAATTCGACTCGACCACCATTGGGCGGTGCTTATGGGGAAGCAGTTGTT GGGAAATC
CDS sequence (LotjaGi1g1v0568700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTCGTCCCTTCAGGTACTTAGGTGAGCACACCTCGTCCTCCACCTCACCTGATTCCGCCGCCACCGTCGACTCCGA CTTCGTCGTCATCCTCGCCGCTCTCCTCTGCGCTCTCATCTGCGTCCTCGGCCTGGTCGCCGTCGCCCGCTGCGCCTGTC TCCGGCGCCTACGCCTCTCCTCCACCACCGCTCCGCCTCTTCCACCTCCTCTTCCCGCCGCTGCCAACAAAGGCGTCAAG AAGAAGGTCCTCCGCTCCATCCCGAAGCTCACCGCGACCGCCGAATCCGCGGTGAAATTCTCCGATTGCGCGATCTGTCT GACGGAGTTCGCCGCCGGAGACGAAATCAGAGTGCTGCCTCAGTGCGGCCATGGCTTCCACGTGTCCTGCATCGACGCGT GGCTCAAATCGCATTCTTCGTGCCCTTCCTGCCGACAGATTCTGGTAGCGGCTTCCAGATGCGACAAGTGCGGCGGGATT CCTGCCCCTGCCGCCAGCACCAGCTCCACCACCGCGCCTCCGCCACCGGAATCCGAAGCCAGATTAAAAGTAAGAGAAGA CGATGCCAACAGATCGGAGTTCGTTTGA
Protein sequence (LotjaGi1g1v0568700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTRPFRYLGEHTSSSTSPDSAATVDSDFVVILAALLCALICVLGLVAVARCACLRRLRLSSTTAPPLPPPLPAAANKGVK KKVLRSIPKLTATAESAVKFSDCAICLTEFAAGDEIRVLPQCGHGFHVSCIDAWLKSHSSCPSCRQILVAASRCDKCGGI PAPAASTSSTTAPPPPESEARLKVREDDANRSEFV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 27 | 27 | - | – | |
| MobiDBLite | 1 | 21 | 21 | - | – | |
| PANTHER | 5 | 170 | 166 | 1.4E-68 | – | |
| PANTHER | 5 | 170 | 166 | 1.4E-68 | – | |
| MobiDBLite | 7 | 21 | 15 | - | – | |
| TMHMM | 27 | 49 | 23 | - | – | |
| Phobius | 28 | 49 | 22 | - | – | |
| Phobius | 50 | 195 | 146 | - | – | |
| Gene3D | 72 | 150 | 79 | 2.3E-21 | ||
| SUPERFAMILY | 88 | 150 | 63 | 2.36E-20 | – | |
| Pfam | 102 | 145 | 44 | 7.9E-15 | ||
| CDD | 102 | 145 | 44 | 7.93152E-18 | – | |
| SMART | 103 | 144 | 42 | 2.5E-8 | ||
| ProSiteProfiles | 103 | 145 | 43 | 12.681 | ||
| MobiDBLite | 161 | 195 | 35 | - | – | |
| MobiDBLite | 179 | 195 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0568700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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